RNA id: XM_026935269.2


Basic Information

Item Value
RNA id XM_026935269.2
length 1941
RNA type mRNA
GC content 0.42
exon number 10
gene id csf1a
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8250525 ~ 8260663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTACTGCTGCGCACAGTTTACTAGTGCTGTAGGGAGCACAAGCCTTTTCACACACTCGTCCTGTCAGGTGAAGATGCACTCTTTGACTGAACAAAGAAGAAATGCAAAGGAACTCCAATGCATCTAAATGTGGACTTTGCTCATTTCTCCTTGCCTAAGCCAGccagatgaacacacacacaacagcccaCAAGGCCAAGATAAGGCATCTGTGCTCCTGCCTTGTCCTGTGCTTGCACTTGGTCTCTGGTGCAGTACCTGGTCCATGTGGACATTCTGTGACTGAGGAACATCTCCTGACTTTAAGAAAACTGATTATAAACCAAGTCCAAAATGGCTGCTCTATAACGTATAGTTTCACTGAACACCAGAACCTGAGCGAGGTCTGTCACATTAAAGCAGCATTCCCTCACATCCTGGACCTTttgaacacacacttcacatatgAAAAGGGTTCTGATAACTATCGCTATACAAGCTCACTAAAGGACCTGATCTACCACATTTATTCCCAGAAATGCATCCCTCCTATCAATGAAGAGATTGAGGAAAATCCAGTGAAGTTTGCAAGACTGTACACGTCTTTGCCCAGGGAGGGTCTACAAAAAACAGAGGAGGTATTTCAAATGTACAAAAGGCTGATGAGTACAAGTGACAAACCTGTAAATTGGAATTGTGAGGATGAGTATGCAAATAATGTTCCAGAATCCACCACTGCACTTTACCCCCAAGCGACAGGTACCCCAGAGTGCCAGTGCTCTTGCCCTGACCCTTTGAAGGCATTTATGTTCACCAGATCTACTCCAAATGCATCACCTTCATCTCTCCACACCCAATCAGGAGCATACATCTTCAGGAACAAGAATGAAGCATCTAGTGCACCTGACCCTGCAGTTAAAGATGAAGCACCAAACTCAACTCAAAATCAGATTTCTGCAATTTCACAAACTTCTACAAACTTCATTACTTTCACCACTCGAAATTTGATGGATAACAGCAGTGATTCTTCTGTACCGATGAGGAGTGAGCCACAATCAGTTACATCCTCGCCCATTGCATCATCAAGTGAATTACCAAGCATACCAACAAGAGCTCCTCTCCAATCAGCAACATCACAGCCctctgaaaaaataaacacaccacTAATTTCTGATAGCAACCCAGTGCTAGTACTTGCCAAGAGGTCTTTAGATACCAGAGAGCAAGGAATGCTGTCTGATTCCTTCTCCAAACTGCTCCAGAGGTGGATTACTGAAACCGTAGGACTTAAGAAGAATAAGATGGTCAAACCTCTAGAGATCACACCTGGAGAAACAGAAAACCCTCCTGTTGAACATGTTGAACAGAACAGTCCTACGCACCTCCAGATGCATCTTCACAAGGCCAAGTCCTTACCAGGGAATGTGTTTAAAATCATCAGCAACGAACCAGACTGCAAAGATTCCAGATGTCAAACAGTCACTGAAGACAGATCAGAGCAGAGACCCAGAGATCGTGTAAAGAGACACTCGGTGGAAAAAGAGTACCAACTTATCCACAGCTCTCTGTACACAACGTTCCTGATTACATCTGTGTGCTTATTACTACTGTTCATCACTGTCCTGTTGTACTGCAAGCAGCAACGGATCAAGGATCTACAAAAAGAAGACAGGACCATACATTTTTGAAGGAAACAAGTGgaaatttggatgatgcaacaTCTTGTTGAACaatattccaaatattccaAAAATTTCATAGGGGTGAGTGTGTTCGTGTAACAGCGTTGAGTGAATTTTGTGGAAgagtaaaatgtacatttttcatgaatgatAATGCATGACTAATGttaaaggatgtttcaagcatgagatgttaaaacgaacacacacacacacacacaaacacgtacaaagcaaaagtcatattttgaagtattttaattattaaagttatAGTG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K05453 CSF1, MCSF; macrophage colony-stimulating factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU360658 lncRNA upstream 32390 8217868 ~ 8218135 (+) True G304299
TU360645 lncRNA upstream 58852 8160681 ~ 8191673 (+) True G304286
TU360648 lncRNA upstream 84616 8161799 ~ 8165909 (+) True G304289
TU360554 lncRNA upstream 267145 7974626 ~ 7983380 (+) False lrrn2
TU360545 lncRNA upstream 346961 7903355 ~ 7903564 (+) True G304193
TU360730 lncRNA downstream 134059 8394722 ~ 8402133 (+) True G304367
TU360731 lncRNA downstream 138408 8399071 ~ 8402133 (+) False G304367
TU360831 lncRNA downstream 211421 8472084 ~ 8472314 (+) True G304450
TU360834 lncRNA downstream 219714 8480377 ~ 8480589 (+) True G304453
XR_004580236.1 lncRNA downstream 408975 8669638 ~ 8671697 (+) True LOC117599908
XM_026935175.2 mRNA upstream 223596 7974591 ~ 8026929 (+) True lrrn2
XM_034313980.1 mRNA upstream 223596 7975518 ~ 8026929 (+) False lrrn2
XM_026935600.2 mRNA upstream 353782 7855844 ~ 7896743 (+) True si:ch211-86h15.1
XM_026935545.2 mRNA upstream 416331 7706228 ~ 7834194 (+) False ppfia4
XM_026935247.2 mRNA downstream 220432 8481095 ~ 8561702 (+) False nfasca
XM_026935249.2 mRNA downstream 220432 8481095 ~ 8561702 (+) False nfasca
XM_034314089.1 mRNA downstream 240975 8501638 ~ 8561702 (+) False nfasca
XM_026935248.2 mRNA downstream 240976 8501639 ~ 8561702 (+) True nfasca
XM_034314088.1 mRNA downstream 240976 8501639 ~ 8561702 (+) False nfasca
XR_003403967.2 other upstream 1471167 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 3781351 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 6752038 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 6752898 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 7385637 863338 ~ 864888 (+) False fbxo42
XR_004580199.1 other downstream 240975 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 240975 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 2252008 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 2503611 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 2508044 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile