RNA id: XM_026935169.2


Basic Information

Item Value
RNA id XM_026935169.2
length 1434
RNA type mRNA
GC content 0.53
exon number 8
gene id psmd6
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4037772 ~ 4042092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGTTGACTTGCGGCTCGCCGGAAGTGCACTTCATACATCTCTTCTGTTGTTTAGATTTCTTCATAGTCATCGTTGCTTGTCAGTGTCAGCTCCAGACCTGATCGTTTCTCTCCCATCCGCTGAACAAACCCCACATTCGCCACAATGCCGCTGGAAAACCTGGAAGAAGAAGGATTACCCAAAAACCCCGACCTGAGGATCGCGCAGCTGAAGTTTCTGCTGACTCTCGATGGCCACAGACAGGACGCTGAGGTGAAGACCGAGCTCATGGAGGCGATCCGGGCGAACAACATGGCTCCTTACTACGAGAGCTTGTGTAAAGAACTGAAGTGGTCAGTGGACTCGGACCTACTGAGCAAAATGAAGAAGGCCAATGAGGACGAGCTGAAGCGCCTGGATGAGGTTCTGGAGGACGCGGAGAAGAACCTCGGCGAGAGCGAGATCCGGGATGCCATGATGGCCAAAGCGGAGTATCTGATCAGGATCGGAGACAAGGAAGGAGCTCTGACTGCCTTTAGGAAAACGTATGACAAAACCGTAGCCCTGGGCCACCGGTTAGACATCGTCTTCTACCTGCTGAGGATCGGGCTGTTTTACATGGACAGCGACCTCATCACGCGCAACACAGAGAAAGCCAAGAGTCTGATCGAAGAGGGCGGAGACTGGGACAGGAGGAACCGTCTGAAGGTGTATCAGGGCCTGTACTGCGTCGCCATCAGAGACTTCAAGCAGGCCGCCGAGCTTTTCCTCGACACCGTGTCCACCTTCACCTCATACGAGCTCATGGACTACAAGACGTTCGTCACGTACACCGTCTACGTGTGCATGATAGCGCTGAAGAGGCCGGACCTGAGGGAGAAGGTGATTAAAGGTGCAGAGATTCTGGAGGTGCTGCACAGTCTGCCTGGAGTGCGTCAGTACCTGTTCTCCCTCTACGAGTGCCGGTACTCCATCTTCTTCCAGTCTCTGGCTCGTGTGGAACAGGAAATGAAGAGGGACTGGCTCTTCGCGCCTCACTACCGTTACTACGTGCGTGAGATGCGGATTTTGGCCTACAGCCAGCTCCTGGAGTCGTACCGCTCCCTCACGCTGGGCTACATGGCCGAGGCCTTCGGAGTCAGCACGGAGTTCATCGACCAGGAGCTCTCACGGTTTATCGCCGCTGGCCGTTTACACTGCAAGATCGACAAAGTGAACGAGATCGTCGAGACCAACAGGCCTGACAGTAAGAACTGGCAGTATCAGGAAACCATAAAGAAAGGTGACCTCCTGCTGAACAGAGTGCAGAAGCTTTCTCGTGTCATCAACATGTAGCATGTTTACGCATCAGGAGACTTGTCTTTAGGCATTTGATGGCTGTTCTGACAATTCGGttgtcttgacttgacttttgTTTTATGTACAGTATCTAATAAAACCTTTTCAGAGAAAA

Function

GO:

id name namespace
GO:0070306 lens fiber cell differentiation biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K03037 PSMD6, RPN7; 26S proteasome regulatory subunit N7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU357867 lncRNA upstream 8502 4029009 ~ 4029270 (+) True G301852
TU357820 lncRNA upstream 104422 3933107 ~ 3933350 (+) True G301805
TU357807 lncRNA upstream 119241 3918330 ~ 3918531 (+) True G301792
TU357636 lncRNA upstream 125489 3910640 ~ 3912283 (+) False LOC113539463
TU357469 lncRNA upstream 507413 3521792 ~ 3530359 (+) True G301506
TU357872 lncRNA downstream 998 4043090 ~ 4043866 (+) True G301857
TU357901 lncRNA downstream 90188 4132280 ~ 4210261 (+) True G301881
TU357911 lncRNA downstream 96690 4138782 ~ 4168646 (+) True G301885
XR_004580239.1 lncRNA downstream 108450 4150542 ~ 4156726 (+) True LOC117599910
TU357907 lncRNA downstream 230004 4272096 ~ 4278649 (+) False cadpsa
XM_026935716.2 mRNA upstream 26004 3915586 ~ 4011768 (+) False prickle2b
XM_034314440.1 mRNA upstream 26004 3957559 ~ 4011768 (+) False prickle2b
XM_026935719.2 mRNA upstream 26004 3964667 ~ 4011768 (+) True prickle2b
XM_026935718.2 mRNA upstream 26004 3964667 ~ 4011768 (+) False prickle2b
XM_026935717.2 mRNA upstream 26004 3988801 ~ 4011768 (+) False prickle2b
XM_034314052.1 mRNA downstream 38344 4080436 ~ 4085015 (+) True thoc7
XM_026935742.2 mRNA downstream 116140 4158232 ~ 4278673 (+) True cadpsa
XM_026935677.2 mRNA downstream 247480 4289572 ~ 4292368 (+) True fezf2
XM_034314381.1 mRNA downstream 247666 4289758 ~ 4292368 (+) False fezf2
XM_034314204.1 mRNA downstream 292073 4334165 ~ 4380659 (+) True fgd5a
TU355411 other upstream 2539285 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 2540145 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 3172884 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 3192961 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 3516885 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 424985 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 2621982 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 4459546 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 4459546 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 6470579 10512671 ~ 10513270 (+) True G305515

Expression Profile