RNA id: XM_026935208.2


Basic Information

Item Value
RNA id XM_026935208.2
length 3885
RNA type mRNA
GC content 0.43
exon number 13
gene id camk1b
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4695159 ~ 4740849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCTACAGGAAATTGTCGAGCCAGGCTTCTTCGTCACCAAGCAACGTGGCCACGTGACCACTATAGCTCACAGGCTCAATCCATTAATAAGCCACGCCCCCGTGCGCGCCCCCTCTCCCCTTTTTACATCGAACGCTGTGACGTCAGCGGTGCGCTGCTTTTGGAGGGCTTGTGAGAGGAAGCGGAGCAGCACTGCACACATAGCGGGCCGAGCGCGCGCACGAACGTCAGCTCAACTCATCTCATCTCCGGCGTTCAGCTACACGATATTTGATCGTAACAAGATGCCCCTGGGTGAAGATGGACACTCGTGGAAGAAAAAGACATCTGACATCAAGGAGATCTACGACTTCAAGGAGGTTTTGGGGACtggTGCGTTCTCCGAGGTTGTCCTAGCCGAGGAAAAGCGAACGAGGAGGTTGGTGGCGATAAAGTGTATTCCAAAGAAAGCACTGGAAGGGAAAGAGAACAGCATTGAGAATGAAATCGCCGTTCTTCACAAGATTAAACATGCCAACATTGTTTCTCTGGAGGACATCTATGAGAACAAATCGCATCTCTACCTCGTCATGCAGCTGGTGTCTGGCGGCGAGCTCTTTGACAGGATTGTGGAAAAAGGGTTTTACACGGAGAAAGACGCAAGCAAACTCATCCAGCAGATCCTAGACGCCGTGAAGTATCTGCACGACATGGGCATAGTGCACCGGGACCTGAAGccAGAGAACCTGCTATATTACAGCATGGACGAGGACTCGAAGATCATGATCAGTGATTTTGGCTTGTCAAAGATCGAGGGCTCGGGTAGCGTGATGAGCACGGCATGTGGAACTCCTGGATACGTAGCTCCGGAGGTTTTGGCCCAGAAGCCGTACAGTAAAGCAGTGGACTGCTGGTCCATCGGTGTCATCGCGTACATACTtTTGTGTGGCTATCCGCCATTTTACGACGAGAACGATGCCAAGCTGTTTGAACAGATCCTGAAGGCAGAATACGAGTTTGACTCGCCATACTGGGATGACATCTCTGATTCAGCTAAGGATTTCATCGTACATCTGATGGAGAGAGACCCGAATCTGCGCTACACGTGTGAACAAGCACTGCAGCATCCATGgattGCCGGTGATACGGCGCTGGACAAGAACATCCACGAGTCTGTGAGCGCTCAGATCAAGAAGAACTTCGCCAAGAGCAAATGGAAGcaAGCGTTTAATGCCACAGCGGTGGTCCGGCACATGCGTCGCCTCCAGCTGGGCACCAGTCAAGAGGGACAGAGTCAGCTTTCACCCCACAGCCCCTGCAGCGAGCGCCTCCTGCTGCCCGAGGGAactgaggaggaagaggacgagCAAAGCACCTCTCAGAGGGACAATAACGGCTGCTCCGAAAGTGCTGGCGAGGGGGCGGGGCACGACGGGATCCAGAACTGCACCTTCTGCGTCCACCCCACCAGCCGAGTCTGAGCCTGTTAATCATCCTGCTGCAACCAATGACTTGACTGTCCCGTGTTTCTACTGGAGTCCTGCCACACCCCCAGTCTGGCCAGGAATACTGAGTAACTCCAGCGCTTGGCCACTAGGTGGCACTGCAGTGTAAAGAATTCCAGGTGGGAAAGGGGGTCGCTATGCCAACAGAGGGATTCTGTTTACAGAGAGGTGAGCTATgagagaagaaggagagagagagagacgcatgCCGCAgctgcattatgggtaatggaCTGAGATTGGACAGTGTTTTATCTTCTGTTTCACAAACTACATGATGTTTCATCTTTCTGTCTTGGAAAAGTGGTTTTAGGTGTGTTTTTAGTTGTAAATTGGGTCCAAAAATATTTTGCCTCTGATCTTTTTagcctgcacactacacacagtttCATGTGcgatcagcacacacacacacacacacacacagacacacacgtttgtctaaTCATTGTGAttaccttccactgacataattattaatgcagctaattaatgctgtgctacacctaaatctaacctgAACGTCAgtctcagtaaccaaaagaaaGCCTTTACGTGCTTTTAGTTCTTAAAAAGCCAAATGTtcctacaaaaacaaaattgtcagatattcctatccttgtggggacatttggtatTTCAATAAAAACTATTTCTGGTGTTTCTATGAACCAAAGGTGAAGCTGAAATTCCCACTAGGTCATGAAAATACCTGGAAGCATATGGTATTAAAatacacatacccacacacacacacacacacattgtctgaTTAACATTATTTCAATCATTTGTACAGAATTATACTTGTACACATTTTGTCCATATTTGACTCTAATCAGTGGCGTTATATATTATTGTGCTACAGCAAACCAAGTCTGCGTCATTGTTTCCTgggacatttattttttcacagtCTTCAGTGCCTTCATGGTTGCAGTTGTTCAGGTTATTATTAATGCTTCATTTTTACATCTATTCATTGCCATTATGATCTGTCTGGATGCAGGATGCTTTAAATGTATAAACCATACTATTTAGGGCAAACACTGCAGctgtgccctgtgtgtgtgtttgtgtgtatgtgtgtgtggcgatTTTATACATCTAATGTCTATTACcattcatgtaaatgtttttatataaaggTGTTTCTTTTACTGGTGGTTTTACTCAGGGGATGATGGTGTGTTAAGGATTTGGGGTTTTAAATAAATGGTACAGGATTCATTATTTACAGATAAGTATAATATATtagtgtggtggcctgggaaaacctgtcgCTATGGctgaaaccataaatatatttcactaaaacggcatggaattttaaaaaaaaaaatttatttactttctaaccttgccttggttATCATCCTGCAAAGATCACGTTGGGTAAGGAGAAAACATTCAAAATCATTCAGTTTAGATAAGTGCCATTTCCTCACACACTTTGTGAAGGTTacactttgatcaagttgttggatagttCACATGTcatagtgaaatggacataatcCTAATTAATTCGGTTTGTAATCAGCTGTTAAAGTGTCCGTGATGCTCCCGCGCCACAGTCAGGACGCAATcttaaaatgtcatttcctGCTTTTACACTTTAGGGTAACCAGACCCTATAACTGCTATAACTTTACTTCTGATTGAGGTAGTGTTTTTACAGTGTGACGGTTTAACATTCACAGTTAGTCACGTTGTATGATAGGTCCATTGACCTTTTTCCAAAAGACTGATTAAAATGCAATTCCGTCTATTTACATTGACCCCCTAAATCATACCTCTGTTTCTCTGCACAGGGGACATGACTACACTGAAACCCTGTGGCTGGTATCAGGTTGCTAACTTTATCATACAAAATGTAGCCCTCTACATGCTACCTTTCCTCCCAGTCACTGtctctttcagcttataatTACAATGATAAGTACTGACAGTGAGACTTTATGGAAAAAGCATTCTTAAAAAATGTATAGACAAGGATGTCCAGTTAAATTGTATGActtttctgtggttttttttcttctttttcttaaagGTCCATATAATACTGTGTGTAATACATACTACTGTGAAACCAAGATATTAGATTATAATGAGATTAGAATTATAATGATATTAGATTATAATACCGTGAACATTTCAAACCGTAACACCCCAAATGAGAAACATATTACAATTCAGGACAGTTTTCAGagctatatatagtagaaaatatgaaaatttcaTCATGGGAAAGGTTGTCCCAGGCTGccataaacatatatatagacagagGAAATAATCTTTGCCCTTGACATGGGGGTCTGttgtaatatttctaatattggTATTACACCACTGAACCTATACAGAATGAAAGGCATTAAAAGAAATTTTGCTGTA

Function

GO: NA

KEGG:

id description
K08794 CAMK1; calcium/calmodulin-dependent protein kinase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU357951 lncRNA upstream 399643 4295308 ~ 4295516 (+) True G301923
TU357949 lncRNA upstream 400426 4294467 ~ 4294733 (+) True G301921
TU357907 lncRNA upstream 416510 4272096 ~ 4278649 (+) False cadpsa
TU357911 lncRNA upstream 526513 4138782 ~ 4168646 (+) True G301885
TU358451 lncRNA downstream 79843 4820692 ~ 4820899 (+) True G302360
XR_004580245.1 lncRNA downstream 96303 4837152 ~ 4878375 (+) True LOC117599916
TU358624 lncRNA downstream 434721 5175570 ~ 5217425 (+) True G302530
TU358652 lncRNA downstream 686358 5427207 ~ 5471492 (+) False ptprga
TU358674 lncRNA downstream 781685 5522534 ~ 5565014 (+) True G302575
XM_026935468.2 mRNA upstream 11608 4681030 ~ 4683551 (+) True spcs1
XM_026935455.2 mRNA upstream 21472 4666876 ~ 4673687 (+) True gnl3
XM_026935463.2 mRNA upstream 225963 4451040 ~ 4469196 (+) False LOC113539599
XM_026935462.2 mRNA upstream 225963 4467059 ~ 4469196 (+) False LOC113539599
XM_026935461.2 mRNA upstream 232960 4451040 ~ 4462199 (+) True LOC113539599
XM_026935407.2 mRNA downstream 469795 5210644 ~ 5471561 (+) True ptprga
XM_026935689.2 mRNA downstream 733041 5473890 ~ 5486512 (+) True cse1l
XM_026935774.2 mRNA downstream 766144 5506993 ~ 5510940 (+) True LOC113539749
XM_026935775.2 mRNA downstream 766144 5506993 ~ 5510940 (+) False LOC113539749
XM_034314405.1 mRNA downstream 773859 5514708 ~ 5517420 (+) True LOC113539468
TU358141 other upstream 225985 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 3196672 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 3197532 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 3830271 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 3850348 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 1923225 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 3760789 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 3760789 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 5771822 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 6023425 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile