RNA id: XM_026935242.2


Basic Information

Item Value
RNA id XM_026935242.2
length 3911
RNA type mRNA
GC content 0.47
exon number 24
gene id ipo9
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9437233 ~ 9488029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGAAGCAGGCAAATGGCGTCATTAGCAATCCCCGCCCCCATTGTGCATTGGCGCGCACTGCTCGTGGATGATTCTCTCCATCGCCTCGGAGAGACTGCCGGAAATATGGCGGGTATGGGTGCTACAACTCCCGGCACGATTTCAGTCGCAGGTCCGGTTCAGCAGGGACTTAAGGAGGCCTTAATTGAAACGCTGACCGCGATCCTATCACCGGTTCAAGAAGTGCGCGCCGCCGCAGAGGAGCAAATTAAAGTTTTGGAGGTGACAGAAGAGTTTGGAGTTCACCTTGCAGAGCTCACTGTCGATCCCCAGGGGGCACTTGCGATTCGCCAGCTTGCCTCTGTCATTCTGAAGCAATATGTTGAAACACATTGGTGTGCCCAGTCAGAGAAGTTCAGGGTGCCAGAAACAACTGAAAGGGCCAAGGCAGTAATCCGTGAGTTGCTGCCAGGTGGCTTGCGAGAGTCCATCAGTAAGGTGCGCTCCAGCATCGCCTATGCTGTATCAGCCATTGCTCACTGGGACTGGCCAGAGGCCTGGCCGCAGCTCTTCTCACTGCTTATGGAAATGTTAGTCAGTGGTGATGTCAATGCTGTGCATGGTGCCATGAGAGTTCTCACAGAGTTCACCAGAGAAGTCACAGACACGCAGATGCCGCTGGTTGCACCTGTCATATTGCCAGAGATGTATAAAATCTTCACCATGGCAGAGGTCTACAGCATTCGGACGCGATCCAGAGCAGTTGAAATATTTACAACTTGTGCCAACTTAATCTCTGCTATTGAAGTATTTGAAAAAGGTTCTGCCAAAGCCTTCTTTTTTCCTGTGGTAGAACAGTTCACTGAGGCACTTGTACAAGCTGTGCAGATGCCGGATGGACCCACTTCAGACAGTGGTCTTAAGATGGAGGTCTTGAAGgcaGTGACTGCTCTTGTGAAGAACTTTCCTAAACGCATGGTGTCTTCCATGCAACAGATTCTTCCCATTGTGTGGAACACACTGACAGAAAGTGCTTCTTTTTATGTGAGAACAGAGGTCAACTACACAGAAGAAGTGGATGATCCTGTTGACTCTGACGATCTCTGGACCCTCTGTGCAGGAGAAGTCCTTGGCTTTGAGAATCTGGTCTTCAGTATCTTTGAATTTGTACACACATTGCTGGATAACAATAAGTTTAAGAGCACAGTAAGGAAAGCTCTTCCCGAACTCATCTATTACATTATCCTCTATATGCAAATCACAGAGGATCAGATTAAAGTATGGACAGCCAATCCGCAGCAGTTTGTTGAGGATGAAGACGATGACACCTTTTCATATTCTGTTCGAATATCTGCTCAAGATTTATTGCTGGTCGTAGCAGCAGAGTTCCAGAACGAGAGTGCTGCAGCTTTAGCTGCAGCTGCAACAAGACACCTCCAGGAGGCTGAGCAGGCCAAGAATGCTGGCAGTGAGCACTGGTGGAAAATCCATGAAGCCTGTATGCTGGCTTTGGGCTcagtgaagaccatcatcacAGAGAATTTTAAGAATGGTCGCATACAGTTTGACATGCATGGTTTTCTTGCCAATGTGATCCTTGCTGATCTCAATCTAGcaaCCTCTCCATTTCTGCTGGGCCGGGCTCTATGGGCAGCCAGTCGCTTTACTGCAGCCATGTCCCCAGAACTCATCCAGCAGTTCCTGCAGGCGACAGTAAGCGGCCTACATGAGACCCAGCCACCATCAGTTCGTATCTCTGCTGTGCGAGCTATTTGGGGGTATTGTGATCAGCTGAAGTTGTCGGACAGCACGCATGTTTTGCAGCCCTACCTTCCTAGTATTTTGGAAGGATTAGTGCAACTGGCTactcagttcagttcagagGTCCTTACCTTGGTGATGGAAACTCTTTGCATTGTATGCACAGTGGACCCAGCTTTTACCACTAGTGCTGAGAACAAGATCTGCCCTCTCACTATCGCCATCTTCCTCAAATACAGCAATGATCCTGTTGTGGCATCCTTGGCCCAGGATATTTTTAAGGAGCTGGCTCAGATTGAGCCCTGCCAGGGCCCTATGCAGATGCGCCTCATCCCCACACTTGTCAGCATCATGCAGGCACCACCTGATAAGATTCCCTCAGGCCTTTGTGCTACAGCAATTGATATCCTGACCACAGTCGTTCGGAACACTAAGCCACCTCTGTCTGAGATGCTTGTGTGCCAGGCTTTTCCTGCTGTGGCCCAGTGCACCCTTAGTGCTGATGACAATGCAACAATGCAgAATGGTGGTGAGTGTTTGCGGGCTTATGTCTCAGTGGCTCTGGAGCAGGTGGGTCAGTGGCAGGATGAGCAGGGCCACAGCGGCTTGTGGTATGTCATGCAGGTCGTCAGTCAGCTTCTGGACCCACGCACGTCTGAGTTCACTGCCACCTTCGTTGGTCGCCTGGTTTCTACATTGATTGCTCGTGCTGGCACACAGCTGGGGGAGCAATTGGACCAAATGTTGCGTGCCATCCTTAGTAAAATGCAGCAAGCTGAGACTCTCAGCGTCATGCAGTCTCTGATCATGGTGTTTGCCCACCTGGTCCATTCACAACTAGAGCCTCTATTGGAGTTTCTGTCCAGTCTGCCAGGGCCGACAGGAAAACCTGCTCTAGAGTTTGTCATGATGGAATGGATGAGCCGCCAGCATCTTTTCTATGGGCAGTACGAAGGCAAAGTCAGTGCTATAGCTTTGTGCAAACTCCTTCAGCATGGCATTAACTCCAATGACAAGCGCCTGCAAGATATAATAGTCAAAGGGGAGGAAATCTTTAATCCTGATGAAGGCATTCGCACTCGATCTAAATCTGCTAAAAACCCAGAGCGGTGGACTAACATTCCCTTGCTAGTGAAGATTTTTAAACTTATTGTCAATGAGCTCTCATCTGTAGTGGAGGCGAACTCACATCGAGCAAACCCTGCAGACTGGAGTCAAGATTCAGGAGGAATGTGGGAAGatcaggaggaagaggaggaggaggaggaggaggataaTGAAGAAGGTGAATTAGAAGGGCAACTTCTTTCTGACCTGATATCCTCTAACAAATATGaTGATGATTTttatgaggatgatgatgaagatgaccCAGATGCTTTAAAAGATCCTATATATCAAATAGACCTGCAGGCCTATCTTACAGATTTCCTGTCTCAGTTTGCCCAGCAGCCATGTTACAACATGTTTTTTGGCCATCTAAATGACTCTGAGAGAAAGGTTCTGCAGTCCATTGGAATTTAAACTGCACCTCTACTCATCAACTTTAAAAACTGTGCCCTTGTTTACCACTCACTTGTATGTTTGCAAACTTGACTGGAGTGCCattggaaagttttttttaacctgcaCTTGTGAACCCTAAAACCAGTTGAGggctttgtatttttttcctcaaagacAATGCACATATTGACGTCTCCTGTCTACTCATATACCTAAGGAGATGCAGAAGAAATGCACTGAGGATCACCCAGGACGCAACCCATGCTAAAGAACATAATACTGTTAATGCACAAAATGATACAGTTAACAAGGCACAAGGATTTGAAGGGTATCAGTTAATTTGTTTGCAAAGGGACTAATGTCAagaatggttaaaaagtatacTGTCATCTGTTCTCTCTCATATCAATTCATGGAGATTTACAAATCTTTCTGTAAAGGAAGGCATAGATTTTGATGAACAACAGATGAACCTGATATGGGGAATGTTGGGAAAAATTCATGTGTTTTGTAATGCACAGATATCATGATCCTCATCTTTATGGCTGTGGAATGTGGTGGGTGTGAAAGATTCCACGTGCCATGGTAATAAATAGCCTCTCCTTGCACCCCATTGAAATCTgggaatatgtttaaaaataaacctatGAATTTTCCAACTA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361388 lncRNA upstream 9714 9426043 ~ 9427519 (+) True G304927
TU361387 lncRNA upstream 32966 9404051 ~ 9404267 (+) True G304926
TU361385 lncRNA upstream 41307 9395575 ~ 9395926 (+) True G304924
TU361378 lncRNA upstream 71400 9360330 ~ 9365833 (+) True G304917
XR_003403966.2 lncRNA upstream 124442 9311720 ~ 9312791 (+) True LOC113539732
TU361416 lncRNA downstream 48271 9536300 ~ 9551524 (+) False shisa4
TU361417 lncRNA downstream 57200 9545229 ~ 9551761 (+) True shisa4
TU361423 lncRNA downstream 73356 9561385 ~ 9561606 (+) True G304947
TU361425 lncRNA downstream 87393 9575422 ~ 9576781 (+) True G304949
XR_004580259.1 lncRNA downstream 107099 9595128 ~ 9603865 (+) True LOC113539661
XM_026935711.2 mRNA upstream 1352 9410252 ~ 9435881 (+) False kdm5ba
XM_034314004.1 mRNA upstream 1352 9410252 ~ 9435881 (+) False kdm5ba
XM_034314003.1 mRNA upstream 1352 9410636 ~ 9435881 (+) True kdm5ba
XM_026935713.2 mRNA upstream 1352 9411430 ~ 9435881 (+) False kdm5ba
XM_026935714.2 mRNA upstream 27345 9407525 ~ 9409888 (+) True rabif
XM_026935611.2 mRNA downstream 48096 9536125 ~ 9551625 (+) False shisa4
XM_026935607.2 mRNA downstream 80022 9568051 ~ 9573289 (+) True lmod1b
XM_026935383.2 mRNA downstream 607501 10095530 ~ 10099522 (+) True LOC113539559
XM_026935605.2 mRNA downstream 614285 10102314 ~ 10138886 (+) True gnl3l
XM_026935543.2 mRNA downstream 792491 10280520 ~ 10289815 (+) False mon1bb
XR_004580199.1 other upstream 878322 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 878445 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2657875 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4968059 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7938746 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1024642 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1276245 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1280678 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1280678 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 1623710 11111739 ~ 11112518 (+) True G305727