RNA id: XM_026932971.2


Basic Information

Item Value
RNA id XM_026932971.2
length 6878
RNA type mRNA
GC content 0.46
exon number 46
gene id fer1l4
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11107291 ~ 11140313 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggaaaaaaatggttCCGTTTAGTCATCTGTTGATCCTTGCGTCGTCGTTTTTCGCACTTCCTACCTGTCGCATTACCATGTGCAAACAGTGGAAACTAAAACTACACACCTGAGTGGAGGTGAATTCATTCAGGAGACAGTCTTATGCACGTTCTCATTGTTCAGTAACTACACTGAGAAGCTCGGCTGTTTACAGGCCTCAGTCCAACCAAACCAGTCagagtaaaataaaactttcttctgagctttttcatgtttctttaaaTGAACAGAATAGATTCATGGAAGCAACATGTTAACTAGTAGGACAAGAAGGTAAAGAGATGCTTCAGGACTGGTGAAAGACAATCTGCATCATTGAAACATGTCTATTGCTGTCCATCTGAAGAAGATTTCTAATCTACCTGGAAAATATGACCGGAAAGTGGAATTGTCTTTTAGGGATTTTACTCACAAAACCAAGATTCTCCAATGTGAAAATATAGCAATCTTTAATGAGCACTTCAGATGGCCACACTATGGGAAAATCGTGAAGAATGAAGTGCTCTCCATCAGCGTGTACAACTGCAGCAAGATATTCAATAACAGgctgcTGGGGAAGCTGGTGATCAGTCTGCAGCATGTGGTGACAGCAGGAAGGCTGGTCCTGAGGGAGCCTCTCACAGACAACAACCACAGCTTGACTGATATATATGTGGAGTTAGACGTAAGGTACCACCCTGTGCAAGGTGCAGCTGGGGACTGGACCAGTGAAGACTTCCTTAAGGTGGAGGATAGTGATGAATCAGGTCTTGTGATTAGAAACACAGGCTTTCTTGAACCTGGAAACCTGAGGCCCCAGCAGCTGGATCGAGAAGCCAGGACACTTGGCCGCAGTTTGGTAAAAACCGACAACGAAGATGgagatgattatgatgatgatgacgactatgatgatgattatgatttttCAGACATGGATTGTGCCAATATGACATTCACCCCCATCTACAGcCGATGTGCACCTTTATCCAAGCATGAACTTGCTGTTGCCCCAAAAGTCAAGTCATTCCAGGTAAATATCAATGTGATAGAGGCTCAGAAGTTGGTAGGTGTAAACATCAACCCTGCTGTGTACATCACTGTAGGAGATGAGAAGAAACATACAGTCACCCAGAAATCCACAAACTGTCCATTCTTTAATGAGAACTTCATGTTTGAATTTCAGGAGACACAGGATGTGCTTTTCGATAAAGTTATTCAGATTTCTGTTGTTCACAAAAAGATGCTTGCATTTTTGATGACCCACATTGGCTCCTTCAAGATAGACATCAGTACAGTCTACCAGCAGCCAGaCCACCGTTTCTACCAGAAATGGGCTCCACTCACAGACCCTAAGGACACACGCTCGGGGATAAAGGGCTATGTGAAGTGCACACTGAGCGTTATGATGAAGGGGGACCCTATGGGAATCGCCAGTCTGCCTCCTGCCACAAGTCAGAATGATGACATTGAGAAGAACCTACTGCTTCCTAAGAGGATGCCAGTGGAACGACCATGGGCCAAGTTCCTGCTGAGGATCTACAGAGCTGAGGACCTACCCAGCATGAATGCTGGTTTTCTGGGCAGCTTCTCCAAAATGATGGGCGATAAAAAAGTCTTCATTGACCCTTATGTGCAGGTCACATTCGCTGGCCAGCAGGGAGAGACGTCAGTGGAGAGCAACACCAATTCACCTGTGTGGAATGAGCAGATCTCCTTTATCGAGCAGTTTCCTCCCCTTGCTCGACGAATCAAAGTTCAGATCCTTGATGATGCCAACATTGGCGATGTAGCTGTGGCCACACACTTCCTTGACCTCCAGCAAATCTCAAACCCCAACAGAAATGGGTTTAATCCAACTTTTGGCCCGTCATGGATCAACCTATATGGGTCACCTCAAAACTCCACACTGCGCGACATCCATCGTGACCTGAATGAGGGCCTGAGTGAGGGCATCTTCTACCGGGGAAGAGTGCTGCTGTCTCTGACAGTGGAGGTTTACTCATCCCCTGCTGTTGCTGTAGTGGAGAGCAAAGCCATTGCCAGCGTCAAGAGCACGCTGAGCAAACTTACGTTCAAGCGGAAAAGCAAGAAGTCCAAAGAAAAGAAGGCAAAAGACAGTGATGGCATGCAGGGTCGCAGTGGTCCTTCTGAGGAGTCGGAGGAGGCCACATCTGAGGTTCCAGCAGCTGTCACTGTTGAAGTGGAGGAGATTCATCCTCTTCCTGAGAACTTCGCAGGGGAGAAAGAGGAATTCTTGCTGTTTGCATCATTCTTTGAGGTGACCATGATAGATCCGTCCATTGGCTCCAGATATGTCACCTTTGAGCTATCTATAGGAAACTATGGCAAAACAACAGATGTGGTAGTAAAGAGTGAGAAGGGCAGTGGTCCGGATGATGTGGCAGATGACAGACAGCCTCTGTTAGAGTCAGAGGATGAGCTGGAGAGACAAGAGCTGCCTGTGCTGGGCTCTAGGGACCAGTCTGTTACGGTACCCAGGAGAACACAGCCCACTGAATATGATGGGTCATTCCGCTGTATTCCCTTGCTTCGTGAGAAACCATGTCTCTATGTGTGGAACTATTTTGAGGACCACACCTTCCGTTACCACAACTGCAACTGGCTGTCCAAGATGGCTGACAGACTGGAATTTGGCCTTGATGAGGTAGAAATGCTCTTAAAAAGACCAAGAAGTAATGCTAAGGAGCGCTTGGTGGAACTCTTGTTGGAGTTTGTTTCCACCTGCAAACAGTACAGTGCAAGCTTGGACAGGAAACGGCAGTCTCGGCCAAACAACCTCGACAAGTGCCGCACAACCTTCATTAAGAGAAACATAATCATTCTGGCCAAGCAAGCTCTGAGAGTGCAGAGGAGGGTGACACGACGTACAGTCCGAGAGAAGCTGGCTGATGTCAGGCGCATCCTAAAGAGAATACACTTCCTGGCTAAAGAGCCCCAGAGCACTCTGCCTGATGTGTTCCTCTGGATGATGAGTGGAGGGAGGAGGATAGCATATGCCCGGATCCCAGCACACTCCATTCTTTTCTCTCTggtggaggaagagaaaggCAAAAACTGTGGCAAAATCACATCCATTTACATGAAGACCCCTGGAGGACCTCTGGGTGAGATCTTTGCAAAACTGGAAGTCTACATGTGGCTTGGTGTCACCAAGTATTCGAAAAACTGTGTCACAAGCCTGCCTTCTGAATTCAGGCCCATATATGAGGCAGCAACTTTTGGGACCCCAATACCCCCAAATATGCCCCCCACTAAATTAGCTGTGGATGACAGTCGTTATTTCCAGCTCCGTGCCCACATTTACCAAGCACGTGGCATCATTGCTGCGGATGATAATGGCCTCTCAGACCCTTTCACTAAGGTTGTGTTCTCCACTCAGTGTCAAGTTACACAGGTAATGGAGGAAACTCTGTCCCCAACCTGGTGTGAGTTGCTGTTGTATGATCAAATCCTCATGGAAGGCAGTAAAGATGACTTCAGGGATGACCCCCCTGTGGTTATCATCAATATCTACGACTATAACAAACTAGGCAGTCCACAGTCCCTAGGTCGAGCATTCGCTGAACCAGAGCTGAAATTTGTGGAGGAGCCATATAAGAAACCCATGCTGAAGTTCTTTGACATCACTAAAGGGAAAAGCAAGGCTGGAGAGCTACTGGCCGCTTTTGAACTTATCGAGCTGGATTACACTGGCTTCGGCGAGCCAGTCCTGCCACTGGATGTGGAGCCCAGAGAGCCAGAGTACATGGAGTCAGAAAGGCATTACATTATCCCAGAAGGAGTGCGGCCCGTTCTAAGGAAATTCAGGATAGAGGTCCTGTATTGGGGTCTGCGGGACCTGAAACGTGTGAACCTGTTTGAAGTGGAAAAGCCTCAGGTTCGGATGGAGTGTGCCGGGCAGTTGATTGAGTCAGAAGAGATTGCAAACTACAAGCAGAACCCCAACTTCAGTGAGATTGTTAAACACTTTGATGTGGAGCTTCCAGAGCTGGTGTACCTGCATCCTCCCCTCACCATCTTTGTGATGGAACAGCGGGCATTTGGGCGGCTGGTGCTGGTGGGGACTCATGTTGTGCAGAGTCTCATGCACTTTGCACCCAAAGACCTGGATGACTGGAAGGAGGACGATGAGGAGGAGCCACGTGAGGagaaaaaaactccaaaacaaaacacccCTCTTCAGACAGTTATGAGCATGGACCTGAGAGGACTTCCTCTAAAAGACACAAAAATTCCCATTAACCCTATCAATCTAGTCACAGCTCCACTGAAAGCAGTCACCAAGAAGCAGGAAGAACTTGAAGAGGAGGAGCCAGAAAAGGAAGAGCTTGATTGGTGGTCTAAATATTACGCATCACTGGAGGAACTTGACAAGCAGgaGGAAAAGGATGATGAGCTTGATGATGCACAAGATGTAGAGGGAGGAAACTTTAACATGTCTTCTTTAGAAGCAGAGGAGGATAATGCTGTGATTGTTGACATAGAGCCACCCAAaccaaagagaaagaaaattgcTACTTTAAAGCTATACAAGTCAGAGCTAGAAAATGAATTCAGTCAGTTCATGGACTGGCTACACACCTTTCCCATCTACAAAGGCAAGTCTAATTGTGacgatgaggaggaggatgaaagTGAAAGGACCATGGGCAAATACAAGGGTTCTTTTCTGATTTACCCCATTGCCCCTGAAGATGAGGACATTGACTTCCAGATCACTAATGGAATCCCCAAAAATTCCCCAGTCAAAATCCTTGTCCGTGTGTATGTGGTAAAGgccacAAACCTGGCCCCAGCAGATCCAAACGGTAAGGCTGACCCCTACGTGGTGGTGAAGGTAGGACAGCAGCAGCTAGACTCTAAGGAGCGCTACATTCCCAAACAACTGAACCCTGTGTTCGGAGAagtGTTTGAGCTGACTGTGTCCTTCCCTCTGGAGACGGAGCTTATACTGACTGTGTTTGACCATGACTTGGTGGGATCTGATGATATGATTGGAGAAACACACATTGACCTGGAGAATCGTTTCTACAGCCGCCACCGAGCTATATGTGGTCTCTCACTGCATTATGACAAGGATGGCTATAATAAGTGGCGAGATGCCAAGAAACCCTGCACCCTCTTGGCTGAACTCTGCCGCAAGAATGGGATTCCCTCCCCTGAGTACAGAGAGTCAGCAGTCAAAGTTCTcaacaaaatattcaaaatccCAAATGAGGATTTTCCAGAAGagctgctgaagaagaacaagaagacgGAGGAGGACTATGAGGAGATGGACCAGCACAGGGCCCTGAGTGTGCTTCATCGTTGGGGAGAGATGAGAGAGTTTTGCGTGGGAGCATGTCCTCTGGTACCTGAGCATGTGGAGGTCCGATCACTGCTAAACCCAGACAAGCCCGGCCTGCCCCAGGGCTATGTTCACATGTGGATTGACATGTTTCCTGTGGATGTACCTGCTCCTCCTCCCGTCAACATCAAACCCAGACTCCCCATAAGCTATGAGCTCCGGGTCATTATTTGGAATACTGACGATGTTGTCCTGGATGACATTAACCCTTTTACAGGAGAGCCATCAAGTGACATTTATGTTAAAGGCTGGATTAAGGGACTGGAGGATGAAAAGCAAGAGACGGATGTGCATTTTAATTCGCTGACAGGAGAAGGCAATTTCAACTGGCGCTTCATCTTCCACTTTGACTACTTGCCCACAGAGAAGGAGATCacatataaaaagaaagagtCCATCTTTTCTCTAGAAGAGTCAGAGTTTCGGCAGCCTGCTGTGCTGGTGCTCCAGGTCTGGGACTATGACCGCATTGGTTCCAATGATTTCTTGGGTTCTATTGAACTGCGACTGAGTGATATGGTCCGTGCAGCTAAATCCTCTGAGCAGTGTAGCGTGAAGATGGCCAAGGACAAGGCCAGCCCACGCTTCTCCATCTTCCGCAGCAAGAGGATGAAAGGCTGGTGGCCCCTCATCAAACTGAAGAGTCAAGAGGACAtcgagagggaggagagagaggctgaactagagaagaaaaagaagaagaaaaagaaaaagaagcagagCAAACGCAGCAAGATGAAGCCAGAAGACCTACAGTTTGTGGACAGCAGTGGCAACACTTTCCTCTTAATGGGCAAAGTTGAGGCTGAATTCCACTTGGTGACTGCTGAAGAAGCTGAGATGAACCCTGTGGGCAAAGCACGCAAGGAACCAGAGCCACTAGATAAGCCAAATCGCCCCAAGACATCTTTTAACTGGTTTGTGAATCCAATGAAGACCTTTGTATTCTTTATCTGGAAGAAATACAAGAAATACATCATCGCTTTGGTTATTCTGGCAATTCTGGCACtgttcctcttcctcatcttgTACACCTTACCCACACACATCAGTCAGCTTATTGTAAATGGCTGAAGTGAGAGGAAACATTTATTGTGACTGATTTGTAAGGAAGATGGCAACAGTAAGAACCTATCTGCCAATATTACGCTGCTCAATATCATGATTTTAAACTATTCCTTATAGActgaatgaatgtatttattccCTAATTTCCTACACTAGATTACTGACTGTTGCttttaaatgtatgattttaaaaattttaataattttaaatgttttttctctAGTTAGAAATAATGATATTTCTAGTGAAATTAGTGTTTGCTAAAGCTCTCCTGCcatggtatttttatttttttttttttggaaaaattgtAAACAGCTTGCACAgtgtaaaatattcaaatgaagTTGAAGCCCTCACTGAAATTAAAGTTGTTAGAAATGAGACTGTGGAATAAAAGATTCACAATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403810.2 lncRNA upstream 31701 11073762 ~ 11075590 (+) True LOC113538022
TU362371 lncRNA upstream 31748 11073895 ~ 11075543 (+) False LOC113538022
TU362373 lncRNA upstream 31748 11073895 ~ 11075543 (+) False LOC113538022
TU362259 lncRNA upstream 307060 10797969 ~ 10800231 (+) False G305642
TU362260 lncRNA upstream 308163 10797969 ~ 10799128 (+) True G305642
TU362514 lncRNA downstream 133272 11273585 ~ 11275616 (+) True G305849
TU362498 lncRNA downstream 158009 11298322 ~ 11300713 (+) True G305833
TU362499 lncRNA downstream 162977 11303290 ~ 11304633 (+) True G305834
TU362533 lncRNA downstream 170557 11310870 ~ 11312417 (+) True G305865
TU362532 lncRNA downstream 176874 11317187 ~ 11317500 (+) True G305864
XM_034314395.1 mRNA upstream 126 11079060 ~ 11107165 (+) False cpne1
XM_034314396.1 mRNA upstream 126 11079070 ~ 11107165 (+) False cpne1
XM_034314393.1 mRNA upstream 126 11079070 ~ 11107165 (+) True cpne1
XM_034314394.1 mRNA upstream 126 11092258 ~ 11107165 (+) False cpne1
XM_026932791.2 mRNA upstream 20598 11079081 ~ 11086693 (+) True rbm12
XM_026932893.2 mRNA downstream 923 11141236 ~ 11178126 (+) True unm_sa1614
XM_026932895.2 mRNA downstream 923 11141236 ~ 11178126 (+) False unm_sa1614
XM_034314494.1 mRNA downstream 74439 11214752 ~ 11221540 (+) True dynlrb1
XM_026932973.2 mRNA downstream 74681 11214994 ~ 11221540 (+) False dynlrb1
XM_026932751.2 mRNA downstream 83835 11224148 ~ 11235261 (+) True map1lc3a
XR_004580251.1 other upstream 333849 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other upstream 333849 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other upstream 333849 10768707 ~ 10773442 (+) False LOC113539694
TU362120 other upstream 594021 10512671 ~ 10513270 (+) True G305515
XR_004580200.1 other upstream 2548503 8501638 ~ 8558788 (+) False nfasca
TU362445 other downstream 28146 11168459 ~ 11178473 (+) False unm_sa1614
TU362496 other downstream 74702 11215015 ~ 11221515 (+) False dynlrb1
TU362531 other downstream 173871 11314184 ~ 11315436 (+) True G305863
TU362537 other downstream 185291 11325604 ~ 11326360 (+) True G305869
TU362623 other downstream 340356 11480669 ~ 11481100 (+) True G305955

Expression Profile