RNA id: XM_026935224.2


Basic Information

Item Value
RNA id XM_026935224.2
length 2224
RNA type mRNA
GC content 0.44
exon number 5
gene id rem1
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8869019 ~ 8879676 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTGTCGCTATGACTCCTGGGCTATACCGTTACATCCCTCACAGCCTGCACGCAGCAGCTCCGCAAAACTCACCCAGACCCGGCCCTCTTTTACCGAAGGACAAGGAGAAGGCACAGTAGTTACAGGTAGTTCCAACCGCATAACTTCATCGTCAGGCTTCACATTTCTACCACGCAAGAGTAAATAAACGCATGGACCTGCCTGCattcagtagtttctgaaatgaCGCTGAACACGCAGAGAGAGGGTAGAGAGGTGGTGAGGAGAAGGGCCAGTACTCCCATCCCCTCCTCTCGGCATGGAGTAATACACAGAGAACCTCAGCATCCTCCACTCGCCCAGTCCGCCTCCTACCAGGCTGGAGACACGAAACTCCACCTGCGAACTCACTGGTCCTCCGACTCCGAGGAGTCCGACAGCTCAGGCTACGAGTGTCTCTACCGGGTCATCCTACTGGGTGATCACGGAGTCGGCAAGTCCAGCCTGGCCAGCATCTTTGCTGGAATACAAGAAAAAGATGCCCACAGCTGCATAGGCGAGGACATGTACGAAAGAACACTGACAGTGGATGGAGAAGAAACCACCCTCATAGTAATGGACACATGGGAAGCAGAAAAGCagGAAGAGGACGAGAAGTGGGTGCAGGACTACTGCATGCAGGTTGGGAATGCGTATGTCATAGTTTACTCCATCACTGACCGCAGCAGCTTTGAGAGTGCATCAGAGCTGCGCATCCAGCTGCGACGCATCCGTCAGGCCGAGAATATTCCCATCATTCTTGTGGGCAACAAGAGTGACCTGGTTCGCTGTCGAGAGGTAGCAGTGGAAGAGGGTCGGGCATGTGCTGTCGTTTTTGACTGCAAATTCATTGAGACATCAGCATCATTGAACCACAATGTGCAAGAGCTGTTTGAAGGCATCGTGAGGCAGATCCGTCTGCGACGGGACAGCAAAGAGACCAACGAGCACCGGCGCTCCATTTACAAGCGCAAGGAGAGCATCACCAAAAAGGCCCGCCGCTTCCTCGACAGACTGGTGGccaagaacaacaaaaaaatggccCTGAAAGTGCGCTCCAAATCCTGCCATGACCTGGCGGTGTTGTGAGCTCTTTTCTTAATTTCAGAAAGCTTTGAAAACCATCAGGCATCTGTTTTTATGAGGgaatttttgtcattatttattatttatttagcttcaGTTTTGAAGAGGGTGGATTTAATGGATGACACTTTTGAGAATCCTATTCAGCAAATAGATCAGAAAAAATTATGTTGGGATGAGGAGCCATAAAGCAATTGTATTGAATCACACAATTGTATCAGATATTAAGTAGACTTTGTCTTTGTCTGTGTTTGCCTTATTGGAATACATCTACagaccaaaaaaattaaagaaaaataaaaaataacaaagcatGTGAGCAAGGTGTTAGGACACCATGAGCAACCAGCACAGCTTCAGTGCATCTTTGCACTCAGTGTATCTTTGCAAGTTTCTGGAATTGTCCGGGagaatgaacaccattcttccaaaagatattccatCATTTAGTGTTTTAATGAGTGGATGagggcattgtcatcctgaaagagACCAAACCCATCAGGATATAAATAGTTTTCCTATAAGGGAACAAGTGGACCCAAAACCATACCATtcacacagaataaaaaaactacCATTCTTTCCCCTTTTAATTGAGCAACCATCTATAACTTAAGGTATATAGCTATAGTCatactatttaaaaaagtgatCAGTTGTCATTTAGATCATTTGTATAAATGATCAGTTATTATAGGAAAAGCACTGTATAAAAAGGTACTACAGGTGATAGTACAGGTGAAACCACAGTGTTTCATGGAAAGGTATGCACTATATACTCCATTTCACTGAACTGTACAAGCTGGCTGGAtcaaaaaatatgcaaaaaaggCTACCTAACTGAGGCTGTTAAAAGGGTAAGCATGTTGATCATCATCTATATATACTGTCAATATTTTATGCAAACCTGCCttttaaactctgtgtgtgtattttaggtGAAGATACTATGCAACTATCCTCAGTCTCAAATGGCTCTGCTTAGTTTGCAGATATGCATCAAAAGAAAGAGTCAAAAAGAGTTGTTTCACTCATTAGGTAAAAGGCAATGCTCTATATTTGTTCTTACAATTTTCTGTCTAGTTTTTTTGGaacctgattaaaaaacattttgt

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361012 lncRNA upstream 107416 8761931 ~ 8762253 (+) True G304600
TU361008 lncRNA upstream 108026 8756598 ~ 8761643 (+) True G304599
TU361011 lncRNA upstream 111119 8756598 ~ 8758550 (+) False G304599
TU360977 lncRNA upstream 151206 8718224 ~ 8718463 (+) True G304575
TU360968 lncRNA upstream 179960 8689493 ~ 8689709 (+) True G304566
TU361111 lncRNA downstream 59383 8939059 ~ 8939687 (+) True G304669
XR_003403942.2 lncRNA downstream 125015 9004691 ~ 9016994 (+) True LOC113539633
XR_004580248.1 lncRNA downstream 126227 9005903 ~ 9016994 (+) False LOC113539633
XR_004580247.1 lncRNA downstream 139924 9019600 ~ 9021252 (+) True LOC113539427
XR_003403926.2 lncRNA downstream 139924 9019600 ~ 9021252 (+) False LOC113539427
XM_026935665.2 mRNA upstream 49825 8813581 ~ 8819844 (+) True pnp4a
XM_026935365.2 mRNA upstream 169025 8693677 ~ 8700644 (+) True maf1a
XM_034314277.1 mRNA upstream 186197 8673186 ~ 8683472 (+) False zc3h11a
XM_026935431.2 mRNA downstream 21997 8901673 ~ 8908531 (+) False rbm39a
XM_026935430.2 mRNA downstream 21998 8901674 ~ 8908531 (+) False rbm39a
XM_026935432.2 mRNA downstream 21998 8901674 ~ 8908531 (+) True rbm39a
XM_026935429.2 mRNA downstream 21998 8901674 ~ 8908531 (+) False rbm39a
XM_026935434.2 mRNA downstream 21998 8901674 ~ 8908531 (+) False rbm39a
XR_004580199.1 other upstream 310758 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 310881 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2090311 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4400495 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7371182 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1632995 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1884598 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1889031 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1889031 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 2232063 11111739 ~ 11112518 (+) True G305727

Expression Profile