RNA id: XM_026935235.2


Basic Information

Item Value
RNA id XM_026935235.2
length 6397
RNA type mRNA
GC content 0.50
exon number 24
gene id ncoa3
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6160790 ~ 6198383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCGCGCTAGGCTTCTCTCTGCGCTCGGGGAGTGTTTcccatttaaacaaacacagctaGCGCGGAAGATGGCGGAGCGTTGATTAGTGGCTTAAAGGGAACTGGTGTGTTTGAAGTGGACACATATTAACCCGTGGTGGCCTTGCTGAAGCCGTAGATGCCCTCTGTGCCTGGGTCTTTTATCAGAGCTTCCACATTGTCACTCAGAGGATGTGAGGTGGAACGGAGTGGATGTCATCATTCTCCACTGCTGCAAAGgtgctgaTATGTGTTGAAGATGAGTGGACCCGGGGAAAACCCTCTGGAGCCATTGGGCTACGACCGGAAACGTAAACTTTCCACTTGTGACACACCAGGACTgggGTGTGATAAGCGACGGAGAGAACAGGAGTGTAAATACATCGAGGAGCTCGCTGAGCTGATCTCAGCTAACCTCAGCGACATCGATAACTTCAACGTCAAACCGGACAAATGCGCCATCCTTAAAGAGACAGTACGCCAGATACGGCAGATTAAAGAGCAAGGAAAGGGTTCATGTGGCGATGATGATGTCCAAAAGGCAGACGTGTCCTCTACGGGTCAGGGGGTCATCGACAAGGACCATCTTGGCCCTCTGCTGTTGCAGGCGTTGGATGGCTTCCTTTTTGTGGTGAACAGAGAGGGAAACATCGTGTTTGTGTCCGACAACGTGACTCAGTATCTGCAGTACAAGCAGGAGGAGCTGATCAACACCAGTGTCTATAACATCTTGCATCAGGAGGACCGTGAGGAGCTGCAGAAAAACCTGCCCAAAGCCACTGgaGGGAATGGTGTTTCATGGACTGGAGATGCCTCTCGTCAGAAAAGCCACACCTTTAACTGTCGGATGTTGGTGAAGTTCGGCCATGGAGGCCCCGGAgtggaggatggagcaggaagGCCACGTTACGAGACCATGCAATGTTTCGCGCTTACCCAGCCTAAAGCCATGATGGAGGAGGGCGAAGATCTGCAGTCTTGTATGATCTGTGTGGCGCGGAGAGTGACTGCCGTGGAGCGCACAGAGAGATTCAGCACCAGGCACGAGCTCTCAGgtAAGCTGATCGAGATCGAGCAACAAAGCTCCTTACACACCACTATGCGTCCTGGCTGGGAGGATCTGGTGCGCAGGTGTTTGCAGATGTTCCTGCATCACAGTGAAGGTCAGCCCTGGTCCTGCAAACGACACTACCAGGAGGCTTGCATACGTGGTCGAGCAGAGACTCCACTGTACCACTTTTCCCTTTCTGACGGAACTCCAGTAACTGCGCAGACACGCAGCGAGCTATGCCGAAACCCACATACCAACGAACCTCACAGCTACCTCTCCACTCACCTACTGCAGAGGGAACAGAATGGTTACAGGCCAAACCAGGGAGGTGTAATGCGTTCCCAAGGAATGGGTAATTCCCAAATGAACATGACTCCAGGTGGGCAGATGGGCATGGGCAATGCCAGAGGCTACGGCATGAATGACTCAGGGCATATGGGTCCCAGAGGAGGCCCCATGTATGGCCCTGGGAACAGAATGAATCAGATGAACTCAATGCACCAGATGAATCAAATGAACCAGATGAACCAAATGAATCAGATGAACTCTATGAATCAGATGAACCAGATGAATCAGATGAACCAAATGAATCAGATGAATCAGATGAATCAAATGGGTTCAATGAATCAGATGAACCAGATGAACCCCATGAATCAGATGAATCAGCTCAACCCTATGAGTCAAATGAACCAGATGAATCAGATGGGGCATCCCGGAATGAATCAGCATCCACAGCACTTCCATAGCGGAGGATATGGGCTGGGCATGACAAGTCCATCCCATGGTAGCCCAGGTATGAACCCATCTCAGCAGAGCATCATGGGATCTCCACGGATACGAGGAAGCCCCAAGATGGGAGCCAGCCCCTTCTCTCCAGGAGGTATGCACTCTCCTATGGGGCCTGTTGGAATGACTGGTAGTAGTGGCTCCTCTGGTGGCAGCACTTTCTCAAGCAGCTCTCTCAATGCCCTACAGGCCATCAGTGAGGGAGTAGGCTCCTCCCTTCCCTCCACTCTCACCTCACCTTCTCACAAATCAGACAGCTCTCCCAGCATCAACTCCACACAGCCTGGTCAACCAAACCAGTCTGGAGCCAGTAAAGGGCCTAATACGGGTGAAACGAAGAGCCCTGGTAGTACTCCTAGTACAGGGACAGACCAGCAACATGCGAACACATCAGAAACGTCAACAGATAAGCCAGATAGCCAGTGTAACAAAGATGGCCACACTGGAGCTGATGTGCAGCGGAAGGGTCCAGAAGGCAAGGGCCATAAAAAGCTACTCCAGCTGCTTACATCTCCACCAGAAGAGCTTGCCTTGGGAGCAGGAACTGGAGCGCCCCCTCCTGGACGTGCTTCCACTCCCATTGGTGCTGACCCAAAAGAGGCTGGAGGTTGCATGACGAGCCCATCTTCCACAGGtgtatcttcatcatcatctgctTCGTCAGGAGGCACCACAGCGCAGCACGGTTCAGGATGCGTGTCATCAACGGGGTGCATGGGTGGCCATCTCTCTTCTCATTCTCTACAGGAGAAACACAAGATCCTCCACAAGCTCCTGCAGAATGGCAACACGCCGGACGAGGTGGCACGCATCACAGCTGAGGCCACGGGGAAGGTCAGCCTTGGTTCGGAGCACCAGGGCTCAGAGGGTGTAGGATTAGAGGTCAAGCAGGAGCAGCACAGTGAAAAGAAGCCGAACGCTCTGCTCCACTATCTTCTGAACAAGGATGATACCAAGGAGACTGGCATTGAGGGCAAACCAGGACTGGATGAGCTGGAGGGTCGTGGTGTTGGCGCAGTAGGAGTCACAACTACCGACTCCAGCAGCCAGGATAGCAAGGTCAAAATTGAACCGCCTGATGAGTTGCAAACCCTGGAGAGCATTCTAGGAGGCTTGAAACCTGGTTCTGGGATGTTTGCTGATTCTGGAAGCACAGATGGTGAAAATAAGAAAGGGAATGGACCCAACAGCGCTGCACATGATCGTGAGGGTGCAGGGATGGGCCCCGGGCCTCGAGTGCCCTTCCAGAGAGCAATGTCTGTGGACAGTAAACCATTTAGTGGGGCAAGAGGAACGGGCAGGAGAAGTGCTCCCTCCTCTCTCATTAAACAGGAGAGCTTGGACAGCCACATAGGCATGGGAGGTCCTAACAGGCAAATGGGCATGAACCAGATGCCACCTATGATGGGACCAGGTGATTGGCGGATACCAGGCTCTGGGGGCAGTCCAGGGGGCTCTAACGGGCACCCTGGTATGGGTTGTCCAGGGATGGATCCAAATCCCAAAGGAATGATGGGAGGTCCCATGATCAACAGGTCAAACAGTGTGCCAACACCCAGATCCATGCTACAGCAGCAATTAATGGATATGGgtcaaAATGAGATGGGGATGAACACATTCAGAGGGCAGCCACATCCTCCTCAGTCTCCATCATGGCCAGAGTGTGGCATGGGCATGGAGGGACCCCCTAATGCAAACAGcttgCCATTTGGCAACCCCCTGGATGATCTGCTTGCTCCTCCATCCACCACTGAAGGGCAGAGTGACGAGCGAGCTCTGCTTGACCAGCTCGACTCCCTCCTCAACAACACAGACAACCTCGGCCTGGAGGAGATTGACCGAGCTCTTGGGATCCCAGACCTCGTTGGCCAGGGTCAAAGCACAGAGCAACCAGCAACTCCTACAGATGCTTTCCCAGGCCCATCTCCTGATTCATCAATGAGTATGGATCCTAAAGTCATGTATGGAGCAGGTTATCCTGGTCCACCTTCCATGGGCATGCAGGGAGGCTATGGGCCTGGGCCCGGACCTGGTCCTAATCCTGGTCCTGGTCCTGGTCCTGGTCCTGGCCCGGGCCCCATGCAGGGCCATCCGGGACCGGGATTTAACCCAATGATGCAGCAGATGGGTGCGATGGTGAACCACCCCCCTGGCATGATGCGTCCACGCATGATGAACGCTAAGCAGCCACTCAGAATGCATCTTCAGCAGAGGCTTCAGGGACAGCAGtttatgaACCAGAGCCGGCAGGCCATGGCGATGAAAATGGAGACTGCACCAGTGGCAAACCCTGGAGTGAGGCCTGGCATGCAGCCTAGGATACAACCTGGCATGGGAGGACAGcctagTTTTCTGAACGCTCAGATGTTGGCTCAGCGAAATCGAGAGATGATAACTCAGATGAGAAGGcggcagatgatgatgatgatgcagcagcagcaacagcagcagcagcagcaggccgCAACTGGAGGCTTCAGCCCCCCTCCCAATGTCACTGCTCCCACTGGCATGGACACCCCTATGGGAGGAACAGCCATGAACCAGCCCGGCCAGCAGCCATTTAACTATGGAGGAAACTATGCTATGGGCCAGCAGGGTGACCCCTCATTCATGGCCACCGGCAACAGCCCACCTAATATAATGGCCGGTCGTATGGGGGGCCCTCCGAATCCCATGATGCAACAGCACCCTCAGAGCGGACCCATGTACCAGTCGGCAGATATGAAGGGATGGGGTCAGGGTGGCATGCCCATGAACAAttcatacccgcagcagcagcagttctcCCAGCAGGGGGCACCAGCGCAGTATGGGGGCATGATGATGAACGGAGCCATGCAAGGAGGAGTGAATGGGCCAGGACAGATGATGCCAATGCAAGGGCAGATGGGAATGAACCCCATGGGCATGGGTCGCATGCCATTGGGTCCTGATCAGAAGTACTGAAGCAGAGTACTGTTGCAGCGAGAGAGTAAAGCAGAGCAGAGTCATGTCACACCCTGAGCAAACCCTGAGAGCAGACACACAGCACCGCCCAGCTACTGCTGCAAACGGAAAAGCTGGACATGAGACAGAGGACTCGTCCACATCACTGTGTTTTAATACTCACTGAAGCATTTGAGTGTGCCCCAGAACAGAGTTTGAGCGCAACCCTCTATCTGCAGCCAAACTCGTGCTCTTATACgaatctgtgtgtgagtgtaatgcCATACTTCACCACCAGAGGGTGTGCTTTTCTCTCGCTGTGGAACTGCCCTGGTGCTGGGTGGGGATGCACTTTATCACAAGGCTAATAAGGAAAAGAATATCTGCAATATGTCTTGCTCGTTCTAGCCTTATTTAAAGACTCTATATGTTCAGAAAAGACCTTCTTGGTGGTGAGACATGTTTTAGCAGAAACCTTGTTTTCAGGACAGACTGCTCCAATTCCACACTATATGCAGCTACGAGCAATAATCCTCTTCTCTATGCCATATATGTTAAAATGGTGCACCATTAAAATAACAGAGCAAAAGGTACTGCAGTATTAAATGggctttttgttttatatgtgaATAAGAACAGACTTGTACATGCTGTACGCTCCAAATGTATCATATGTGCCCTTATtctatactgtacatttttgcaCAGATTTGGCCTATGTGAGGTCCAGCATATTATATTTTAGGTCAATATTGCTTTGGGTGTTAATTCTATTTTAACTTTCTCAAAgggaatacatttttaaaagatttttatctTTTCTGATCTAGCCTCGTTTTCTTTACAGTATTGCAGTGATGACAGCCATTTGTTTTTGGagggcactttttttttctgtggaatTGAAACGGAGAAATCCTGTCTGATCAAGCAGTTACATTAAGAAGACATTAtggtttatgtttgtgtttttatctcaTGTACATTTTAAGGACATGGTGGTGAATTTGAATAAGATGGTTATTTGCTCAGCTTTTCTCTGTGAGCTAGCTGTTACTGTCATTAATGATTTCACTTCTAAGCGCTGGGTCTTCATAAAtctacctttaaaaaaattgcacaatCCAAAGATATAGATATTTCATTGCTTTGCTGAAATTTTAACCTTTCCAGTAGTCTTTTTGTGTGAATGAACAGAGTGCAAGGTACATATCATATAAGCTTTTCATTATGATTTTGTACTTCATGCTGTACCCAACCAATgtaaattcttttatttcaaGGCCAGTtcatagagatttttttttttaaataatagcagACAAACAGGCAACATATCAGTCTTTTCTCTCCAAGCATTCTTAAAATCTTTGGGCAGgaaatcttttatttcttttgtcttttattttcaagtagaatactttggatcatgatgAAATATATTTGGAAATGAGAAATCACAATGTTTGCTTTGAGTCCTGGGCAAGGGTCTGATTAATTTATGTGGACAAGGGAGTGAATAAGCTGATGTTCTATCGGATGTAAATCGCAATACAATTTATTCTTTTCCTTGATGTTGATATtgttgtaaataaaatttatatttaaacatga

Function

GO: NA

KEGG:

id description
K11256 NCOA3, ACTR, KAT13B; nuclear receptor coactivator 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU358684 lncRNA upstream 579811 5577633 ~ 5580979 (+) True G302585
TU358674 lncRNA upstream 595776 5522534 ~ 5565014 (+) True G302575
TU358685 lncRNA upstream 599266 5560613 ~ 5561524 (+) True G302586
TU358652 lncRNA upstream 689298 5427207 ~ 5471492 (+) False ptprga
TU358624 lncRNA upstream 943365 5175570 ~ 5217425 (+) True G302530
TU359310 lncRNA downstream 2063 6200446 ~ 6293749 (+) True LOC113539422
TU359311 lncRNA downstream 2063 6200446 ~ 6293749 (+) False LOC113539422
TU359315 lncRNA downstream 151809 6350192 ~ 6351096 (+) True G303181
TU359549 lncRNA downstream 299701 6498084 ~ 6502636 (+) True tmem167b
TU359550 lncRNA downstream 299701 6498084 ~ 6502324 (+) False tmem167b
XM_026935350.2 mRNA upstream 56731 6099010 ~ 6104059 (+) True LOC113539546
XM_034314280.1 mRNA upstream 70753 6084440 ~ 6090037 (+) True LOC113539543
XM_034314279.1 mRNA upstream 80984 6073558 ~ 6079806 (+) True LOC113539542
XM_034314282.1 mRNA upstream 89736 6067054 ~ 6071054 (+) False LOC113539544
XM_026935160.2 mRNA downstream 87865 6286248 ~ 6293058 (+) False LOC113539422
XM_026935525.2 mRNA downstream 107294 6305677 ~ 6308696 (+) True LOC113539620
XM_034314181.1 mRNA downstream 107294 6305677 ~ 6308696 (+) False LOC113539620
XM_034314072.1 mRNA downstream 112309 6310692 ~ 6313470 (+) True LOC113539691
XM_034314073.1 mRNA downstream 112309 6310692 ~ 6313470 (+) False LOC113539691
TU358141 other upstream 1691616 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 4662303 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 4663163 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 5295902 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 5315979 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 465691 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 2303255 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 2303255 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 4314288 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 4565891 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile