RNA id: XM_026933004.2


Basic Information

Item Value
RNA id XM_026933004.2
length 4625
RNA type mRNA
GC content 0.40
exon number 12
gene id si:dkey-264d12.1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19815906 ~ 19834429 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgttattacactcCTGTCCGTTGCTTTTGGTAAGAACTTGCAGAAACAAAAGCTCAAGTCTCAGCTGAAACATTTCTTGTCTGCCTTTTGCATCAGGAGTGTGTGAATATTACTTGtttatcaggtgtgtgtgagttgtttggcggtgtgtgtgtgagtgtgtggtgtgttttactgtatttctgagaggatttgtACTAAAGCAGAGCCTGGGAGCGACAGAAGAGTCTGGAGAAGATTGTACTGCATACTGTTTTCCTAATGTGGTGCACCATGGAGGTGTGACTGATCCTGAAAGCTGCCATGACCCAGATTGGGATTGACAAATCTCACCTGCCGCACATCTACGACGtgtgtcagtgtttctCGATGCTGGAAGACGGAGCTCTGGCTCACAGCCTTCAGGAGCAGGAGATCGAGCAGTTCTACAGCTCCAACGTGCAGAAGAACCAGGCGGTGCAGAATGACGTGCGCTTGGCTCGCAGGATgcaggacgaggaggaggagagggtcCGTCTCACACACCAGCTCCAGCAGCTGGAGGAGCAGGACTGCGAGTACGCGAGGGTGATTCAGGAAGAGCTGCGGCGATGCGACCAAGAAGCtcagaggagggaggaggaggatgagGAGATGGCCAAGCGGctgcaggaggaggaagaatCGAAGATTAGACAGGAGAGAGCCGAGGCTGGTTACCACCAGGACAGAGGAGACTCGCTGCTCAGCCACGGGTTAGGGCTCTGGGAGCAGATAATGCGGGATGCTGAACTGGCTCGTAGtctgcaggaggaggaggacaaaCAGCCTCACAGGAGGAGCACTGAAACTGACGTGGACTTCCGTACGGTACAAGTGGCCCAAGATGAGGAACTCGCTCGCTACATGCAGCGACAGGAGAAGAAGAGCAACAGGAGGTCACGTGACCTGCTGGCTCTGGAGAGGTCACATGATCCAAGAATCACAGGCAGAAAAgTGCCGAGAGAGAGACTAAACTCCGAGGGCCTGCACTCACCTGTGGAAGAGGAACCATCCCTGGATCAGCACCCACTAATCCCCACATGCACTACTCTacacacacaccccttccaCAACATCGCAGAAGAACTGGACCCGACGTTCACCGGCAGGAAACGGGAAAGCCGGACCTCGACCGGCCCATCGCCagGGATCTGCCTGGCTCCTCGCACGCCTCACAGTGTTTTCTACGACTACCTTCCAGAACCTTCCCTCATCCCGCCGAGCAGACGCCACGCCGACAAATCGGGACGccacaaacacaaagagaaacGGGAAAGCTGTAAGCAGCAGTAGAgggatgggtgtgtctttagtTGTGCTCTGCctgataaataaggaataaaacacagcggggtggtgcgatgaagctgagttactgttaccaccacaacagttgattattttcacaacagcacaccctgaagtgttttattcctctacaccacagcagtttgccaacgattacaagtTTTCATTAACTGAATAATGATCTGTCGtacattttgtccatttataattacatttaatgttgggattttagttcctgttctcgcttacgttatagcagctataaacagtctttccctcaccagcctcttgaagttaataagtcagAAATAACgcggcttgtcatgttatctCAAAGCTGTTTTCAGACACTTGcttgtgtctgaaaacttaggtttacctctgactgttacaaagcactgacactggagactccttccatttgTAGTGCATTTATGTTGAGTGTCCACCCCTGTGAATAGTCCCTgtaaaagctgctgttatacaaaattactcaacacctcctgaccaatcagagacgaGAATTCAACACAGCGTTGTGGTACAAAACACTATAATAGAAACCTAATAAAATTATTGTACATTAGAGTTcaaaagtctgagtccactGCCAAGAGCACTgtcattatacactatacagctaaaagcatgtggacacctgggtgttgaacatcccgttccaaAAGcacaggcactgatgttgagttGTTCCCCCTTCGCTGTTGTAATaacatccactcttctggggTTGGCTTTCCATCTTTAGTCAAACAGCATCAGTCTTCAGTAATAGAAATCCAAGCAAAAAGTATTATTTAGTGAAGACGTGTGGTGATGATGCACACATGACCACGAATAGATTCGATTATTAAGAAATGACAAGGAAGACTGTTTTGGGAGCATAATAATGTtgtcattataaaaatataatgtactatatatttaaaatgtcaatCAGCATGCTTTATAGTGGAACCAGGAATTAGAgattctgaaaagaaaagaaaaaaaaaaaaaaaaagggaaaaaaaactgtctaaaaaattaaagtaggtaataataacaatgcaacaattaaaaacattgagcgagtgaaataaaaatgtgttccaGATCTttgcataaaaatgaatatagttTTATAGAGAGAGTTCAGCATCATTTGGAGCATTCACATACATAACAAGGtgctaaattattaaaatatgtaatttaacaaaaaaaaaaaaagtaaattcaaAAGAAACCATGCAGCCAGTGCAGTGGCGTAATAAGAGCTCTTTTCCTGGTGTGTATCaagcatttttaaataagtagtCCTTTTCTTGCATTTCGAGGGttttaatcagtgattattattccataaattataacaaaaaaaaacaaaaaacaatggtTTTAGTAATATTTCTAGTTTTAGTAATAAGTCAAGGTGCAATTTAAAAGTtaaatcagaatccagaattattAGTTTGTCTGTAGAGGCAGATTTCCACAGTTTATCATGCCCTTTTTCCATTTAGTTTCACTATCAATTACAGagaatttctgtttattatttgtttttaaaagtaattcatGCAGCAGTACTGGATATACAGGTTAGCACTTTGTTTTGGACACTGAGATAATCTGGTGTATCAGTAGCATTGCTGTGAACCTTGATGAATAACCAGAACTCGTGTTAGCATAtacacaaaaaattaaaaattggaCAGAGTACCGAGCCTTGCGGTACACCATAGAGCGGAGGTATTCAAACTGTGGGGAAGGAATTGCAACCGGGGAACAGGGGAGATGGAAAATACCGAaaagtacatatttaaatttcatacctttttttttttttcaaaccgtTTCATACCTGGCAACCTTTACATATTTTGCATAGGagcttcacattttaaaatcaaacttcaaaaatatgccaaaagagcaggcttacttttttccattaaaaaaacgTCAGATGAGTCACTCGACACACTCGACACGAGTCCTGAATGCTCTGCACTTGAAAAACGTGTTGATGTGATACGGcgctctcgctttctgtcacagcagatggagatttattttttttagtcaattcatgtgaaataaaagtCTTTCAGTGCGTGTCCGAATTAACTAGcgttaaataattacataacatCTGTTAACTATACTATGTTTTAGGGATACCACAGAAATATTGATTACGGTCGAAAGTAATCAAAAACGGCACGTTTGGTTTCGgctgaaataaaagtaaaaagtctGAAAATTTTGACTAGAAAAAAGCCATTGAATAGGCCTACGATGACATTTCAAGTCTAACACTTTACTAATAATGTTGATGGTACTTTAACAGGACTGTGATTTTAAACGCTGTTTGTTTCCTTTGCTCCTGTGCGACCGTCAGAAGCCATTCAGGGTCTCGGGAGGGACATGAGACCGTTAGACAAGTGATTTGTAAAACGATCGTATCAAAAATGTATTGTGTTATATCTTTACTGTTCCCTGCGTTTACTACTCTCTTCTGCTGTATTATAAGactgtggttttgttttatttcattttattttccagttaatAATAGGCAATAAtttgacaagttttttttttttttggccctgGCAGAGTTGAGGGGAGGCGCGAGTTCTCAAAAAACTGGGAAGTGGGGCTCATGGGGAAAAAGATTGAATACGTCTGCCATAGAGAATATCATATTCATCTGAAGACCATTTAAATGACAGTAGTATTTATGACAACCTTTTGGTTAAACTGGGACAATTTTGAGTAAAGTAAaggttttatattgtttttgatATTGGCTGAAATATCTttgactacatttaaaaaaaaaaggaaaaaaaagcttgtttggACTCAGATTTTTGAGGCCTATAGTACATAAAcgaataacaaaaacaaataaataataataaatataataataataaataataacaaaaaaaacaaaaaatgaattgaaaagcACATTAGATTCATGCACAATcagtaaaatctgttttataaaTCAGAGACTACTGATATTGCAGTATACAGTGTGtctttgggattttttttttttttttttgtaaggataCTCAGCTAATGCCTTGGTATATTTTGTGCACTCatccaatttttattttattttttgattatcTTAACAAACTTGCACTGTACACTAAGTACTTACAGATTACATTTCACTCTTAGCTATGTAATAGTTGTAACGAAGCTCTGAATAAAGCTCTGTTGTTTTAAACGACAGTAATGTGTACACACCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368221 lncRNA upstream 4171 19811438 ~ 19811735 (+) True G310882
TU368205 lncRNA upstream 98577 19717081 ~ 19717329 (+) True G310870
TU368163 lncRNA upstream 254516 19561183 ~ 19561390 (+) True G310828
TU368130 lncRNA upstream 317235 19494850 ~ 19498671 (+) False svbp
TU368131 lncRNA upstream 317235 19494850 ~ 19498671 (+) True svbp
TU368219 lncRNA downstream 1250 19835679 ~ 19836564 (+) True G310880
XR_004580176.1 lncRNA downstream 4992 19839421 ~ 19848284 (+) True LOC117599874
XR_004580177.1 lncRNA downstream 4992 19839421 ~ 19845547 (+) False LOC117599874
TU368220 lncRNA downstream 14038 19848467 ~ 19855283 (+) False si:dkey-264d12.5
TU368245 lncRNA downstream 65449 19899878 ~ 19905766 (+) True G310905
XM_034314141.1 mRNA upstream 6585 19787822 ~ 19809321 (+) True per3
XM_034314140.1 mRNA upstream 6585 19787822 ~ 19809321 (+) False per3
XM_034314142.1 mRNA upstream 8694 19787821 ~ 19807212 (+) False per3
XM_026932940.2 mRNA upstream 31981 19768983 ~ 19783925 (+) True vamp3
XM_034314138.1 mRNA upstream 53654 19535418 ~ 19762252 (+) False LOC113538092
XM_026932462.2 mRNA downstream 19019 19853448 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932461.2 mRNA downstream 22635 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932463.2 mRNA downstream 22635 19857064 ~ 19868481 (+) False si:dkey-264d12.5
XM_034313999.1 mRNA downstream 49397 19883826 ~ 19894420 (+) True si:ch211-193i15.1
XM_026932696.2 mRNA downstream 169976 20004405 ~ 20022989 (+) True mmel1
TU368156 other upstream 31993 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 31993 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 298747 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 728100 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1123892 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 1036223 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile