RNA id: XR_004580200.1


Basic Information

Item Value
RNA id XR_004580200.1
length 5581
RNA type misc_RNA
GC content 0.47
exon number 34
gene id nfasca
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8481095 ~ 8561702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaggaggagagagaaatcTCCGAATACACGACAGTAGGGATGCACCAAGACACCAGAGCgcttacacgcacacacacacacacacacacagacacttccTCTACACTTGCTCTATTTTACTAGTCATTTCTCATTCAGGACACAGTAAGACACAGTGACCCAGACTTCTGAGTGTATGTGGATTTAAACCAAGAGAGTTGGCATCGTAAATCATGCACTGATTGTATCGGATGAGACGAAGGAATTTACCATTGCTGAAGATGCCTCAGGCTGTGGGCCAGCTCTGTCTAACCAGGACAGGAAATCTCATGTGAGAGgtCTAAGAGACTCTGCTTTCGTCATCCATTAGTCCATCAGCCCAGATTTCCCCCTTGTTTTTGTatcaaaGGTGTGCATCGGAGTCAGTAGCGGCGTGAAGGTTGGAGCCAGCCAATCGGAGGAGAGAGATGTGGCCGCAGGGGCAGTGGGCTCCTCTGGCTGTGCTGTCAATCATTGTGCTGCTGCGGAAGGAGGCGGCTCCCATCGATGTCCCTCCAGACCCAAGGATCCAGCAGGACTTGAAACAGCCCCCTACTATTGTGAAGCAGTCAGCAAAGGACTATATTGTGGATCCCCGAGATAACATCATCATTGAGTGTGAGGCCAAGGGCAATCCTGTACCAACATTTTGGTGGAGACGAAATGGGAAGTTCTTCAATGTGGAGAAGGATCCACGTGTGTCCATGCGGAAACGCTCGGGCACACTGGAGATCAGCTTCAGGAATGGTGGAAAGCCTGAGGACTACGAGGGAGAATACCAATGCTTTGCTATGAATGACTTTGGCACTGCCATATCCAACAAAACACTGCTGCGTGTTTCCAAGGCACCGCTGTGGCCTAAAGAGGTTTTGGAGCCAGTGGTAATAAGTGAGGGATCACCTCTTGTCCTGGCCTGTAACCCACCTCCTGGCCTTCCGCCACCTAAAACATTTTGGATGGACAGTAGAATGATGCCTATAGTGCAGGATGCTCGAGTGTCCATGGGCCTGAATGGAGATCTTTACTTCTCTAATGTGCTTGCTAAGGACGCTAACACTGACTACAGCTGCAATGCCCGttttctcttcacacacaccatccaacAGAAGAATCCTTTTATCCTCAAAGTGCAGACAAAAGAACCTTATAATGACACTGTTTACTCTCCAAACGACACTTACATATACGGTGCACGTAACATTCAAGAATCAACACCtacctttctctctcctgtggGAATATCCAGCACCAAGATGGTGCTCCGCGGAGAGGAGCTTCTCCTGGAATGTATAGCTGCTGGAGTTCCAACTCCTGAAATCAAATGGTTTAAGAAAGGAGGGGATTTGCCAGAGAGAAAGGTCAAATTTGAGAACTTCCATAAGACCCTGTCTATAGTTTCTGTGTCGGACGAGGATTCTGGAGACTACATCTGCATGGCCAGTAATAAGATGGGCAGCATCCGCCACACTATCTCCGTTCAAGTTAAAGCTGCTCCTTTTTGGCTACATAAGCCATCTAACCTCGTGCTAGCACCCAATGAGAATGGCCAGCTGCAGTGTTTAGCCAGTGGAAACCCCAAACCTAGCATCCAGTGGCTTGTGAATGGAGAGCCGATAGAGAGCTCACTGGAAAATCCAAGCAGGGAGGTGGTTGGTGATGCGATCATTTTCAGCTCAGTGCAAATTGGCACCAGCGCTGTATACCAGTGCAATGCCTCAAACGAACATGGCTACCTGCTGGCTAACGCATTTGTCAACATACTGGATATGGCACCCCGGTTATTGGGACCCAAGAACCAGCTGATTAAGGTGATCGAGAACAAACAAGCCTTTCTGGATTGCCCTTTTTTTGGCTCACCTTACCCATTTGTGCGGTGGTTTAAGAATGGCCAGGGTATAGTTCCGAATGGTGGGAAGTACAGCTTGCATGAAAATGGTACCCTGGAGATCAAGCGAGTTCGACCTGAAGATGAGGGAACTTACACTTTTGTGGCAAGCAACATCCTGGGCAAAGCTGAAGATCAGGTCCGTTTAGAAGTCAAAGAGCCGACGCGGATTGTCCGAGCTCCAGAGAACCTCTCCTCCAATAGAGGAAGTGTGGCTCGTTTTGATTGCAAGATTAAACACGATTCCTCACTCCCCATTACTGTCACCTGGCTCAAAAACGACAAGCTCCTGCATTTTCCTTGGCTGAGCAGGTTTAAGAAGGAGGAGGACTCATTGTCCTTTAGCAACGTCCAGCCTGATGATGAGGGAACATACACTTGTACAGTTACTACAGAGTTAGACCAGGACTCTGCCTCGGCCCGGCTTACTGTTttagAGGATGAATCCCTAGCTCCCTCAAAACCTAGTGCCTTAGCAGATCGTCCTGATCCTCCTCAGGACCTGGAGCTGTCTGATCTTTCAGCACGCTCCGTCCGGCTCACCTGGATCCCCGGCAATGACAACAACAGTCCTATTACACAATTCCTTGTTCAGTATGAAGAGAACCGGTGGAGACCAGGCGAATGGCAAAATCTGTCCAGTTACGCAGGTGATCAGAACTCTGTGAACCTGAATCTGTCTCCGTTTGTGAACTACCAGTTCAGAGTGATCGCAATCAACAGTGTGGGTCAGAGCCGACCGAGCCGGCCATCAGCCCGCTACCAGACCAGCGGAGCACCTCCTTATGTTTATCCCAGTGGCCTTAAAGGGTGGGGTACCAAGAAAACCAACATGGAGATCACTTGGCAGCCCCTACTTGATAACCAAAGGAATGGTCCTGATCTACGTTATGTGGTCTCCTGGAGGAGGAAGGACTTGGAGGAGGAATGGAATAACATCACCACTACCAATACGAAGCATGTGGTTGTTGATACAGATACTTATGTCCCCTATGAGATCAAGATCCAGGCAGTCAACGACTTTGGTCCAGGCCCTGAGTCAAACATAGTGATTGGCTACTCAGGGGAGGACAGGCCTGTGGAGGCACCTGGAGAGCTCAGGGTATCAAAGTTAAACAGCAATAAAGTGAATATAAACTGGGTCCCTGTTGAGGCGAAATCCATTAATGGAGAGTTTAAAGAGTACAGGCTATATTACTGGAGGGAGGCCAGCTTGGTGAAAGACTTGAAGGTGAATAAGgacaagaaaacaaaaggtTTCTTCAGCGATGTGTCTCAGAACAGTGGCGTCCTTATGGACCTCGTCCCTTACAGCAAATACAAGATGTACATGGTGGTGGCCAACAACAAATTTGAGGGACCACACAGCAACACTGTGGAGTTTCAGACCAAGGAAGGCTTGCCAGGGGCTCCTAAGTTCTTCAGGATTGTCCAGAGGGACAGCAGCACCATTCGTCTAGAGTGGAATAAGCCTCTAGAGCCGAATGGCATTCTGATCGGATACACACTCCAATACAAGACAGTGAATGGGACACAGGAGGGCAATCTACAGATCCTGAGCTTCTTCCCTAATGAGACAGAGTACACCATGCGCTTACCTGACCGCTTCACCCGCTACAAGTTCTACCTGTCTGCTCGGACGCAGGTCGGCTCTGGTGAGGTCTATGCTGAGGAATCGCCTCACTTTGCCAATGAAGAAGACTTTGTGACTTCAGGTACTGACCCTACAGGTGTAGtaATCGATTCTACAGATGCCTTGGATGCCTTTGCAACTCCTCTTCCCCCCTTTTCCCCACCTCCCATCCCAAGTACAACCATTACAACCTCAACAACTACCACCATTGCCCCTACAACTGATGCCACCCCCACTACTCCTGCTCCAACtactccaacaacaacaactactacaactacaactaccACTACCagtactaccaccaccactacaaCCCACCCCACCCTGCCTTTCATGCCGGCCCCGCATGTAAAGATCTGGAATCTGACCGTGGATGCTAACAGTGACTATGCTAACGTCAGCTGGAAGCACAACTTCCCGGTTGACAGCAGCGAGTTTGTGCTAGAGTTCACACTGGACAGTAATGGGTCTATGAAAAGTGTGCTGTTCAAACATGAACCCCCCATTAAGCTGGCTGGGTTGATAGCTGGAGCTAAGTACCGGCTCCGTGTGTATTCCCACGAACAGCCCAGCATCACCAGCGAGTATGTCACCTTCGAGACCAGTGGAGCCTACAGTACGGACCAAGTCGACATTGCCACGCAGGGTTGGTTCATTGGTCTCATGTGTGCCATTGCACTCCTCATTCTCATCCTGCTCATTGTTTGCTTTATCAAAAGAAGCCGAGGAGGGAAatatccagtgagagacaaaaaagaCCTCCCTTTGGACCCTGTGGACCACAAAGACCAGGATGGATCATTTGATTACCAGTTAGCTTGGAAAACGTTGACACGAGGGGGACATGCCGTTCTATGTCCTAATcaaaactaataaataactttgcaaacaaatttaatttaaagattgGCAACAAAGTATAACAAGATTAATTCAACAAACTTAATCTCAATGTTTTACACTAACCACAATCCTGTTAGATCATATTCATCAACAAAATCTAATATACACATTAACAAAAGCTTTGCATTGCTTTGCGAAAAACCACAATCTCATTAGGCAAGCTCAAGCTTCGCTGTTAGCAGTATGGCATTGCTGAAGTCAGCTCTAAAAAGCCTGAGCTGAGACTTAAAACTGAACAATAAGTTCTATTTGGCATTATATAACATGTAGCATACTGTCTGAACACACAGacggtgtgtgtgctgtttggcAGCTAACAAGCCTTTGCATTGTGGCGCTAATCATATCTATGACTTTATTCTATGCAATAGTCATGATAGAAAATCATTAGCAGCATGTGAAGAAGTGCTTTCTAATGTCTTTTTGGCATAACCTAGACTCTGTTCGTTCATCCaccataatatttttataacttCATGAATAGGTACGTCACGCAGAAACTATGATAGAGGTGGTTTTCTTCTGTGGAACATCTTAAAGGAAGTCATAAACATGAGCTAACCAGTGCACTAAAAGACAAAGTGCAGCCAGTTATGAGAGTTTTATCACCTTTTTAGCATTCATCTTAATATAATCGCTAGAAATTACATATCTTCTGATGATTGGCTCAGTATTTTGCAAGTAATTAATAGTTCTGGTACTAACACCTCTGTCCCTCTCAAATTAAATCCTTGTTCCCCCAATCACCGAACATTGTTAAGGAACGAAAACAGGTAAAAAATAGGGGTTTGTCTCTTTGCTATCCGGTGCAGATTGTCCTCTGTGCTTGAAAAATGTAAAGGTAACAAAGGAGTATGGCAGCTCGAATAGTCCCATTCTGTGTACTCTTCACTTGTTGTCCTAGTTGCAGTAAGCGTAGGAATGGAAGGATGCAATTCAGTGGATACAATTCTGTTTACAGGCTTCATTCTTCTAGCTGCAATTTTGCTTTGTGAGCATAAGAATAGATGTTCTGTGGAGTGTCAACTCTTCAGTTTACAGCACTTGTTATTCAAACTGAAATTCAATTTCATGAGGTTAGGATTTGGAAGAGGTGCGAAGTGGGATGTTAGCATAACCACTCATCTTTTTCTCCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU360834 lncRNA upstream 21049 8480377 ~ 8480589 (+) True G304453
TU360831 lncRNA upstream 29324 8472084 ~ 8472314 (+) True G304450
TU360730 lncRNA upstream 99505 8394722 ~ 8402133 (+) True G304367
TU360731 lncRNA upstream 99505 8399071 ~ 8402133 (+) False G304367
TU360658 lncRNA upstream 283503 8217868 ~ 8218135 (+) True G304299
XR_004580236.1 lncRNA downstream 110850 8669638 ~ 8671697 (+) True LOC117599908
TU360968 lncRNA downstream 130705 8689493 ~ 8689709 (+) True G304566
TU360977 lncRNA downstream 159436 8718224 ~ 8718463 (+) True G304575
TU361008 lncRNA downstream 197810 8756598 ~ 8761643 (+) True G304599
TU361011 lncRNA downstream 197810 8756598 ~ 8758550 (+) False G304599
XM_026935269.2 mRNA upstream 240975 8250525 ~ 8260663 (+) True csf1a
XM_026935270.2 mRNA upstream 240975 8250538 ~ 8260663 (+) False csf1a
XM_026935175.2 mRNA upstream 474709 7974591 ~ 8026929 (+) True lrrn2
XM_034313980.1 mRNA upstream 474709 7975518 ~ 8026929 (+) False lrrn2
XM_026935600.2 mRNA upstream 604895 7855844 ~ 7896743 (+) True si:ch211-86h15.1
XM_026935688.2 mRNA downstream 29076 8587864 ~ 8630202 (+) True cntn2
XM_026935229.2 mRNA downstream 73473 8632261 ~ 8636810 (+) True chia.1
XM_026935778.2 mRNA downstream 97871 8656659 ~ 8659829 (+) True chia.2
XM_026935779.2 mRNA downstream 98385 8657173 ~ 8659829 (+) False chia.2
XM_026935339.2 mRNA downstream 114391 8673179 ~ 8683472 (+) True zc3h11a
XR_003403967.2 other upstream 1722280 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4032464 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7003151 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 7004011 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 7636750 863338 ~ 864888 (+) False fbxo42
TU362120 other downstream 1953883 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 2205486 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 2209919 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 2209919 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 2552951 11111739 ~ 11112518 (+) True G305727

Expression Profile