RNA id: XM_026932959.2


Basic Information

Item Value
RNA id XM_026932959.2
length 1466
RNA type mRNA
GC content 0.41
exon number 5
gene id c20h1orf50
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19337932 ~ 19343063 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAGGCTTGCAAAGTTGTTTTGCCGAATCAGTATATTTATCAGACTCGCTGGTTCTGAAACGTGAATGAAAAAAGAGGTTGAATGACACATTTGATAGTATTTTAGCTAGAATTAAATCTTAATATCAGCAAAATACAAGTGAACATTAGCGCTGCGAAATGGATAAAGCAGTCAGTTTACCGAATCAGCCTGACAACTTGAGCGCAGTCACACTGGTGGAAACCAACAGCAATCCAAACGGACTGGAGCTGGTGAGCTCTTATCACACCAACCGAGTCGGAGATCCCATGGACCTCGTCACTCTGGCTCAGCAGGTTCAGAAGGGAGACGAATTTGTCCGAGCAAATGCTTGCAACAGGTTGACCGTCATTGCCGACCAAATAAGATACTTGCAGGAGCAAGCGAGAAAGGTGTTAGAGGAAGCTAAGAGGGATGCTGATCTCCACCATGCAGCCTGCAATGTTGTGAAGAAGCCAGGAAACATGTACTACCTGTACACGCGTGAATCTGGCCAGCGTTACTTCTCTATACTCTCCCCGAAGgaATGGGGTCCTAGTTGTCCACACAAGTTCCTCGGCACTTACAAACTGCAGTACGACATGTCCTGGACTCCGCTAGAAGATGTTGAAAACCGGGAAGCTGAAATCAGTGTAATGGACAAACTCCTGAACAGTCAAATCGCTCTTCCATCCAGCGCAGAACCAAACTTCGAGGGTCTTCCAAACTGACCAgacactgagtgtgtttacatgtacaaCATAATCAGATAACTGCAATAAATTGAAATTAAGATTGtcaatttaaacacatttacaggAAATGAAGTAATCAGATAATGGGTGTACATGGACGAGTCAGTAGTCTGTAATCTGTTTCTGTACTAAACCTACAGAAGAACGGACGTGCTTTATTGTTTATATCGGGGGTTTGTGGTTGCAAATTACACACAATGCTGCCCTTCTTTGAGCCGTCTCaagttttaaaaagatttttagtgCATCAAGCCAGATTAACAGTATACATGCACCAAATAACctgattttaaacaaacatccaGACTCTATTATAAGCCTAATCCGATCTAAATGATCACACCATGCTGTTTACACGGCCACTTGAATGATCTAATAATTCAGATTATACTTATAATATCAGCATTAGTGTGCAATGATAAGGGGCTACTTTATAATGTGGTCATGAAAAAAGCCATTTTGGTTTTCTCAGATATGACTGGGATGAATTGGGACATGGGAATGTTCAGCACTACAcagtaaagtgtaaaatgttctgtatttaatattctgtggaaggagtctccagtgtcagtgctttgtaacatttttttttttttttaggtccaTAGTTCTAAGCTGTTGTTACTGTGTGTAATGATCTGCCCTAACAGTACAACACTGCTGCttgtaatttaaaaagaataaaaatgcaattgtccgattgtatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367980 lncRNA upstream 215876 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA upstream 224905 19110129 ~ 19113027 (+) False G310703
TU368000 lncRNA upstream 224905 19110129 ~ 19113027 (+) True G310703
TU368001 lncRNA upstream 224905 19110129 ~ 19113027 (+) False G310703
TU368005 lncRNA upstream 224905 19110129 ~ 19113027 (+) False G310703
TU368130 lncRNA downstream 151787 19494850 ~ 19498671 (+) False svbp
TU368131 lncRNA downstream 151787 19494850 ~ 19498671 (+) True svbp
TU368163 lncRNA downstream 218120 19561183 ~ 19561390 (+) True G310828
TU368205 lncRNA downstream 374018 19717081 ~ 19717329 (+) True G310870
TU368221 lncRNA downstream 468375 19811438 ~ 19811735 (+) True G310882
XM_026932561.2 mRNA upstream 278389 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932563.2 mRNA upstream 279130 19042582 ~ 19058802 (+) False mfsd4aa
XM_034314408.1 mRNA upstream 300264 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA upstream 300264 18979997 ~ 19037668 (+) False cdk18
XM_026932834.2 mRNA upstream 534030 18790926 ~ 18803902 (+) True si:ch211-112f3.4
XM_026932957.2 mRNA downstream 6685 19349748 ~ 19363983 (+) True cdc42
XM_026932958.2 mRNA downstream 6685 19349748 ~ 19361222 (+) False cdc42
XM_034313986.1 mRNA downstream 6902 19349965 ~ 19363983 (+) False cdc42
XM_026932871.2 mRNA downstream 151695 19494758 ~ 19498061 (+) False svbp
XM_026932869.2 mRNA downstream 151844 19494907 ~ 19498061 (+) False svbp
TU367971 other upstream 250126 19087025 ~ 19087806 (+) True G310681
TU367680 other upstream 645918 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 645918 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 2074269 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2836248 16489361 ~ 16501684 (+) False amigo3
TU368136 other downstream 165192 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 425927 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 425927 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1527589 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile