RNA id: XM_034314131.1


Basic Information

Item Value
RNA id XM_034314131.1
length 7342
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC113538092
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19535411 ~ 19762252 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGGACGGGAAATGGCTGCCGAAAACAAGccggaagGACTGAAGAGAATTCGTAATGCAGATCGAATGTACAGAACTTCCGTCAGCTACGCCAGCCACACTGCTACTAAGGGTGTCCGAGATGACACCGACACCAACAATGAACATGGACATTTGAAAATCTACCTGCCTAAGAAGCTGCTCGAATGTCTGCCCAAATGCTCCTCCCTGCCCAAGGAGAGACATCGGTGGAACACCAATGAGGAAATCGCTGCTTACTTGATATCATTTGAAAAGCATGAAGAGTGGCTAACGACATCCCCTAAAAccaggcCACAGAATGGGTCTATGATCCTATACAACAGGAAGAAAGTGAAGTACAGGAAAGACGGCTACTGCTGGAAGAAGAGGAAAGATGGCAAAACCACGCGGGAGGATCACATGAAGCTGAAAGTGCAGGGAGTCGAGTGTCTGTACGGGTGTTACGTCCACTCCTCCATAATCCCCACCTTCCACCGCAGGTGTTACTGGCTGCTCCAGAACCCAGACATCGTTCTGGTCCACTACCTTAACGTTCCGGCCATAGAGGATTGTGGGAAGCCATGCGGTCCAATCCTGTGCTCCATCAACACAGACAAGAAGGAGTGGGCCAAATGGACCAAGGAGGAGCTCATCAGCCAGCTCAAGCCCATGTTTCATGGCATCAAGTGGACTTGCAGCAACGGGAACAGCAGCACCGGCTTCTCGGCTGAGCAGCTGGTGCAGCAGATCCTGGACAGCCACCAGACCAAGCCACCTCCCCGGACTCACAACTGCCTCTGCACGGGGACGCTGGGTGCTGGTAGTAGTCTGCATCATAAGTGTAACAGTGCCAAACACCGCATCATCTCCCCGAAGGTCGACCCACGCTCTGGAGGTGCATACAGCAGCACTCACTCTGAAGTCCAGAACAGTGATGTGTCTGAGGGCAAGACCGAGCACACCCATGGAGCAGGCAAAAACGGCAGGGCAACGGGCGATGGACCGGGTGGATCAACTGCACGAGAAAAGAGGAACAGCAAAGGACCGAAACCGGCTCTACTTCATCAGAACAGTATGGAGGTGTCCTCCACCAACCAGGTTGAGGTGCCAGACACTACCCAGAGCTCTCCTGTCTCCATTAGCAGCGGGCTAAACTCTGATCCAGACATGGCCGATAGCCCAGTGGTGACAGGTATGAGTCATGTGGCCTCCGTCATGAGCAGCCTCTCCCAGTCCGCCACTGTCTTCATGTCAGAGGTCACCGGTGATCCCGTCTACAGCATGTCTCCCACTGGAGATCCCAGTGCTCATCTCCTAGGCCCTGACACAGCCTCAAGCAGCTTGGTGCTGGCAGTTGCTGCTGACAGTCACAAATTTGCTTTTCCTGGGGCTGTGGGTGTGGGTTTAGGAGATGTAGGGTCTACAGAGAGGTTGGCTATGCTTTCTGCAGCTAGTATGTCAGAAGAGCTTGTCCTTTCTAGCAGCCTGGAGTCTGGGAGCATCAAGCTGCCTGAAACCACCATGAACTTTGACCCAGACTGCTTCCTCAACAACCCCAAGCAGGGCCAGACATATGGAGGAAATGGGCTAAAGACAGAGGTCAGCAATGCAAGCAGTTGTAGCAACGGAGGAGTCCGCTGTTCACCTCCTCTCGCCGACAATGGTTATGGCTTCAACGCTTCACTGGTCAAGAATATAAAGACGGAGGACACGTCATTTGAGCAGCAGCTGGCCAAAGAAGGTGGTTACCAGGTCGGAGAGGTGGTCAGTGGTGCAGGTAGCCTGTCCAACTCCTCCGGGAGTGGCTCTACCCAGAGTTCCCTAGCTCTGACACCAACTAGCTCATTGCTCCCGTCTGGGGGTGGCCTAAGCCCTAGCACCACACTGGAGCAGATGGATTTCAGTGCCATTGATGCCAAGCAGGACTACTCTTCTACCATGATGTCTGCTACAAACTATGGTCAAGCTATACCCAGCCCTCAGCTGGCCCACCAGAGCCACTCTCCCAGCTTCTTCCTGCAGGGCTCACCCCAGTCCACTCAGACACAAACCCACCAGAACACTAGCACTTCTGCTCAGACCTCACACGACTCCACTGCTTTCATGGGTATGTCCGTAGTCAAGACTGATTCAACAGGCACCAATGggcatcaccaccaccaccaccatgctcaTCAAGGCCAGCACACTGCGTCCAACTGCAACGGCAGCTCTCCAGCTGAGAGTAATGGTCAAGGTGGCACTCTGCACCTTCTGCAGTACCAAAACCGCTTTGCAGGTGCCAGCAAAGAACACGAGGAGGTTGGAAGTCTGGAACAACCAACCAACTCAGAAGGACGGGACACAGGTGGGCAAGAAAAGGAGACAGAAGACTTGCTGAAGGCAGGAGATCACCTGCAACACTGTGTGGGAAATGGGGCAGACGGCAATGGAGCTACAGAGCACTACCTCCAACAACCAGAGAGCACCACCTTGggagcaggaggagctggaggaacAGGAACAGGTACTAATAGTGGAACCCTGTGTAACGGCACCGATGGCAGTAGGGCAACTGGCAGTCCACATCAGCAGCTCCAGCCTCTCCTACAGGGAGCAGGGCTTGTCCAGGGGCTTTTTAACAACATGGCAGCCCACCAGGCTCTGGCCACAAATGGAGCCAATGGAGGAGGATCCATGGAGATCAGCCTAGATCACTTTGACGTCTCCTTTGGGAATCAGTTTTCAGACCTCATCAACGATTTCATTTCAGTAGAAGGAGGAAACAGCGCAGCAATCGGGGGACAAACGGGCAACACACTCTACAGCCATCAGATAATTGCCCACTCAGGCACAGAAGGGCAAGTGTCATCTGGAGCAACCACCCAACAGGTTGCTGAAGAAGGACCCACCCATGGAGCTGCAGGGTACAACTCTGCAGAACTCTGCCTTCAGCCGTGTTGCAGCCCCCAGTCGGCCCAGCCCGGGGCATTAGGAACAGACACTGGGCAGTTGGCATACATGCAAGTAGAGGAGGTAGTGTCTGCAGCTGTGGCTCATGGGACCATGGGGATGCTTCAGAACACTGGGGGACTGTTTGTGGTGACAGACTATTCACCAGAGTGGTCTTACCCAGAGGGTGGAGTGAAGGTTTTAATCACAGGACCATGGCAGGAGGCCAGCAGTGACTACACTTGCCTGTTTGATCAGATCACGGTTCCTGCCTCGCTCATTCAGCCTGGAGTGCTGAGATGTTACTGCCCAGCTCACGACACAGGCCTGGTGACCCTTCAGGTGGCAGCCAGCAGTCAGATCATCTCCAACTCGGTGGTGTTTGAATATAAAGCTCGTGCTCTCCCTGCCCTGCCCACCTCTCAGCACGACTGGCTCTCCCTGGACGACAACCAATTCAGAATGTCGATCCTGGAGCGCCTGGAGCAGATGGAGCGCAGAATGGCCGAGATGTCcggccagcagcagcagcaaggCAGTGGTGGAACATCTGAAAGTGGAGTAACAgggggaggaggtggaggaggtggaggaggaggaggaggaggagaaggaagagGCAATGCCGACCAGACACAGCAATCCCCGGGTCAGAGTCAGAGCCAGGGACAAGCTGGAAGCTCCTTTGAGAGtcgtgtggtggtggtgtgtgagaAGATGATGAACCGCGCCTGCTGGGCAAAATCCAAGCACTTAATCCACTCCAAAACTTTCCGGGGTATGACCCTGCTCCACCTGGCAGCTGCCCAGGGTTACGCCAACCTGATCCAGACCCTCATCAAGTGGCGCACTAAGCATGCAGACAGCATTGACCTGGAGTTAGAGGTGGATCCTTTGAATGTCGACCACTTCTCCTGCACCCCATTGatGTGGGCTTGTGCTTTGGGTCACACGGAGGCAGCAGTGGTTTTGTATAAGTGGGATCGGCGTGCCCTGGCTATCCCCGATTCTCTCGGACGCTTGCCATTGGCCACAGCCCGATCCCGGGGCCACACCAAGCTGGCGGAGTTTCTGGAAAATCTTCAGAGGgaagaacagcagcagcagacgTCCGCTGCCAGCATGTCTTTCTCCTCATCTGCGGAAAGCTCCACCACAGAGGGCTGGATGAATGTTTGGGGAAGTGAGGCTGCTTCTGGAATAAGAGGGAGCAACATCGCTAGCTCTGTGCCAAGCTCAAACCAAGATTTGAGGAGACCCAGGTCTGAATCTTCCAGTTTCTACAACAGTGAAAGCCAAGGTGATGCCCCATTAACCAAGAAACACAAACCCAATCCTGAGATCCACCAAGCAAGGCCAAGCAAGCCTGGTTCTACCCCTCTCGGTTTAGGAGAGCAAGTCCACAAGGCTAAAACATGCCCTGCTAAAGCAGCCAGAGCAGGTACGGTGGACAAAGAGTCAGGAAAAGGAGACAAGGCTCAGACAAAGCTGGGCTCAGCTTGCGGAGGTGGGCGATGGAGTGGCAGACAGACCGCAGGTCGCAGAGGGCCAATTGGAGGACTTGCTAAAGAAAGGTTGGCAAACAGGCTGAGGTTACGAGAAGCATCCGGTACAGGATCAGTCTCTGAGCTTCTGGTGGGCCAAGAGGATCTGGAGAACACAGGAGACCTACAGTTGAATATGATGACTTTGGCCGAGCATATCATTGAAGCAACGCCTGATCGCATCAAGAGTGAAAACTTCGTTGCCACAGAGTCAGCACCCCTGGATAGTGTTGAGGTCAACAGCACTATGAGTTGGTTAGCTACTTACCTTGGAGATGCAGAAAGGTTCTTATACAGCAAACCGCTGGTGTGCGCCACAGGATTGGGCGGTGGCCACGCTGGCAGCCACCTGGAATCTGAAGGCCCTTTCGGAAAACTTGGACTTCCATCTCCAGCAGACTGGAGTGCATTTCTTAACATCTCTCACAGCAAAAAGGAGCGGGATCTAACCCAGCTGGCCCTGTCCGACCACGAGCAGAGAGAGCTGTACGAGGCAGCGCGCCAAGTCCAGAGCACCTTCCGCAAGTATAAGGGGCGTCCACTAAGAGAACAGCAGGAACTGGCAGCTGCTGTTATTCAGCGCTGttataaaaagtacaaacaGCTGACATGGATAGCCTTGAAGTATGCACTTTATAAGAAGATGACGCTGGCCGCCATCCTAATACAGAGTAAATTCCGCAGCTACTATGAGCAGAAGAAGTTCCAGCAAAGTCGTCGGGCAGCCATGCTAATCCAGCAATACTATCGCAGCTACAAGGAGCTGGGCCGACCCAACTCGCACTCTCACGCCGCTGCAGCTGCAGCCCTAGTGCAGCACAAACTCAGAAGTGGTCTGCTCACCAAGAGGCAGGACCAGGCCGCCAGGAAAATCATGCGATTTCTACTCCGATGTCGCCATAGGGCGAGAGAACTGAAAAAGGCCAAGGAACATGAGAGCTCGCCAAAGAGCCCCGTCACAATGTAACGTCCACCTCCAGTCCAGACTGTTtcccttttcctctttctgtttttacacGAAACGAACAATTTACCAAAAGGCGAAAactattcaagaaaaaaaaaaaaaaaaaaaaaaacagaagcgaGAAGATATTAAGAACATGTGAACATGTGAACATGTGACGGTTACATCATTACTGATTCTGTCGACCCTGGTACTGCCACAGCATTGTGTATTTTTCCTCTCCATTGGGGAATGTGGGGAGTTCTGCGTAAAACAAAGACTATATCTGGGAAATAATGACATCCTCATGCCATTTTTTGCActcttcatatttttttttaaattgaggaACGTTTACGGTGGAGCTGAacgcttttttttcctgacagcaCTTGTAAGATAAGAAAGATGACGAGATTAAGAAACACATTGCATTAATGTAATCATGCTGGATTCTGCTTATGATTATTacgtttttatattttgaacgaaagggggaaaaacaacagatttgaacaacaaaaaaagaacaaaaatgacaaaagcaaACCAAAAAAATGGTCTCATCTCATTGATCATGTGCATGCAGAGTTTTCCGTCAGCTCAATGTATATCAACTCTTTGTTTCTTACTAGTCCGTCCTTTCATCCGGTGAAAAGGGGATGGGCTGCACATGAATGTAGACCGGGGTtaggttttaaaagaaaaaaaattctgggtTTGAAATATCAGTGTCTTACTTTTTGTGGTTTTGGAGTAAGTCACCATTTGGGACAGAGCCGAATCTCTGTTGGGTAACTGTTTGTGTGCACTGTTTTTTGACTTTCTAAACGAGTCCTTTTCTTAACGTCACCTTTCGCTGGCCTGACTTTGTGAGTCCCGTGTTTGCTGAATTTTAAACCGGAAATAGTGCATGTATTTGAGCCGAGTGCTCCTGCATGCTGACAGAActgttttgtgggtttttttgtgtttaattaacctCAGCATCGTTTCTCTGTCCTGTCATACAAAATATAcaccttttaaatttttttttttttttgccttaccTCATTTACCTCTTCTTTTACGTGCATTCTGCTTcctatatttttaaactgaatttattatttttgttgtatattTGTCTCATTGTGCCACAGAAACACtatttttgctgtatgtttgtgtgtgcgtgtgtgtttgctgacAAGGTTTCAGCACTTTACTTTGTTGCCGTTTTTTCCAGAAAGTTGTTAAAAGATTTTCGTTTGGAGATTCCCGTAACACTGACGTCTTAAAGACTTTTTAAAGGGTCCCTATAAACAACCTCCATATTTTTGACTAAAGCGTGGTCCCTGTACATAACAAAGACAAGAGGGAAGGTACACGGAGAGCCAGAACCCTTACCACAAGAGGattgtatttaataatatatattattttattcataaaaaacataataacatgataaagagatagcaaaaaaataacaaaaaaatatattgtatagtTTTGTTTGAACGCCCGACATGTACGGTTGTATTgtttgtaaatactgtaaatatctgGTGCAAAAGAAGGAGCCATGTGCATGAAACCTTACGATAATGACACAGAgcataatataaagaaaaaaatgtagtggTTATGATCTAAACAGATTCATTCAGTTTCAATATAAGAGccttttatttgaaatgttctTATAAAGAGCATTTAGTAAAGCATGACTTTTTTGCAAAATCATGATAAAACATAGAGTTAGTGGAGAccgaaaaaaaaatcttcagatACGACTTGTTTATAGAGTGACGAGAAGTTTGTATACCCTTATGAatcatctggatttctgtatcAGTGGCTCCAGAAATGTGACGTGATCATGTGATAATAAAGGGagtataaataaacacacgTGACATTACACATGTCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368130 lncRNA upstream 36747 19494850 ~ 19498671 (+) False svbp
TU368131 lncRNA upstream 36747 19494850 ~ 19498671 (+) True svbp
TU368000 lncRNA upstream 422391 19110129 ~ 19113027 (+) True G310703
TU368221 lncRNA downstream 49186 19811438 ~ 19811735 (+) True G310882
TU368219 lncRNA downstream 73427 19835679 ~ 19836564 (+) True G310880
XR_004580176.1 lncRNA downstream 77169 19839421 ~ 19848284 (+) True LOC117599874
XR_004580177.1 lncRNA downstream 77169 19839421 ~ 19845547 (+) False LOC117599874
TU368220 lncRNA downstream 86215 19848467 ~ 19855283 (+) False si:dkey-264d12.5
XM_026932701.2 mRNA upstream 18240 19508189 ~ 19517178 (+) True phf13
XM_026932870.2 mRNA upstream 37357 19494908 ~ 19498061 (+) False svbp
XM_026932940.2 mRNA downstream 6731 19768983 ~ 19783925 (+) True vamp3
XM_034314142.1 mRNA downstream 25569 19787821 ~ 19807212 (+) False per3
XM_034314141.1 mRNA downstream 25570 19787822 ~ 19809321 (+) True per3
XM_034314140.1 mRNA downstream 25570 19787822 ~ 19809321 (+) False per3
XM_026933004.2 mRNA downstream 53654 19815906 ~ 19834429 (+) True si:dkey-264d12.1
TU368136 other upstream 18259 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 447612 19087025 ~ 19087806 (+) True G310681
TU367680 other upstream 843404 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 843404 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 2271755 17260979 ~ 17263663 (+) True LOC113537865
TU368156 other downstream 6738 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 6738 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1108400 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile