RNA id: XM_026935171.2


Basic Information

Item Value
RNA id XM_026935171.2
length 3451
RNA type mRNA
GC content 0.44
exon number 12
gene id mapk14b
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6506231 ~ 6533447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGCGCAGCAAGTTGGCAGGCGGATCAGCGCGAGCGCGAGAGTGAGTGTGAGCGCGCGACCACAAACTGCACCTGCAGCACCGATCCATGCACTGATATTGATTTTTggagcttttgttgttgttggttttgatTCCTCGGTTCAGGAAGCGAAAAGCATCGGAGAGGGGAGGGGGAGCAGAAGTTTTTCAGCCGGACTGAGCTCGCGTTGTTGGGAGAGGAAGGGGGGCCGAGGATCGGCAGGAATGTCCCAGAAGGAGAGACCCGCTTTCTACCGACAGGAGCTTAATAAAACCATATGGGAGGTACCTGAGAGGTACAAGAACCTCGCTCCGGTCGGTTCGGGCGCTTATGGATCTGTATGCTCGGCGTATGACGTAAAGACGGGCCTGAAGGTTGCTGTGAAGAAGCTGTCACGACCTTTCCAGTCCATCATCCACGCCAAGCGCACCTACCGAGAACTGCGGCTGCTCAAGCACATGAAACACGAGAATGTGATTGGCCTGTTGGATGTGTTCACGCCCGCCACCACCCTCGAGGAATTTACCGATGTGTACCTCGTGACTCACCTAATGGGCGCTGACCTCAACAACATCGTCAAATGCCAGAAGCTAACAGATGACCATGTGCAGTTCCTCATCTATCAGATTTTGCGTGGCCTAAAGTACATTCATTCAGCAGACATCATCCACAGAGACCTGAAGCCCAGTAACCTGGCTGTAAATGAAGACTGTGAGCTTAAGATCCTGGACTTTGGCCTTGCAAGACATACAGACGATGAGATGACGGGCTATGTGGCTACACGATGGTATCGTGCACCTGAGATCATGCTCAACTGGATGCACTACAACATGACAGTGGACATCTGGTCTGTGGGCTGCATCATGGCCGAGCTTCTCACTGGACGGACTCTGTTTCCTGGCACTGATCATATTGATCAGTTGAAGCTTATCATGCTGCTCGTCGGAACCCCAGGGCCCGAGCTCTTGATGAAAATATCTTCGGAGTCTGCCAGAAACTACATAAATTCTTTGCCGCACATGCCAAAGAGGAACTTCGCGGATGTATTCATTGGTGCCAACCCATTAGCCGTGGACCTGCTGGAGAAGATGCTGGTTTTGGACACGGATACGCGGATCACGGCCTCAGAGGCGCTGGCCCACCCGTACTTCGCGCAGTACCACGACCCGGAAGATGAGCCTGAGGCCGAGCCTTACGACCAGAGCTTCGAGAGCCGAGAGCTGGACATTGAGGAGTGGAAAAGACTGACGTATGAAGAAGTCCTGAGCTTTGAGCCGCCCGTGTTTGACGGAGATGAGATGGAGTCATGAGTCTGTCTTTCCTCGCCTCCAGGAGCGACAGAAGCTGCCTCATAACCacctttaaacagaaaaaaaaacacacacacaaacacacagcgtGACATTAAAGGAACAGTCTGACCAAAAACTGTTAATGCTCATCAAGAATGGAAGCTGTAGCCTTGAATTAGCGTCATGCAAATAGAACTGTGCTAATTGGGGGCCGTTGGGTTCCATTAGTGGTTTAAGGACGGACATTAGCATAGTTTGGTTACATTGCTCCTTTAAAGTGCCTGTGCCATCATTCAGTACTGGCTTCCCAATTATCAGAGACTATTTATAAGTGGAGGAAAACGAAAACACATACAGACGCCTCCACTATGGACACTGAGAATGTAGAGTATTACtgagtaatatttttttctctattgcTGTTATTGGATCTGTTTTCTTTCTATCCGTTTTTActttgaaatgtcattttaaaatgatagtAGAATTTTCAtgagatattattatttaaatttgaggATGGGGGGGGGTTGGGGGGAATAGCAATCATATCTGTCTTCTACTATCACACTTTTTGGCATGTAGTTTATTCTCAAAAGTACGGTCCCTGCTTTCAGCCGGTACAGTAACAATGGCCGTGAGGCGTTCTTAAATGAGTCACGTTAGTGTTTTTAgagctgtaaataaaacattgcgcttgtaaataaataagattgtGCAGGAGCGTTAGTTTTACGGAGTTCCATCCTCTGTTGTTTATGCAGAGAAGGAATCAGGAGTGGAATCAATCAGTGAATGTAAAATAGACCATGTGTTGTGCAGGATGAGCTCATGTCTGTGTATCAACGCTCTCCCTTTATCTCTTAACCTCAAAGTTTATCCAGCATCTCTTAACCTTTATCCAGCATAGGAATCCCCGGGGACTCCAGGTGATCTACGTTTTTGTTCCTTACCAGCTCCAGGCACAACAGTACCATGTGTTTAGTGCTCTTGATTTAGGTTGATTTATGATTTAGGCATGTTCTGAGCTGGAAGGGAGCAAAAATGAGGAGTGTTTAGGGTTTTTGGGAAACACCGTGCAACTGCCATATTTTTTGTTCTTCCAAATTGTAGAAAATATATCTTAAGTAGTGCTTGATAAGCAAAAGAATGTCTGACTTCCTTCTTATACGCGGCCTGTGGGTTGATCGTGGGATTTtgctatttataaatatgaaaattcaCCAGAAATTTGAGACGCATCATGTATTTGTTTCTCGCGCCATCTTTAGATGAAATGTACACCTGACCGCCTGTCTTACAGCCTGGCCCTTTGGCCTCTTTTTTGTGCtgtatgttattatttacatcattttttcaAACAGAGCACTGTTCAGTCAGTCGAATGGGTAAATTACACTGTGTCGAGTGTTAAGGGAGTCGTAGTGGCTTGCTCCAGTATGATTGGATCTCTGAGTGTCCTGTAATGTCATAATCCTCCTTCAGGATGCCTTTTTCTCACAGCCTGATGATTCTCATTTGCTGGTATTTTGAGCAGGTCTCGGTGCTGCTTCAGACCATGTCAATCTGAGCCAAAATCTGAGTGTGATCCCATTTTAGCACAGAAGACCAACTCCAAGAATGTGGGTACATCTCAAACCCCTTACTCTAATAAAATAGGATAAGACACACATACCTGCATACATGCAAGTGGCATACAATTTTGATATTCCAGTTAATGAGGTTTGggacacagatttttttttttttttttttttttgaacacagTAAACCGTGCCAGCATCTAACTTATTATATTAGTAATATTTGTTAAGATTATTTCGAGTGTGTTTTCCATGGtgtatattattaatttcattctGCAATATTCTGTTTTGAGCATGATTAGCAATGCGTGAGGGAATGTAAGgctgtttttgtatgtttacaataattcattaaaaaaaatcacaaaagtgGTCAGTCATACACCAGGTTATCCATAATTGTGTTGTTTTCATGTGGTCTTTTTGTAATACAAAAGGAAAGACACTCAAGTCCTTTTGTACCACTTGGCTAATTCATCAGTGCAAGCAGCTGACAACCTGTAAACCACTGGTAGTACAATAAAggcaattattatttttcaacacTGTGA

Function

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04441 P38; p38 MAP kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU359549 lncRNA upstream 3686 6498084 ~ 6502636 (+) True tmem167b
TU359550 lncRNA upstream 3998 6498084 ~ 6502324 (+) False tmem167b
TU359315 lncRNA upstream 155226 6350192 ~ 6351096 (+) True G303181
TU359310 lncRNA upstream 212573 6200446 ~ 6293749 (+) True LOC113539422
TU359311 lncRNA upstream 212573 6200446 ~ 6293749 (+) False LOC113539422
TU359641 lncRNA downstream 102410 6635857 ~ 6659338 (+) True G303404
TU359680 lncRNA downstream 257871 6791318 ~ 6793226 (+) True G303437
TU359917 lncRNA downstream 334271 6867718 ~ 6870772 (+) True G303645
TU359932 lncRNA downstream 365043 6898490 ~ 6900530 (+) True G303658
TU360012 lncRNA downstream 461398 6994845 ~ 7001112 (+) True LOC113539683
XM_026935172.2 mRNA upstream 3990 6498060 ~ 6502332 (+) False tmem167b
XM_026935219.2 mRNA upstream 16415 6487308 ~ 6489907 (+) True b3galt6
XM_026935394.2 mRNA upstream 20162 6472900 ~ 6486160 (+) True si:ch211-160o17.4
XM_026935395.2 mRNA upstream 20162 6472901 ~ 6486160 (+) False si:ch211-160o17.4
XM_026935234.2 mRNA upstream 36534 6465317 ~ 6469788 (+) True LOC113539488
XM_026935595.2 mRNA downstream 3146 6536593 ~ 6570973 (+) True srpk1b
XM_026935596.2 mRNA downstream 4265 6537712 ~ 6570973 (+) False srpk1b
XM_026935594.2 mRNA downstream 13840 6547287 ~ 6570973 (+) False srpk1b
XM_034314367.1 mRNA downstream 17868 6551315 ~ 6570973 (+) False srpk1b
XM_034314368.1 mRNA downstream 17868 6551315 ~ 6570973 (+) False srpk1b
TU358141 other upstream 2037148 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 5007835 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 5008695 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 5641434 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 5661511 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 130627 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 1968191 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 1968191 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 3979224 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 4230827 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile