RNA id: XM_026932957.2


Basic Information

Item Value
RNA id XM_026932957.2
length 1926
RNA type mRNA
GC content 0.42
exon number 6
gene id cdc42
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19349748 ~ 19363983 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atTTCTGCTGAGTAAAATGGCGCTGTTCCGCTGAGGGCGCGTGCCCCTGCTCTTATGCCTAGGAAACCCCGTGCGCGAGCTGCCAACGCCCGGCgcagagaaacaaacagagcGGAATACGATCTTGAATGAGAAGAGTGGACtgttaaacaaaaacagagCACAGTTATGCAGACGATCAAGTGCGTTGTCGTTGGCGATGGTGCCGTTGGTAAAACTTGCCTATTAATCTCCTACACAACTAACAAATTCCCCTCTGAATATGTACCAACGGTCTTCGATAACTATGCAGTCACGGTTATGATTGGTGGAGAACCCTACACCCTGGGACTGTTTGACACTGCAGGTCAGGAAGATTATGATAGATTACGACCTCTGAGTTACCCCCAAACAGATGTCTTCTTAGTCTGTTTCTCCGTCGTTTCCCCTTCTTCATTCGAAAACGTCAAAGAAAAGTGGGTACCGGAGATCACCCACCACTGTCCAAAGACCCCCTTCCTGCTTGTGGGGACGCAGATCGATCTGAGAGACGACCCGTCCACCATCGAGAAACTCGCGAAGAACAAACAGAAGCCGATCACCCCGGAGACGGCCGAGAAGCTGGCCCGAGACCTGAAGGCCGTCAAGTACGTGGAGTGCTCTGCTCTCACGCAGAAAGGCCTAAAGAATGTATTTGACGAGGCGATTTTGGCAGCCCTGGAACCCCCTGAGCCCAAGAAGAAGCGTAAATGTGTGCTGCTATGAGcgcccttttctttctctctcccctcctttCCTCTGCTAAGGCTGGCCAACAGCTTTGTACTCTTAAAAAAGCaatgcctaaaaaaaaaaaagaagtgagttaaaacattttttttgctctgcaaTAAATATAATCTAAAGAATACcctacacacacgcgcacacacacagggcttgGATCAGTTTTTGAGCTCCGTATCATCATACCATAGATTAAGCGAGATTTACGTTTTAAAGGTGTTACTTCACGGTGAACCGCAGAGATGTGGATTTTGTCATTTAACCAAGTTTTTAACGGCTACTTGCTCACTGATGCGTGGGGTGGGTGCAGTTACTAGCATGAGAGGCTAGTAGTTTTGTGAATCCTCCTGTGTAGTTGGAGTTAAACTTCTAACCTCTACTTTTACACTAGATTGTCACCAGaagtgcttgaaaaaaaaaaaaaaaaataaaatcctcttTCTTTGCCAATATCCCCATGTCGTAGGCGGTTTGAAAGAGTAACCATGTAAATAAGAGCAGATTATAAAGGACTGATCACAAAGAATCGGGTTTTCTCACGCAGGGAACTTTTAACAGTGTTAGCAGAACAAGCGGCGTGTCCTAATGCATTGCCAGGGACcacagaagctttttttttttcttctcagaaaACTTGTAATGCATGGAGGTTTCCTTTACATAGGTTAACtacttctttaattaataataatgtaagcTGACAACATGTTGTAGACTCCACGTGTTTTTACCAAAATGTCCCCCTCCTCaccccctctttttttttgttgttgttttttttttttttttttttttttttttcttttcttttctttaatggTTGTCACTTTTTTGTGTTCTTCATTTATGGGCCGGATCCCAGCGAAACACTGATCCACCTGTTATTTAAAGGgcgacacacacaaaaaaaataaataaatagtgataAAAGATCAAATTGAACCTTCGCTTTTCCCCTCAATGACTTAACGGAACCATGTTTACTAGTGTATGAGTTGCCCAGGTGGATCAAGGTTGATCTGATTTCCTGTCGTTTATCActcgttttgttttgttttgttttcattcagtgtAAGACCAAATGCTATGTATGAAGTCTGTcctttgtactgtatatgcattcttttaaagattattaaacttataCCTTAATTGccttta

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367980 lncRNA upstream 227692 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA upstream 236721 19110129 ~ 19113027 (+) False G310703
TU368000 lncRNA upstream 236721 19110129 ~ 19113027 (+) True G310703
TU368001 lncRNA upstream 236721 19110129 ~ 19113027 (+) False G310703
TU368005 lncRNA upstream 236721 19110129 ~ 19113027 (+) False G310703
TU368130 lncRNA downstream 130867 19494850 ~ 19498671 (+) False svbp
TU368131 lncRNA downstream 130867 19494850 ~ 19498671 (+) True svbp
TU368163 lncRNA downstream 197200 19561183 ~ 19561390 (+) True G310828
TU368205 lncRNA downstream 353098 19717081 ~ 19717329 (+) True G310870
TU368221 lncRNA downstream 447455 19811438 ~ 19811735 (+) True G310882
XM_026932959.2 mRNA upstream 6685 19337932 ~ 19343063 (+) True c20h1orf50
XM_026932561.2 mRNA upstream 290205 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932563.2 mRNA upstream 290946 19042582 ~ 19058802 (+) False mfsd4aa
XM_034314408.1 mRNA upstream 312080 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA upstream 312080 18979997 ~ 19037668 (+) False cdk18
XM_026932871.2 mRNA downstream 130775 19494758 ~ 19498061 (+) False svbp
XM_026932869.2 mRNA downstream 130924 19494907 ~ 19498061 (+) False svbp
XM_026932870.2 mRNA downstream 130925 19494908 ~ 19498061 (+) False svbp
XM_026932872.2 mRNA downstream 131019 19495002 ~ 19498061 (+) False svbp
XM_034314372.1 mRNA downstream 131094 19495077 ~ 19498061 (+) False svbp
TU367971 other upstream 261942 19087025 ~ 19087806 (+) True G310681
TU367680 other upstream 657734 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 657734 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 2086085 17260979 ~ 17263663 (+) True LOC113537865
XR_004580182.1 other upstream 2855609 16489361 ~ 16494139 (+) False amigo3
TU368136 other downstream 144272 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 405007 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 405007 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1506669 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile