RNA id: XM_026935274.2


Basic Information

Item Value
RNA id XM_026935274.2
length 1692
RNA type mRNA
GC content 0.46
exon number 3
gene id apobec2a
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 492045 ~ 495637 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACTGCCCCTCAGTCTCAGCCCCTCACACCCccacagcccacacacacacacacacacagtcatggcAGATCAGGcgagcagcagcagtgtgagaCTCAGGAAGGACAGAGcgatggagagaaagaaggagatggaggagaagaagggAGACAATGGGACTAACGAGGGTGCAGTGAACAGAGCGATGAATGGAGACGAAGCCGTGATGAGCAACGGAGCGCCGGAGAACGAACATCCTGAAGTGATGGAGCTGCCACCGTTTCAGATCATCACCGGGGACCGAATCGACCCCTTGTTCTTCAAGTTCCAGTATAAGAATGTGGAATACTCGTCCGGTCGGAATAAAACCTTCCTGTGCTACCTGGTGAATGAGGTGCGCGGCCCTGGTGATGAGGCTATACTGCGTGGCTATGTGGAAGACGAACACAGTGGCGGCGATCACGCAGAGGACGCCTTCTTCCGTGTCGTGCTGCCTCGCTACGACGCCTCCGTCCGCTACGCCGTCACATGGTACGTCTCCTCGAGCCCGTGTCCCTCCTGCGCCTCAAAGCTGGCCGAGATCCTGCGAGAGCGCCAAACGCTGCGCCTCACCATCTTCTCAGCCCGGCTGTTTGAGTGGGAGGAGCCAGAGGTGAGGGCAGGGCTGAAGGCACTCGCGGGGGCGGGCTGTAAACTACGCATGATGAAGCCGCTGGACTTCTCGTACACGTGGGACACGTTTGTGGAACACGAAAACCAGCGCTTCGAACCGTGGGAGGACTGTCAGGAAAACTACGAGTACTACCAGGACAAACTGGCCGACATCCTGCAGTGAccgatccAAATGGGACGTTTAAGATTGGAGTTGCAGATGGCttatcactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtccttCAACTCTTAAATTTACTTCGAAATCCTGAAACATTTTGTTgtatcacattttttaaactgagtTAATGTTGTGTGAAAAGAGTCTTTTGTATTGCTGTTTAGCtgcatattaatgtttatatataatttccTGTCACATATACAGGAGTGTGTTGATAATCACACCACATTTTATCCGGGTTTAcaataaaatcacaatattGTGTTAAGAAAACAGCAGAAGTTCTGCCTGCGGACGCCACGGCGGGAGTGACGGGGTTTATTATTCCTCATGATCACAGTATTGTGCGTTTAATCGTTTACATTATCAGCACAAGACTAATCTACACACCAGAGTTTAACGCTGTAATTatcagatgtttttattttattttattttattttattttatttttctacagaTGAGCTGTCTCACCTTCATTCTGcgctttgtttttattcttcttcacATTTCGAAATGTTTTATATGGTTTAAAAACAATGCAGCACAGAAACGGAGCTCATTTAGTTTAACTCTTCTATCCTGTTTGGGGTccagctaaaaaaataaaataaaataaaataaaatcatataaagtTCTGATTATTTTAGGAGATTACagatgacagtgtgtgtgtttctggtgcAGTTTGtggagggtttttttcccccaaagctTCATAACAGCAGATTAATCCATAATTATAACCAGAGAGAAGGGAAGCCCCTGTTTAATAAAGCAGAacgagcacagagagagagagagagagagagagagagagagagagagagaggagtgttaACA

Function

GO:

id name namespace
GO:0043697 cell dedifferentiation biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354974 lncRNA upstream 131787 356762 ~ 360258 (+) False dram2b
TU354966 lncRNA upstream 137613 351660 ~ 354432 (+) False dram2b
TU354931 lncRNA upstream 237813 251723 ~ 254232 (+) True G299528
TU354922 lncRNA upstream 255555 236076 ~ 236490 (+) True G299522
TU354869 lncRNA upstream 274636 209994 ~ 217409 (+) True G299482
TU355032 lncRNA downstream 22780 518417 ~ 520943 (+) False cdkn1a
TU355052 lncRNA downstream 69639 565276 ~ 565508 (+) True G299618
TU355059 lncRNA downstream 105921 601558 ~ 602113 (+) True G299625
TU355092 lncRNA downstream 183312 678949 ~ 683096 (+) False LOC117599902
TU355093 lncRNA downstream 183312 678949 ~ 726922 (+) False LOC117599902
XM_034313965.1 mRNA upstream 52868 431512 ~ 439177 (+) True arl8a
XM_026912036.2 mRNA upstream 82595 406108 ~ 409450 (+) True btg2
XM_034314151.1 mRNA upstream 111502 376562 ~ 380543 (+) False zgc:153675
XM_034314150.1 mRNA upstream 111504 376565 ~ 380541 (+) True zgc:153675
XM_034314472.1 mRNA upstream 133679 351588 ~ 358366 (+) False dram2b
XM_026935277.2 mRNA downstream 7832 503469 ~ 508353 (+) True srsf3b
XM_026935276.2 mRNA downstream 19903 515540 ~ 520513 (+) True cdkn1a
XM_026935275.2 mRNA downstream 22930 518567 ~ 520513 (+) False cdkn1a
XM_034314462.1 mRNA downstream 26739 522376 ~ 530478 (+) True tmcc2
XM_034314463.1 mRNA downstream 26741 522378 ~ 530478 (+) False tmcc2
TU354973 other upstream 131787 356762 ~ 360258 (+) True dram2b
XR_004580271.1 other downstream 22930 518567 ~ 520887 (+) False cdkn1a
TU355161 other downstream 347343 842980 ~ 844811 (+) False LOC113539702
TU355179 other downstream 367701 863338 ~ 864888 (+) False fbxo42
TU355411 other downstream 1001223 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 1001223 1496860 ~ 1497627 (+) False LOC117599925

Expression Profile