RNA id: XM_026932997.2


Basic Information

Item Value
RNA id XM_026932997.2
length 2232
RNA type mRNA
GC content 0.46
exon number 14
gene id mcrs1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12417610 ~ 12427033 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGGTGAGCGTCGCACGAACGTTCTCAAATGTTGCTGCCTTCACACAGCTGTTAGCAACACCCTTCTGTTTTTTATGTAGATATATGTATACAAATATTAGGAAAGACtaaattatttttgcaaaaaaaaatcatatttgttccatttgaaataaatgttatttttgtttcagtAACCTGCACTTGGTTAGCCTTCGCTAGAGCGTTCTGTCTCTTTTAAACAAAGgattagcattgttagcatgCTAACCGCTAACTAGCAAAACCTTTTTTAGTGTTTtgacaaatatttcaaatagtTAGCTCGGAAAATAGACATACAGGAAGTTTTCAGTGTGTATAATCTGCAATTTAAAGGCTTACGAATGCAGTTTTGGGTATAAATTCAGCGTTACGACGTCATGGAAaaagACGTTAAGGCAGATGCGGTCCCTGCAGTGGTTGGAGGGGTAAATGTGGCAAATCTGACAGCTCAGAGCAGGTCTGAGGATGAAGATCAAGCCATTGTGAAGGACATAAAGAGACCAGCAGCTCAGGCTTTCAGTGGAGGAGGTCTAGTTCCGAAAAGGAGAAGCTCTTCCAGgtcAATTAAGAGGAAGAAGTTTGATGATGAGCTGGTTGAGAGCAGTCTGGTTAAATCCTCCAGCAGGGTTAAAGGCCCACCAGGCATCGAGCCGATCCGCTGCCCTGGGGCCGAGCCATCGTCCAGTGAGAAAAAGAAGgtttccaagtccaGCACATCTTTAACTCCTCCTCTCACCATGGTGATCGCGCCATCCCCAATTACCAAACGAGTGAAGAAGAGCAAGCAGCCTCTGCAGATCACTAAAGACCTGGGACGCTGGAAGCCCACAGACgacctgctgctcattaatGCAGTGCTGCAGACTACAGATCTCACCTCAGTTCATCTGGGAGTGAAGTTCAGCTGCAGGTTCACGCTGAGGGAGATTCAGGAGCGGTGGTATGCTCTGCTCTACGACCCTGTCATATCTAAGCTGGCGTGGCAGGCCATGAGGCAGCTCCACCCCGAGGCCATCGCCGCCATTCAGAGCAAAGCTCTGTTCAGCCAGGTTGAGGAGGCTCTGCTCGCCAAGATTAGCTCTAACAGTCAGCCAAAACTCGAGGTTTTCCAGGACTTGCTGAATAAGCACCCCAACGTTTTCTACCCATCACGCACTGCTAAGAGTTTACTCGTGCACTGGCAGCTGCTCAAACAGTACTACTTACTGGACGACCAAAGTGTTCAGCCTCTGCCCAAAGCAGATCAGGTTCTTAACTTCTCAGATGCTGAGCAGATGGTCGACGATTCCAAGCTGAAGGACAGCAGAGATGAAGTACTGGAGCACGAGTTGATGGTTGCAGATCGGCACCAGAAGAGGGAGATCAGGCAGTTGGAGCAGGAGCTCCCACGCTGGCAGGTTTTGGTGGACAGTATCACCGGTATGAACTCACCGGATTTTGATAATCAGACGTTGGCTGCATTAAGAGGACGCATGGTCCGATACCTTATGAGATCCAGAGAGATCACCCTTGGCCGTGCCACCAAGGACAAACAAATAGATGTGGATCTGTCTTTAGAGGGACCAGCATGGAAAATCTCAAGGCAGCAGGGGATAATCAAACTCAAAAACAATGGCGATTTCTTCATCGTGAACGAGGGCCGTAGACCGATCTATATCGATGGCAGACCAGTCCTGACTGGTAACAAATGGAAACTTAACAACAACTCTGTGCTGGAGATTGCAGGGCTTCGATTCGTGTTCCTCATAAACCAGGagctgatctctcttatcaaagCCGAGACAGCCAAGATGAACCAGCAGTGATTCTCAAATGCAGCTGATCAGTCAGCTCAGGCTTTGTTTACTGAGTGTCTGATAAAGAGAGTGGACTGCTGCCTGCAGACAAGTGTTCTAACTCTAGAAAGGTTATAAGGGCTCTCAAACGCTTTGTGTGAGAAGTCACTTCAGAGCCATAACTGAGGATTTGGACTAAAGGTTCAGTTCATAATAAACTGCTCAATGTACAATATAGCCAACATCTGACATGTAGCCAATATGGACACATTAGTTTGGAAAACTAACAGAGATGTTTATCaatgtttgtttgattttgatgTTGGTATAAGTGTTGCTGTTGGAATTAGGTTTTAGGCCATGATGTAATCTTTACacagcgcttttttttttttttttccttcaggaaAATGAATATGAGAAGCAACGGC

Function

GO: NA

KEGG:

id description
K11674 MCRS1, INO80Q; microspherule protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363193 lncRNA upstream 121881 12295369 ~ 12295729 (+) True G306470
TU363175 lncRNA upstream 127853 12284951 ~ 12289757 (+) True G306452
TU363151 lncRNA upstream 263060 12154295 ~ 12154550 (+) True G306433
TU363147 lncRNA upstream 265441 12143548 ~ 12152169 (+) True G306432
TU362985 lncRNA upstream 475317 11942035 ~ 11942293 (+) True G306300
TU363205 lncRNA downstream 10166 12437199 ~ 12448374 (+) True G306479
TU363232 lncRNA downstream 145389 12572422 ~ 12573759 (+) True G306503
TU363513 lncRNA downstream 370715 12797748 ~ 12797982 (+) True G306744
TU363525 lncRNA downstream 477175 12904208 ~ 12904841 (+) True G306756
TU363733 lncRNA downstream 769442 13196475 ~ 13283007 (+) True G306938
XM_026932640.2 mRNA upstream 4515 12265705 ~ 12413095 (+) True ephb2b
XM_034314296.1 mRNA upstream 4515 12265705 ~ 12413095 (+) False ephb2b
XM_034314297.1 mRNA upstream 28867 12265705 ~ 12388743 (+) False ephb2b
XM_026932486.2 mRNA upstream 232466 12177090 ~ 12185144 (+) True nmur3
XM_026932911.2 mRNA upstream 320854 12067624 ~ 12096756 (+) True alpl
XM_026932875.2 mRNA downstream 7476 12434509 ~ 12454321 (+) True suox
XM_026932874.2 mRNA downstream 7479 12434512 ~ 12454321 (+) False suox
XM_026932892.2 mRNA downstream 47023 12474056 ~ 12485975 (+) True prph
XM_034314397.1 mRNA downstream 69276 12496309 ~ 12527278 (+) True timeless
XM_026932900.2 mRNA downstream 69276 12496309 ~ 12527278 (+) False timeless
TU362774 other upstream 901797 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 936510 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1091250 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1102174 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 1196095 11215015 ~ 11221515 (+) False dynlrb1
TU363207 other downstream 30568 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 1943755 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 2087577 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 4062328 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 4062328 16489361 ~ 16494139 (+) False amigo3

Expression Profile