RNA id: XM_026932943.2


Basic Information

Item Value
RNA id XM_026932943.2
length 4494
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC113538096
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12533236 ~ 12562741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTGATGAAggccaatctggcaacccggctGCTGATTAGCTTAGCTGAAGCGCTGCATCCTTTCAAACCCGAAGTGGAGACGCGAGTGGAAGTCTGTCAAACTTTTCCCACAGCAGACGTGGAGAAGAAATGAAAAGCCAACTATGTTGATTTTTAAACTAGTTCGGTGTCTCCTTGTGCTTTTGTAACAGTGTTTTCAGACTTTTAGCACTCCAGTTCGGGGTTAGAAGTAGCTTTTCGGCGTTTTCTTCCTCTGCTTTATCGATTACAGGAGCTCCACGTCGTCCCAATGACTTCAGGTCCATAAACGATCTCCTGCTTCGTTTTGGACACCCTTCTCCTGCGAAAATGGCCGACATGGCCGGGCTTGTCTCTGATGAGACAGTGAAGGGCCCAGGAGAGCTGGATCCGTGTCTGTCGGAAATCGACAGGAAGTATGAAATTGTCCCTGCTGTTATCTCCTCTACATGCTGCCTCTTTGGAATTATCTACTGTTTCTTTGGTTACCGCTGCTTCAAAGCCATCATGTTCCTGTCGGGTCTGTTGTTTGGCTCGGTGATTATCTTCCTGCTGTGCTATAAGGAGCGAGTGTTAGACACACAGTTGAGCATAGAGGCAAGTGCTGGCATTGGCCTGGGCATCGGACTTCTGTGTGGCCTCGTCACTATGCTAGTGCGCAGTGTCGGCCTCTTTATGACGGGCATCCTGCTCGGCCTGCTCCTCGCCATCGCTGGCCTTTTGCTCACACACCAGCTATTCACACCCAGCACCCCATGGgtgCCTGTAGGTGTCCTCCTCGGCACTGGCATGCTGTGTGCCGTTTTAACTCTTCAGTGGCAGAAGTTTTTCACCATCATCTCCACAGCTGTGTTTGGTGCTGCCATCATGACAGTGTGTGCTGATTACTTTGTGGAGTTGCTGATGCTggtcacacacatttatgattGTCTGCGCCTCGTCCCTGCTCCAGAGCCACTCTGCTGGTACAGCTGGGTCATCCTGGGCATCTGGCCTATGCTCAGCGTTATGGGAGCATTAGTGCAGTGGAAGCTCACAGCTGAAGGCTTTTCACACACTGAAGtgATCATCAGCAGGAGGCAGAAGCGATTGCAGCTGATGAGAATAAGACAGAAAGATGTGAAAAAGGTGCAGCTGTCTGCAGAGTTACCTGCAGAGTCTCCGGGAGCGTCAGATGGGCACAGGCACATCCCTGAGCAGCCTGAGTACCGCCAACCATACCATGGTGGATATGGATTATGATACTGGATCCACAgttccactcacacacaccacagcagcAGCACGCACCTGAATATGAGCTGCATTCACCAGTGGTTAAAGAACTAACTGTCCAGATAAGGAGAAAACAAGATGGTACTTCGTAGTAAAGTCAGACGGTATGACTGAGCTTTTGTTCAGGTCCAAACGTCCACTGCCACGAACTGTTATTTCATCACTTTTAAAATCTTAATACAGCTCTGTCTGATTCAAATTAAGACTCAGTCATTCACTAATATTAGACAGTTAAAGTCATATTAATTGAAACCCGTAGGAGTGGTGAGCATTGAAGGATAAATTATATATCAATAAAAAGTGTATGTGAACAGGACATTTATatgtagattttaattttacacaatGGATTTTTCAGACAGCTACACATCGGATCTGTCCCAGTTTTAAGGCTGCAATTTGAAGTTGTATACTTCAAATCTAGAAACCCTTAAAAATTTCCTAAAAACACTGTTATTTCCAATAGTTGCCATGCAGTGAAACTTAGTTTTAGGTGTGTATATGCGTCTTTCCATTTTGAAAATTGGCTCTGCCCACAGCCAAAGCAGAACTGCTCAGCTCTGCCCCTTTTCAGCAGGCATATGTTCCTGTGATTTCAATAGAGTGCGTGGAGTTACTTGTGGGAAAGGGTACAACTGCAATTCACCTTACAGACAACAGAGGGCTCTAAAACATCAAATGACTGAAATAAGTATCTGTTCTTGAACACGTAGGGCCCTCGGTATACAATTGTGTGACAGTTATTTATAGCCTATGGGGGAAAAAGCGGTTCTGGATGGACCTGAactccggacctgactgtatggaGATATAAATTGTCTAATTCCAATCATTAGGACTTCAGTAGATCACTGTATATGGGTGTAAATGGACTTGGTAGGCCTTTAACATTAGTTGGCTCTTCAGTTGCCAACTAATAACCAGCAAACTGATtaaacagtatttatttttataatggcCTGCCCTGTCTTGTCACTTGGCCTCAAAATCTTCACTTGTAACCTGCCACTACATGCTGTTGTCTTTTTAGGTTTACTAAAACTCTTCCTGTGTTTCCCAGACTACAAGATGCTTTTTTGATCCCTGTAGTAGATACTGTGATTTATACAGTGAAATGACATAGACTTCAAAGGTAGTTGGCCAAATTGTAGCCAAATGAGAAACCCCATTCTTTGCATGGATGAGAGAATGTTAGTGAAGTGCTGATTATTAGCGTGTTCATGTAATTTCAGcaaatactacaaaaaaaaaaaaaaaagtgtgacttAAAGATCACTGGCCTTACTCTTAAGTGTGAAagtcgtttttttttccctccattcctttttttttttttagtcatgttAGTTTACAAAGTGATGTCATACAGTCAAGTTTCCAGCTCATGATTTACAAAAAACATGATCAGCTTTTACAAGTAGGATACTTACATTTATGTTGACGTGCCTTGTGCGTGATTTACTTCAGCCACTGATATGGACATCCTATCAAAATCTAAGGTACATCATCGTGCTTTATACAACAAAACAACTTTGCAGTAGacaatacaatattttaaaaaatctttaatgtAGCATAAAATGATGTGAATGTGGGAAAAGACAAAGAGCATGGACATCcagtatttctcttttttttttttccctcctgccTGAAAGGCCCACCTTATTggtaatattttactattttgttGTCGAACAGCAAGTTTTTCTATAGAGGCGTCTGAGAGAATGTTTATGGCTCTGCTTCAAAATCAATCAGAGCATTGTGAAATGACTCAAAAAgcattttgtgtgtctgtattttaatttgtttttaaactatGGGGTTGTACAATAGTGTGTAATTGATTTACTCATGTCCATAGCGTTTATCAGATGCATGTGTATAGTTTTCCACAATAGTGGTTCTGTGAACACGCTGGCAGTTTGATCAGCAGTTTTATTCTTCCAGTGCATTTTTGTATTAAGGGGAATGTCTGGACATGAGTGCAAGAGAAATGTGGAATCTGCAGTACGATTACTGTTAATACTTGCTAGAACATTTGTCGTACTAATTtctcatatttcttttttaccATAAGATTTCTCCTAGGAGCTGCAGCTTGTCTCATTCATATCGCTGTTTATAATGTAATGAGCCTTTAGAGACTGTTAGTGGGATGGTGAGTTTCTGCACTTAAACCTGTGTTAATCAGTGCCTTTAGGTCAGATGAAGCTAAATGACCAGTCTATGCGctttctgtttactgtgttgTGTTCATCTTGTGTATAAGATGCTTCTGTGACCCATCTAGAAAGTGACAATTTGATGATTGTCACCCCACGTTTGTCTCTTGTAGGTGGGACCTGTCCAATATCCGTGaacatgtcattttaaaccattaaaaataatctgtaCAGAATAATCGATTGTTTGCTATACTAGACAAAACAACTAAATATACTACAGACATCTTTAACACATTTCTCTTGGGTTAGTTACAGGTACACACTAATGTAAATTCAGTATCTGAGTCTTGATTTGTACTGTGatttgtatctgtattatttaatttttaacaagCTGTATTTGTTCATCACAAACATCATCTAAGTTAGTTAGGTTAGCATGTATATTCTTCATGTAAATCAGTCATTCAAGAGAAGATAACCTTTAAAACATTACATGTTTTGAATgcagaaaatattttctgattattctgaaaatcttatttcttattcttaAATCTTTCTCTGATAACAAAATGGTAGAAATTGAGACTAGAAACCTACTAAAACTGAGAGAGTACAATCAGAATTTagatttgtcactttacagTCATAACTAATTAATGTAAGAATTTAGGAAAATCTCAGTTTGCTTTTTGCCCAATATTGTTACTGTCGCTCCACATGAACTTTGGAAGAATGGTTTCCTGTGGTTTTGCTACTTGCTAGAATGAACACCCAAacactttacagctttacagcttGGACTGTCATTAAGAGTAGccaatgtggttttttttttgttgttgtttttttcattgctcAGTTCAGACAATCTAAGTCTGTATAAGTTTGTTTATAAGAGATTATAAACTTCCTAAGTGTTGCTGAGTCTCACTTTTGATGAGGAACTATACTGAGGAAGTCAGTATAGTTTATATCAAGTTTTGTTTCACTTAAAGCTTTCTGTGAATAAAAGTATGtgtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363205 lncRNA upstream 84862 12437199 ~ 12448374 (+) True G306479
TU363193 lncRNA upstream 237507 12295369 ~ 12295729 (+) True G306470
TU363175 lncRNA upstream 243479 12284951 ~ 12289757 (+) True G306452
TU363151 lncRNA upstream 378686 12154295 ~ 12154550 (+) True G306433
TU363147 lncRNA upstream 381067 12143548 ~ 12152169 (+) True G306432
TU363232 lncRNA downstream 9681 12572422 ~ 12573759 (+) True G306503
TU363513 lncRNA downstream 235007 12797748 ~ 12797982 (+) True G306744
TU363525 lncRNA downstream 341467 12904208 ~ 12904841 (+) True G306756
TU363733 lncRNA downstream 633734 13196475 ~ 13283007 (+) True G306938
TU363732 lncRNA downstream 726048 13288789 ~ 13293439 (+) True G306937
XM_034314397.1 mRNA upstream 5958 12496309 ~ 12527278 (+) True timeless
XM_026932900.2 mRNA upstream 5958 12496309 ~ 12527278 (+) False timeless
XM_026932892.2 mRNA upstream 47261 12474056 ~ 12485975 (+) True prph
XM_026932875.2 mRNA upstream 78915 12434509 ~ 12454321 (+) True suox
XM_026932874.2 mRNA upstream 78915 12434512 ~ 12454321 (+) False suox
XM_026932786.2 mRNA downstream 22384 12585125 ~ 12595797 (+) True pmela
XM_026932417.2 mRNA downstream 36328 12599069 ~ 12606053 (+) True cdk2
XM_026932919.2 mRNA downstream 45612 12608353 ~ 12626608 (+) True sarnp
XM_026932714.2 mRNA downstream 131545 12694286 ~ 12775144 (+) True iars1
XM_026932434.2 mRNA downstream 226751 12789492 ~ 12956445 (+) False atp2b2
TU363207 other upstream 70700 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1017423 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1052136 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1206876 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1217800 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1808047 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1951869 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3926620 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3926620 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 4698238 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile