RNA id: XM_026935219.2


Basic Information

Item Value
RNA id XM_026935219.2
length 2165
RNA type mRNA
GC content 0.48
exon number 2
gene id b3galt6
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6487308 ~ 6489907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAGGCTCCTGGTCATTCCACGCTTTCTGACGCCCGCTAGCTTCCTGCCTGCGTCATCACTAACCTGAAGCTAGCAGCCTCCTGTCAGAGTGCCGCTGTGCACAGTGTCTGAGGAGAAACAATGACGAGCTGAACGATTTTTGCGAAATATTTCTACATGCCTGGCCTTGTAGCTATTTCGTGACAATATTATTTATTGAGCTGGGCAACGAGGGAAAGAGGCTGGCGGCGTTATCATCCTGTTTAGCCTCACCAAGCTATGCTAGCTGTGTGACTTGGTAGATTGCTAGCCTCAAGCTAACAATGCGCGAGAGAAAATCATAAACGCGTCAGAAAGCGGTGCAGCGCCTAAATCCCGGCTGTAACACCATGAATTTTGTCCGGCTTGTGTGCCGCCACAAGACTGCCCTGGTGCTCGGTGCCCTCTGCCTCTTCGCCACcgtcctcctcttcctcgcCAAATGCACGTCGGAGACGTTGAAACCTCCTGACTCGCCTGGCTCCGCACCACGCGCCCAACCCCAACCCGAGCGTCCAGCTTCACCTTCTGACACCAAGGAGATCTCGGCTTTCCTGGTGGTCCTGATCACTACAGGTCCAAAATACACCGAGCGGCGCAGCATCATCCGCAGCACCTGGCTCTCCAAAACCGACCCTGATGTGCTTGCGTTGTTCGCGATCGGCACCGAGGGCTTACCGTCCGAGGACATGCGGAATCTAGAGACGGAGCAGACACGTCACGGAGACCTTCTCCTCCTTCCCGAACTCCGTGACTCCTATGAGAACCTGACGCTGAAGCTGATTCACGCCTACTCATGGCTCGATCAGAAACTGGACTTCAAGTTTGTCCTGAAGGCTGATGATGATACGTTCGCCCGTTTGGATCTGCTCAAGGAGGAGCTGAAGAGTAAGGACCCCAGACGCCTTTACTGGGGCTTTTTCTCTGGCCGAGGCCGCGTGAAAACGGCCGGGAAGTGGAAAGAGAGCGCCTGGGAGTTATGTGACTATTACATACCATACGCTTTAGGCGGCGGCTACGTGCTCTCCGCTGACCTAGTGCACTACGTGCACTTGAACTCTGCTTACCTGAAGACGTGGCAGAGCGAGGACGTCTCTCTGGGCGCCTGGCTCGCACCCGTCGACGTGAAACGGCTGCACGACCCGCGCTTCGATACTGAGTACAAGTCGAGGGGGTGCAGCAATAAGTACGTGGTCACGCACAAGCAGAGTCTGGAGGACATGCTCGAGAAGCACCAGACGCTGCAGAGAGATGGACGTCTGTGCAAAGAGGAGGTGAAGCTGCGTTTGTCGTATATTTATGACTGGAGTGTTCCACCATCGCAGTGCTGCCAGCGCAAAGACGGTATCCCTTGACTTCCctgatgatgtcacacacattcagttgttatttatttatttgtggtcCATGCTTGACCAGCCAGCAGCTTACGTGGACTTATTTCATAAGTTCACAGTCTAACAGTCATCCTCTGTACCtttgggagtttttttttttttaaatctgggtATGAATGTGGCAGAACTAGATGCTGACTGGATTTGCAGATATATTCACTAGGAGCAACACGAAATGGACAAAAAGCATTGTGGACCATAGTTAAAAATTgggttacatttatttaatattacttattatttatttggattGTGCCAATACCATGAGTAAGACATTCATGCAGAACTTAACTGGAAAAACAGAGGAGTCAGTATGCTCAGAAGCataaaactgaaaacagaaatgaatttgtatatttgcatatttcagcTGCTGTGTACCTTCATTCCCCCCCTCCAACTCTTTTCCTAAattaatggtgttttttttttttttaacagacaaAGTGAGTGCTGACTTCACTAATGTTATATCTATTTCAACTGGCTCTGTCCCTAAATACTGTAGTAGGCAGTATTGTGTACATTAGACGTTTTCTTTTTGCCTGTCAGATcgattttttatttcagttttgaaATAACCATTTACCATCAGTGGTTCATGTCGATGTGCTGCACTAATAACACTGTCAACTGTTACTACTGAGCCACAGATTATACCTCCATTATGTTATTTTAtcaaatgtttttgttacaCAGTGCATTTGatcatgttattttattataataaaattctaatGAAATTCCA

Function

GO: NA

KEGG:

id description
K00734 B3GALT6; galactosylxylosylprotein 3-beta-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU359315 lncRNA upstream 136212 6350192 ~ 6351096 (+) True G303181
TU359310 lncRNA upstream 193559 6200446 ~ 6293749 (+) True LOC113539422
TU359311 lncRNA upstream 193559 6200446 ~ 6293749 (+) False LOC113539422
TU358684 lncRNA upstream 906329 5577633 ~ 5580979 (+) True G302585
TU358685 lncRNA upstream 925784 5560613 ~ 5561524 (+) True G302586
TU359549 lncRNA downstream 8177 6498084 ~ 6502636 (+) True tmem167b
TU359550 lncRNA downstream 8177 6498084 ~ 6502324 (+) False tmem167b
TU359641 lncRNA downstream 145950 6635857 ~ 6659338 (+) True G303404
TU359680 lncRNA downstream 301411 6791318 ~ 6793226 (+) True G303437
TU359917 lncRNA downstream 377811 6867718 ~ 6870772 (+) True G303645
XM_026935394.2 mRNA upstream 1148 6472900 ~ 6486160 (+) True si:ch211-160o17.4
XM_026935395.2 mRNA upstream 1148 6472901 ~ 6486160 (+) False si:ch211-160o17.4
XM_026935234.2 mRNA upstream 17520 6465317 ~ 6469788 (+) True LOC113539488
XM_026935575.2 mRNA upstream 22442 6440755 ~ 6464866 (+) False acap3b
XM_026935571.2 mRNA upstream 22474 6406770 ~ 6464834 (+) False acap3b
XM_026935172.2 mRNA downstream 8153 6498060 ~ 6502332 (+) False tmem167b
XM_034314058.1 mRNA downstream 16324 6506231 ~ 6533447 (+) False mapk14b
XM_026935171.2 mRNA downstream 16415 6506322 ~ 6533447 (+) True mapk14b
XM_026935595.2 mRNA downstream 46686 6536593 ~ 6570973 (+) True srpk1b
XM_026935596.2 mRNA downstream 47805 6537712 ~ 6570973 (+) False srpk1b
TU358141 other upstream 2018134 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 4988821 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 4989681 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 5622420 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 5642497 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 174167 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 2011731 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 2011731 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 4022764 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 4274367 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile