RNA id: XM_026932945.2


Basic Information

Item Value
RNA id XM_026932945.2
length 3742
RNA type mRNA
GC content 0.44
exon number 17
gene id nol8
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13776496 ~ 13792919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCTGGTACTAGTTTCTACTCCGGAACCGTTTAATGTGACACAGGTTAGTGAGCGACATGTGAGAAGTCAGACTGCAGTGTAAATCGCATTTAACAAGTTCtcgtttaattttttttatttattcagcaaaCCGGAGCTAATTAATACTAAACAGATCGAATCATGAGTGGTGAAGCATGAAGCGGCTGTACATCGGTGGCTTGAGCcacacaatatctcagaaagaTCTCCGAGATCGATTCGGGAAGTTCGGTGAGGTGTCTGATGTGGAAATAATAACACGGAAGGATGAAAGCGGATCTCCTCTGAAGACCTTTGGTTAcgtgaatataaatatttctgattcTGACTACAAAAGATGCATCACAGTGTTGAACAAATCCAAATGGAAAGGTGGAACATTACAAATCGAATTGGCGAAGGAAAGCTTCTTACACAGACTTGCAGAGGAGCGTCAGCAAGCAGCTGAGAAGATTCAGACACCGAAGAttgatgcaaaagaaaaaatcttGGAGTCCCTTAAGGCAGCTGGTGTAGAGGACTTCCACATGAAAGCAGCTGTTCCAGGAACTGAGATCCCAGGACATAAGAATTGGGTGGTGAGCAAATTTGGAAGAGTCCTTCCTGTAGTTCATCTGAAATATCAAGGCAAAAAGAAGGTCCTCAAGTATGATCCATCGAAGCATTGCCATAATATCAAGAAACTTGAAACCGAGGACGGCTTTACTCCAGTGTCCAAACTGACGTGGCACATAGACGGTGGAGATGACGAGATCAGCAAGAGAAGACGGGGAGAGTTCCCGCCACAGAAAAAGCGTCCCACGAAGACCAAAAAGAGTTTGGACCCAAGCACTATTCCATATTCTACAACTGCTCGTGAGAGGGGGCCAACAGTGCAGAATAGAGATAGTGCCCCATGTTTGCTGCAAAGTCGTAAGCCtcccgtgtgtgtgttagacagcgATGCTGACTCGGAGGATGAACTCCGGATGCTAGTCGCACAAGAACTTTCACGAAACCATAAACCAGTCGCCACAGAGGATGAAGGAAACCTCGAAGTAGTGGGTGATGACTTTGCTGTGAAATCCAACATGTTCTGGGGTGGAGGGGAATCTGGCATCATTGCACAACTTGGTTTAAGACCTCCAGAGAATGATGAGGAGTACGACTCGGCTGACACAGATGAAATATTGACTCAGAACAAAAATTCAGGCAAAGCTGAAGATCTAACTGAGACCGGAACAGGCAGTAATAAGTCGCCTGTAAAGTCCAAGAAGATTGATGGGAAGAAGCCTGCAATCAAAAACAATCAGACACCTACTGAATCAGAGTCGGATAATGACGCCGAATCATCGAGTGAAAGCACTGATTCTGATTACGAAGCCATGATGGGAAACTGCCACAGGATGGAGCTGTCACTAGCAGATTTGGAGGATCTTGTTAAAAATATGGAGGATGAAGAAAGCGACGACGACGCAAAGGCAGGACCAAGCAAAATACCCAAACTATCTCCTGTACATGAAACTGGGCCTCAGAAAGTTCAGTCAAAAAAGACCGGCATAACCCCTGAGGATATTTTAGCATCTCTCTTCGGACCAGATGAGGACaaagagatgaaaaagaaaaaagacaaaaagtcgTGTCTTCCTGCTTTTGTTGGGACGAAGGACCTTTTTGGTAGCATTGCCATACCCACTGGACTTAAGAGAGCAGCTGAAAACGTGAACTGTGAATTTGGTGAGGAACCTAAAAGACTAAAACCAGGCTTGAAAACACTGGAAGATGAAGAGTCATCAAGTGCACAGGTACCTATGCTAAACGAGAAAGACACCACAGTCTGCACGGATTGTTCCAGTGATGAAATGGAAATGACTCAAGAACCAAAGAAGCTCATTTCTAAACCAAGTTCTTCCCTAAAAGTAAATGACAAGAGACTTTCTGTGCCTAAACATCCAACATCTTTACCCGAGACTAAACACTCACCCAGGAGTTCATCcagtgatgaagaggaggaagaacaAATTGTCCCTTTAGAATCCAAAACTTCAAACGCTTCTGATAGCTCCGGGTCCACTGAAGAATCAGAGATGAGCAGCAGTGAAGAGGAGGACAAAAGTAATAAACCAGAAGCAGCCTCAAAGCCTAGTTCTAAACAGATTAATGAAAACACTGCTTCAGGTCTAAAACCATTAAAGCAGTCTGTTTTAGACCCAGTGAAGCAGCAGCAGGACAATCAGAAGCGACTCGCTGCTTTGGAACAGAGGCAGAAAGAGTCCGAGCAACAGAAGAAGCTCATACAGGGTGCTCTCTCGAAAGTGGATTTGCCGAATGCAAACAAAGGGAAACATATTGTATTTGATTCCGATGATGAAGTTAATAATGACAGTGAAGACACAGCACCCCAAAAAGTGAGCCTTTTTGATGAAGAttctgatgaagatgatggacTAGGATCTGAGGAAAAACAAGACCACAGAGAAAAGGAATTGAAAAAGGCAGGGGGCAGCAAACTGTTCGACAGCAGTGAGGATGACGATGATGGCACTGAGGAAGATCGCTTCAAGATCAAGCCTCAGTTTGAAGGCAGAGCTGGACAGAAGCTCATGGAGTTGCAGTCCAGATTTGGAACTGATCCAAGATTTCAGATGGATGCCAAGTTTCTTGAAAGTGATGATGAAGAACAGGAGCAAGaTATGGAACCCCTGCAAACACcaggagaacaggaacttgttgaagagaagaagaaaaatctgtcCATCCTGCAAAGTGTCCTTAATGTCAGCATTCAGCCAAGTGACGCAAGTAAAGGGGCGACAAAAGGCAAAATCTTCAAGGACATTTCAGCTCTGCACTACGATCCCTCAAGTGAGACTCATGCAGCTTTTGAAACCAAGACGGACACGCCAAAAAGAGAAAGCAAAGCAGAAAGGCGAAAGAAACGAGAAGAGGCCAAGAAGCTTCCAGAAGTTTCTAAGGACCTCTTCTATGACGTGACTACAGATCTAAAAGAGGCATTTGGGACGGTGAAAGAAATCCAAAATGAAAAGAAGGAAGTTTCATGGGAccaagatgatgatgagaacaTGGAAGAAGCACCACAAGAAGCCTTGCccgcattttcattttcatctaaTCAAGAATCAGAGCCATCAAGCGGATTTAAATTCTCTTTCTTTGGAGATGACACAGTAACAAAGACCCCTACAACAGATGAATACAAAGTTGAGACTATAAAAGGGGCCAAAGTGGCTTGGCAAGTAGATCCTCGATTCCAGGACAGCAGttcagaggaggaggaggaggaggatgtggaggaagagaaagaagaaaaggaagaggcTGCCTTGGTCACTACAACTGAACAGCCGGCCCCGAAGAaaaagttcttcttcttctttgaggATGACATCCGGTTGAAGGAGGGACCTCGTATGTTCTGCAGACGTGAGAAACTGGAGGATCAGAGAGAAGCAtgggaggagaagaggaaagaaCTCCGAGAGGATTACCGCAAGAAGCACAAAGATGCCAAAAGACGATTCAAGATGACAACAAAAACCTGAACCACAAGAATGCACTGCCTGACGTTGCTTAAATAAAGAGTTTTATTATCAAAGTTTTGTTACCACAGAAACAATGAATATTCAGTTTTCTTTCACTGCTGTAATTTAATACCTCAACATTCTCAACATATTTGTGCCTGTGAATTAAAAgctgtgtaaataaatttgttttcacAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU364036 lncRNA upstream 83716 13691106 ~ 13692912 (+) False ippk
TU363977 lncRNA upstream 252574 13522009 ~ 13524054 (+) True G307161
TU363969 lncRNA upstream 274797 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 425948 13350453 ~ 13350680 (+) True G307079
TU363759 lncRNA upstream 443380 13332806 ~ 13333248 (+) True G306961
XR_004580226.1 lncRNA downstream 147507 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 210689 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 222243 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 258916 14051835 ~ 14058202 (+) True G307293
TU364114 lncRNA downstream 303351 14096270 ~ 14096786 (+) True G307281
XM_034314437.1 mRNA upstream 19105 13753968 ~ 13757523 (+) True ogna
XM_026932584.2 mRNA upstream 27895 13745004 ~ 13748733 (+) True omd
XM_026932583.2 mRNA upstream 43346 13725860 ~ 13733282 (+) True aspn
XM_026932582.2 mRNA upstream 54908 13705721 ~ 13721720 (+) False ecm2
XM_026932646.2 mRNA downstream 23936 13816855 ~ 13833491 (+) False nisch
XM_026932645.2 mRNA downstream 23936 13816855 ~ 13833485 (+) False nisch
XM_034314228.1 mRNA downstream 23936 13816855 ~ 13833485 (+) False nisch
XM_026932644.2 mRNA downstream 23936 13816855 ~ 13833485 (+) False nisch
XM_026932648.2 mRNA downstream 23936 13816855 ~ 13830455 (+) False nisch
TU363207 other upstream 1314092 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2260815 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2295528 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2450268 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2461192 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 577869 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 721691 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2696442 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2696442 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3468060 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile