RNA id: XM_026932915.2


Basic Information

Item Value
RNA id XM_026932915.2
length 4174
RNA type mRNA
GC content 0.47
exon number 16
gene id kif17
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18654169 ~ 18670459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attcaacatttatgggaagactctccagtgtcagttctttGTAGAAAGTCTATAGGACAGATGACTTTGGTgaagaaacaactgtttatagctgctgtaacttAAGTGATGGTCATTCTACAGCATTATATCTCCTCCAACATGGCGGCGCAGCTGATGACGTCATTACGCGGAGATACAGTGAAAAAACTGGAAAACCTGCGCGAGCTGAGTTTCAGGTTGCTAGGCAACGGAGCACGCCATGgcaggacacacacagctctgataATAACAGTGTTTGTTTAACCTCGATTTTAACACCGGAATACTTTTATGGATCTGGGAATGGTGACGACTAGTaaaaaaactaGGTAGAGTTAGCAGATAGCTCGAGCTGATCTCTCCTGCGCTCCAGGATGGCCTCCGAGTCGGTGAAGGTGGTGGTCCGATGCCGGCCTCTGAACAACCGAGAGAAGACGCTCAACTGTAAGATGGTGGTGTCTGTCGATTGCAGCCGATGTCAATGTTTCATTGAGAAGCCAGGAGCCGCCGAGGAGCCGCCCAAACAGTTTACATTCGACGGGATGTACTTCATCGATCAGACCACTGAGCAGATGTACAACGAGATTGCATATCCTCTGGTGGAGGGTGTCACTGAAGGATACAACGGCACAATTTTCGCTTACggacaaacaggaagtgggaaATCCTTCACCATGCAGGGGGTGTCAGACCCCCCAGCTCAGAGAGGGGTCATACCAAGAGCTTTCGAGCACATCTTTGAGACCATCCAGTGTGCAGAAAACACAAAGTTCCTTGTGCGAGCCTCCTACCTTGAGATCTACAAAGAGGAAATCAGGGACCTTCTTGGGAAAGACACCAAACAGAAGCTGGAGCTGAAGGAGCATCCAGAGCAAGGAGTGTACGTGCGAGACCTCTCCATGCACACGGTGCACAGTGTAGGAGAGTGTGAGCGGATCATGGAGCTGGGCTGGAAAAATCGCTCAGTGGGATACACACTCATGAACAAAGACTCTTCCCGCTCGCATTCCATATTCACCATCCACCTGGAGATCTGCAACATAGATGCTGCTGGTGAAGACCACTTACGTGCCGGGAAGCTTAACTTGGTGGACCTGGCCGGCAGCGAGCGCCAGTCCAAGACCGGTGCCACAGGAGACCGTCTTCAGGAAGCCACCAAAATCAACCTATCCCTGTCAGCACTGGGCAACGTCATCTCGGCGCTGGTCGATGGACGCTCCAAGCACATCCCTTACCGCGACTCCAAGCTCACTCGCCTCCTTCAGGACTCCTTAGGTGGCAACACACGCACCCTCATGGTGGCCTGCCTCTCCCCGGCTGACAACAACTACGAGGAGAGCCTGAGCACGCTGCGCTACGCCAACCGCGCCAAGAGCATCCAGAACCGTCCACGCGTCAACGAGGACCCCAAGGATGCACTCCTGCGCCAATACCAGGAGGAGATCAAACAGCTGAAGGCGCTCATCTCCGGTCAGCTCGGGACTGTAAGCCTCATCTCTTTGCTagcaggtcagaggtcacagggGAGCACAGGCATCCAGTCCAGGCCACAGAGCAGCGAGAAGGAGAAGATTAAACAGGATTATGAGGAGAAGCTTGCCAGACTGCAGGCGGACTACAACGCAGAGCAGGAATCCAAAGCTAAGCTCCAGGAGGACATTGCAGCCTTGAGAATGTCTTATGAGACCAAGCTGTCCAGCCTGGAGAGAGCAAAAGCATATGACTCCAGCAAAGAGGTCAGTCCTGTCAACGGAGCCACCCCAGAGCCCTCAGAGGCTTCCCAAGACATGTTACAGGAGAGTGAACAAACCAAGGGAGTTATTACAGCAGGTCCAGGGGGAGAGCCCGGGGTTCCAGAGTCAGCGGTTGTTGCTACGCCAGGCCCACTGGATCGGAAACATGTTTTGGAAAGGCTTCATCAGCTAGAGCAGGAGTTTGTCGGGGGCGAGCAGGTGAGAAACGAGGAGCTGAGGCAGCGGCGGAGGCAGAGGAAGACTCTGGCTAACCAAAGGAAGAAGCAGCTGATCGAGGCTCTGAGTCAGTGCAACGAAGACAGCGACGCCGTGCTGCTAAATGTTTACGACTCCATCCAGGAGGAGGTACACGCCAAGAGCAGGCTGCTGGAGAACACACAGAGCAAGCTAAAAGCTGCCAAGTTAGAGATCCGAGATCTGCAGGTGGAGTTTGCGGCTGAGCGTGATGACTACCTGGCCTCCATCAGACGTCTGGAACGTGAAACGCAGCTACTGCAGGGCCTCCTGGAGCGCATGGTGACGCTGGTGCGCAGGGACTGCAACTACAGCAACCTGGAGCGCCTGAGGAAGGAGGCAGTGTGGGACGAGGAGAGCGGCGTGTGGAGGCTCCCTGAGGTGCTGGTGCAGAAAACAGCGCTACCTGCAGCAGTGCCTTCATCGGCAGCCAGCAGCTCCTCCAGACTCCCAGGACGCAGGAACTCAGCCACAGACCCAGCAGAGCCTTTCCTGgaggaggaggaccgTTATAAGGAGATGCTGAACCGCAGCGACAGTGAAAACATCGCCAGTAACTACTTCAAGATGAAGAGAGCCAATCAGCTTTTATCAGGAGAGTCCATGAAGAACCTCGCCAGTCACTCTGCGGTTCCAGGAAACGGTCCGTCGCATCAAAACTCCTGTGGCTCAAACCCCGCTGCAGAGGCCCTCCTCCCTCGCCCGTTTCGCCTGGAGTCTCTGGGCATCATGCCTGCCAACACCAAAGCCAAGAGGAAGAAGAGCAAGATGTACGTCTCCTGTGATGGTATCTGATCCTCCATTTTACTGTCTTCAGGAGAGAACAATATGGCTTACTCGTGCACCTTGCTGCTTTTGTGTAATACGTTCAGCGTGAACGAGTAAATCTTTACATCAGGGCTCTCTTGATTAAccttaacattatttactgcatatGCATATTAAtggatatttaaaatatacctTCACTAATTAATGGTTATTCCATCCCTGACTATAAACAAGTCTGTTTAATGCaaaaagtaatttattataGCATGTTATTAAATGTTGTTAAATAACTGAACTCAGGTCAGTGGGTGTGAATGTTGGAAGTCTGCCTTATCAATTTTGCCAATTAATCATCACATGTATTAATTAAGACATCAGGTCCTATTGGTCATTGTGGGTTTATTTGTACTCATGCCTGGAGTAAATTCATTGTTTGTCTAATTTAATTTTCAAGTATCAATCATTTTGTTAATAATACTAATGATGGATGAAGGCCAGTTCATGGtttattaagtaaggaataaaactgagTGGtaagaagttgattattttccaataacagcatgtccaaaagtgttttattcctcttatcgcATAGCAATTTGCAATTTCTACATTTACAgtgcaatacatttttaattctcTACAttaaatgtccacaaaacaagttagttcctgttatcacttacattattgcAGTAGTTCCCTCGCCcggctctgtttttttctctcgatcgtaaagctaataaaacaaaaatacgcagcttgtcattttacctaaaaaccataaaatgtaaaactcttctgtcctgaagactttctcatggtgAAAgactttaatgttaaataaacagctccttacagaagaactttttttttttttaaataatttttaatgataACATTTATTGCTAGACTTAAATTATGTGAgcgtacaaatccctgtgtcAGCAGTTTCTATAGAAGCAAAAAGAATATTAGAATGagatcattaatataaacctgtgattcagCCAGCAGTAATTCATAGctgtgtgtttatagaaaatgaatcaccttctgacaaatcagatttgagaatttatcAGCGCTAATGCTGTAAACGTTTGATAAAGGAGCCTTTATATAAAGTGAAAGTCATTGCCtgtgacatttatttttgtaggctGTTATTGTAGACTGTGATCTCAGTCCTCTTGTCTTCTTACATGACTTTGACTGATGAAAATGTCAGTTTTGTACAATCTATTAGTTTCTAATACAAGCTACCCATTTTCATGGACTTGCACTAGTATTTTGCTATCCATAAACGAGTGATTATACTATTTATCATTGCACTGAAATTTGTATCACTGTCCAAATCAGATGTATTATTAAAGTACAACTTGGTGAAA

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0007018 microtubule-based movement biological_process
GO:0030030 cell projection organization biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005930 axoneme cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367666 lncRNA upstream 22225 18631715 ~ 18631944 (+) True G310425
TU367662 lncRNA upstream 37168 18616690 ~ 18617001 (+) True G310421
TU367661 lncRNA upstream 38515 18613515 ~ 18615654 (+) True G310420
TU367657 lncRNA upstream 51589 18602378 ~ 18602580 (+) True G310416
XR_003403812.2 lncRNA upstream 52445 18596516 ~ 18601724 (+) True LOC113538055
TU367692 lncRNA downstream 68507 18738966 ~ 18809037 (+) True G310446
TU367817 lncRNA downstream 229801 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA downstream 234370 18904829 ~ 18906623 (+) False G310547
XR_004580273.1 lncRNA downstream 243835 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA downstream 243835 18914294 ~ 18959567 (+) False LOC117599928
XM_026932543.2 mRNA upstream 130 18646711 ~ 18654039 (+) False sh2d5
XM_026932794.2 mRNA downstream 16983 18687442 ~ 18692013 (+) False snrpe
XM_034314325.1 mRNA downstream 38283 18708742 ~ 18741557 (+) True LOC113537968
XM_026932735.2 mRNA downstream 38283 18708742 ~ 18741557 (+) False LOC113537968
XM_034314326.1 mRNA downstream 44762 18715221 ~ 18741557 (+) False LOC113537968
XM_026932736.2 mRNA downstream 44762 18715221 ~ 18741557 (+) False LOC113537968
TU366607 other upstream 1390506 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2152485 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 2160030 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 4133022 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 4177784 14370788 ~ 14476385 (+) False asic1b
TU367680 other downstream 16938 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 16994 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 416566 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 837796 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 1098531 19768990 ~ 19783913 (+) False vamp3

Expression Profile