RNA id: XM_026935213.2


Basic Information

Item Value
RNA id XM_026935213.2
length 4879
RNA type mRNA
GC content 0.38
exon number 7
gene id syt6b
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9228442 ~ 9237329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atggccgaCTTCCTGTTGGGTGGAGACTGCTCCTTCAGACTTCTACTGCTGATATTTGTGGTGTGTGGCCTAGCCCTGCTGGCTGTCATTGGCCTCACTAGCTGGAAGCTGTGCTGGGTGCCCTGGCGGAGCAAAGCCCTCCTGTCCACCCACCCAGAGAGGCTGCCACCCAGAAATAGTGACAGAGACCTTTACccagcacacacagacatcatgGCAGCGGATAAACCGAAGGGTCCTGGAAGCATCCTGAAGACAGCAGTGAAGATCAGTCACACATCACCGGACATTCCTGCAGATGTGCAGGTGTCCATGAAGGACCACTTGCTGAGATGCACTCGTATTGCACGGCAGACCACTGAACCAACCTCTTCTAACAGGCATAGTTCTTTCAAGAAGCACCTACCCAGACAGATGCACCACGTCACCAGTCTGGACCATGGGAGTGATTTGCTGGACATGGAAGATCACCCCACCTCCACAACAGCCTCACTTGGTCGTATCCAGCCTGAACTGTACAAACAGAGCGTGCAGGATTCTGATCAACTGTCCAAGAATGGTGCAGCCAAATCCTGTGGCAAGATCAACTTTTCACTCAAATATGATTATGAGGGTGAGCTTCTGCTTGTCACCATTGTCAAGGCAGAAAACCTGCCTGCCAAGGACTTATGTGGCAGCTCAGATCCCTATGTTAAAATCTACTTGCTGCCAGATCGCAAGCGCAAGTTCCAGACCCGTGTGCATCGCAAGACCCTCAACCCTACATTTGATGAGACCTTCCAATTCCCAGTTCCCTATGAGCAGGTGGCTGCAAGGAAACTGCACTTAAGTGTGTTTGACTTTGACCGCTTCTCACGACATGATATGATTGGCGAGGTATTACTCGATAACCTCTTTGAAGTGTCTGATCTTTCGAGGGAGACATCTATCTGGAGAGACATTCAGTATGCAGCTAGTGAGAGAGTTGATCTGGGGGAGATAATGTTCTCCCTTTGCTACCTGCCCACTGCAGGACGACTTACTCTTACGGTCATCAAGTGCAGGAACCTCAAAGCCATGGACATAACTGGTTACTCAGATCCATATGTGAAAATATCACTTATTTGTGATGGAAAGCgactgaaaaagaagaaaaccaCAACAAAGAAGAATACCTTGAATCCCACTTACAATGAAGCCATTACCTTCGACATTCCTCCAGAAAACATGGATCAAGTCAGCTTACATATATCTGTCATGGACTATGATTTAGTGGGACATAATGAGGTCATAGGTGTGAATCGTGTCGGTAGCTGTGCTGAGGGGCTGGGGAGAGACCACTGGAATGAGATGTTGGCTTACCCTCGTAAACCCATCGCTCACTGGCATCCACTCCTAGAGCCTAAGAAGTCCGCAAAAGAGTGGAAGACTCGCACTTCAAGCTTTGACAGCCAGGGGTCATGTCCATCTCCTCGACTTCCCTCCAGGTCATAGAAAAGAGGCCAGAAGCACAATTTGCTCTGTAAGTCTTCTTAAAATCTAGTGAACTACTAGGAGTCTGTGGAAAAGATTCACACAGGTCATGAGATGACCTGTGGCGTAATGTCTGTCTTACTGACATGGCTAACAGAATAGCCAGAAAGAAGATGGAATCAAAGTCTTTCATTAGGATTAgtgtgtttgattgtttttgctTTAGGAGTTATCACTTTCCCTGActggataaatttataaaatcagTCTACAGAGTTAAGTTAATAAATATGGATTTAACTGAACCAGAATAGGCAGTTACTAAATGCTTATTCacgtccataaatatttggatattgacaaatttattgttatttaactgTCTACCACAGCATATAGGTGTTGaacttaaataataaatatgacctcaaagtgcagacttttaCCTTTATTTTGAGGGTTTTACATCCAAAGAGGATTTGCaaacaattatattaaattgtcattttaaatacttggttgcaaatcctttgtagtcaatgacttCCTGAAACAACAGGCTCTGGTTTGCTTTTGATGTATGCTTTGGCTCATTGCCCATCTGCACTATGAAGCGACATGCAATGAGTTTTGAAGCTTTTGGATGAATCTGAGTAGATAATATagttctatacacttcagaattcatcctgctggtTTTggcagcagtcacatcatcaataaatacgaGAGagccagttccattggcagccatacacacAGCAGAAGATGAGGTGGAATGCTTCAGATTATGAGTAgttccttcctttctccatacttctcttcccatcattctcgtataagttgatctttgtctcatctgtccattgGCGGTTGTTGCAAAActgtacaggcttttttttagacatttttggcaaactcttcctgtttttgaggcttaccaatggtttacatcttgtagTAAACCCTATGAATTTACTCTGTTGAAaccttctcttgattgttgacacAGATACACCTATCTCCTGGAGGGTGTTTTTGAtttggccaactgttgtgaaggggtttcttttcaccagggaaagaattatTCTGTCATCCATgacagttgttttctgtggtcttccaggccttttggtgttcctgagctcaccagtgcattctttctttttaacaatgtaccaaatagttgatttggcctcaCCTAATGTTTTTTCCTATCTCTTTGAtaggtttgttttatttttcagtttaatgaTGGTTTGCTTCACtggtgacagctctttggacttcatattgagagttaacagcaatgGGTTCAAAGTGCAAGGGacacacttgaaatcaactctagaccttttatgcttactttaaattgaaaaaatgaGGGAACAATAtccacctggccatggaacaacTGAACAATTACTTTTTGTCCCTTAAAAAgggaaatatactgtatataaagtgatgtaattcctacaccgttcacctgatttgggtGTAAATACCCTCAATACTGgcaaaagcaattttttttaattacaaagtTTATCTTAATTATTTATGTTCTCTCTGATTAATGCCCTGATTAATTGTTATACAATGTCATATAAAGCTATAATCGACAAGATATTGATGTACATCCATAACCTTTTGGTCTGTTCAAATTTCAGTAGACTGAATATCTGCTAAATAGGTAAGATAACCTGGCAAAATAAAGGCAACTTTGATTCACTATATACACGTTTCAGACTCGCTGCTATGTATATTTAATGGATTATATTTATGACATTACAGCTATTTACTGATTAGTTGTCCAGTGTCCAAAACCTTCTAAGCTGCTGTGTGTCTAacacttgtttgttttgctgGTAGAGCCATATGTGAAAATATTGCTGATTTGTCATCAGAAAACTAGAATATATTTGCTTAGATTTGTTTGATCACATCCAGACCAGTTATCTGTTATTTTAGTTGAAATTGAAATTAGCTGAGAAAATTATAATTTCATCAGTGATTAATCACTCCTGTTTTGTCAGCAAAAAATATTCTGCTGGTTGCAGCAATTCCTGTTCAGATCTTTAGCTATAACTATAGGAAGTATaaccttgaaaaaaaatatagtaattgttatgtttttttgtcttgttacctataaattattcattctttaaataatgtatttcatTACAGTTGAGTGTGACAGTTTATACATTCTTTCTAAATTTAATGTGATTCTCATACATTCTCATAATTCATCATCGCAAATATTATAgttccatgtgggtttcctccgggttctccggttttctcccacctcccaaaaacatgccattaggtGGCCTGGCTGAGATAAATTGCCTGTAGTTGTAaatgactgtgtgaatgtgtatggactggtgtcctttccagggtgtatttccgtCTCACAACTAGTGTTCttgaaagtgaaagaaatagTATTTTAAGACTGTATATTATGTGtgtacattaacattttaaaacttaaacaatcaaaatgttatttctgcatgttttaaatgacttttattCCACCTGACTCTAAGGACTGTATAGGTCCCTTGCTGAttgttttggactttttttattaatcttgTTAATCTTAATGATTTGATAGTTTCTTTatgtttcttccatttctgaaCTGTGGTCTTTCTCATTGGTAAACAGTGTGATATTGTTTTATACTCTTCTCCCACTCTGTgaatctttgtttttctttaggTCTGAAGTCTTGTCATACAATTTTCTTGATCCCACTGCTCACAGTAAACTTTAAGCCTTATTATTAAGTCTTATTTAAGGAAAGATCAATTAAAgtgttttgattgttttagGTCATTGCACACTTTTAGGAGTGGCatacaaataaattaactaTAGTAGGTTAGTGAGGATGCTAATAAGCTAATTGAGGTTGTTGATAAAAATAACTACTGATTTAGACACAATTGCTGTAATATTTATGCCACTTTATAATGGGTTGTAAATAGGAAAACATTACAtgaacattacatttttctatTGCCCAGAACCCAGAGATGAAACTATTGCACTCATCTGTAGTTGCTATGGCTGGAACCCCTTGCTGTTGTACCTAGtgatacatgtttttaaatcaaaactatttttatttttcagatggCATCAAGTaacttttcacttttatattgagaatttgtatttgtaatgtaTAGATCGGAATTGTTTCAGAGCACTCCTTGTATTTCTTAAGTGTGATTAAATTTATTGATGCTAATTGGTCTTTTttcagcatttgtttttttagaaTGTAACCGTTTGTTCACTCGTGTACTTTAATTCCTTAACATGAATTCCTTAAAATGCCTGTTGTCCTATGTCTTACATAGCAATATGATTGAATAACAATGACTTTGTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580247.1 lncRNA upstream 207190 9019600 ~ 9021252 (+) True LOC113539427
XR_003403926.2 lncRNA upstream 207190 9019600 ~ 9021252 (+) False LOC113539427
XR_003403942.2 lncRNA upstream 211448 9004691 ~ 9016994 (+) True LOC113539633
XR_004580248.1 lncRNA upstream 211448 9005903 ~ 9016994 (+) False LOC113539633
TU361111 lncRNA upstream 288755 8939059 ~ 8939687 (+) True G304669
TU361352 lncRNA downstream 60040 9297369 ~ 9297578 (+) True G304898
XR_003403966.2 lncRNA downstream 74391 9311720 ~ 9312791 (+) True LOC113539732
TU361378 lncRNA downstream 123001 9360330 ~ 9365833 (+) True G304917
TU361385 lncRNA downstream 158246 9395575 ~ 9395926 (+) True G304924
TU361387 lncRNA downstream 166722 9404051 ~ 9404267 (+) True G304926
XM_034314443.1 mRNA upstream 302229 8918438 ~ 8926213 (+) False nfs1
XM_026935681.2 mRNA upstream 302229 8918439 ~ 8926213 (+) True nfs1
XM_034314444.1 mRNA upstream 302229 8919186 ~ 8926213 (+) False nfs1
XM_026935430.2 mRNA upstream 319911 8901674 ~ 8908531 (+) False rbm39a
XM_026935592.2 mRNA downstream 79069 9316398 ~ 9335379 (+) False inavab
XM_026935591.2 mRNA downstream 79069 9316398 ~ 9335379 (+) False inavab
XM_026935590.2 mRNA downstream 79070 9316399 ~ 9335379 (+) False inavab
XM_026935587.2 mRNA downstream 79071 9316400 ~ 9335379 (+) False inavab
XM_026935589.2 mRNA downstream 79071 9316400 ~ 9335379 (+) False inavab
XR_004580199.1 other upstream 669531 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 669654 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2449084 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4759268 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7729955 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1275342 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1526945 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1531378 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1531378 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 1874410 11111739 ~ 11112518 (+) True G305727

Expression Profile