RNA id: XM_026935291.2


Basic Information

Item Value
RNA id XM_026935291.2
length 8617
RNA type mRNA
GC content 0.50
exon number 50
gene id cacna1da
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1660208 ~ 1752294 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcacgcacgcacacggcTCTGAGGATGCTCTCGTGCGCGCTGGCGTCCTACACGGCTCGCGCTCGCACTTCCAGCGAAAAACATGGAACGTTATAATTCTAATAGCGAACGCGTGCGTGTGCATACGTGTGTCTCACGCGCCTCGAGCTAATGACTTTAAATCCGCCGTCGGAGGCCGGAGCTGAGCGATTCTGGTCGCGGAGGTTTCAATACGGATCTGAACGGAGCGCCAGACCTACGATAAAGTCCTCAAAGAAGAGGCAAATTATGCCAGCAGCACCAGTGTCCCTGTTCCTGGTGACGTGCCGGCGTGTTGGTGAGAAAGCCCCGCCCCTCCATCCCAGTCCCCGCCCTCTCCCCCGCCCCTTTCCCCTCTCCCCTGGGAGGCTCGTGCCGGTGGATGCCCCGCTCCGGCCCAAGCCTGCACCATGAGCGTCAACGGCCCGGTCCCGTCACCTGTCCCGCCCCCCGCCGACACAGAGGATCTGCCCACGACGTCGGTGGCACCGGTGGGCTCGCTGGCACAGAAGAAGAGGCTGCAGTATGCCAAGAGCAAGAGCACCTCGGCCAACACACGGCCACAGAGGGCGCTGTTCTGCCTGAACCTGAACAACCCGTTTCGCCAGGCCTGCATCAGCATCGTGGAGTGGAAGCCATTTGATATCTTTATACTACTTGCTATTTTTGCCAACTGCATGGCCTTAGCCATCTACGTCCCGTTTCCTGAAGACGACTCCAACTCGACCAATCACGACCTGGAATCAGTTGAATATGCCTTCCTCATCATTTTTACAGTTGAGACCTTCCTAAAGATCATAGCGTACGGGTTAGTCATGCACCAGAACGCGTACGTCAGGAACGGCTGGAACATGCTGGATTTTGTCATCGTCGTCATTGGACTGTTCAGTGTTATCCTAGAAGTTGTGACCAAAGAAGGGGGTCAGCAGGGATCAGGAAGCCCTGCCCCCTCACACGGCCATGGAGGCAAACCGGGAGGCTTCGACGTCAAAGCGCTGCGAGCCTTCAGGGTGCTGCGACCCCTTCGCCTGGTCTCAGGAGTACCTAgtTTACAGGTAGTGTTGAACTCCATCATTAAAGCCATGGTTCCTCTTCTCCACATCGCTCTGCTGGTCCTCTTCGTCATCATCATCTACGCCATCATTGGCCTTGAGCTCTTCCTCGGCAAAATGCACGCAACCTGCTATATAGTTGGGTCAGctttgaTAGCGGTGGACGACCCAGCTCCCTGTGCAATAAACGGTAATGGCCGTATCTGCACCCTGAACAATACAGAGTGCAGGGAAGGCTGGCAGGGTCCCAACGGCGGCATCACCAACTTCGACAACTTCCTGTTTGCCATGCTAACGGTGTTCCAGTGTATCACTATGGAGGGCTGGACAGACGTGCTGTACTGGacgaATGATGCGATGGGGATGGAGCTGCCCTGGGTCTACTTTGTGAGCTTGGTCATCTTCGGCTCTTTCTTCGTCCTGAACCTTGTTCTGGGAGTGTTGAGTGGTGAGTTCTCTAAGGAGCGAGAGAAGGCGAAGGCCCGCGGAGATTTCCAGAAGCTCCGTGAGAAGCAGCAGATGGAGGAGGACCTGAAGGGCTACCTGGACTGGATCACACAGGCCGAGGACATCGACCCTGAcaatgaggatgaggaggatgggAGCAAACACAACCGGGTCACAATCGCTGACATcatgaacaagaagaagaaagggttAGCCTGGTTCAGTCACTCTACTGACACTCACGCGAGTGCTCCGGCGAGCGATACCGAATCTGTCACCATGGAGAAAGATGACGAGAAATGCTGTGGCGCTCTGTgTCAGAAAATTTCCAAGTCAAAATTCAGTCGGCGCTGGCGTCGCTGGAACAGGTTCTGCCGCAGGAAGTGCCGCTTGGCCGTGAAATCTGTGCCGTTTTATTGGCTCGTGATCATTTTGGTGTTCCTCAATACGCTCACCATTTCATCAGAGCACTACAACCAACCAGAGTGGCTCACAGAAGTGCAGAgggtgGCCAATAGGGTGCTGCTGGCGATGTTCACGCTGGAGATGCTAGTGAAGATGTACAGTCTGGGACTGCAGGCCTACTTTGTCTCACTCTTTAACCGTTTCGACTGTTTTGTCGTATGCAGCGGAATCATAGAGACGATCCTAGTGGAACATGAAATCATGTCTCCACTCGGCATCTCCGTGCTCCGCTGTGTACGACTCATGAGGATCTTTAAAGTTACACgTCGCTGGGCATCTCTCAGTAATCTGGTGGCATCTCTGCTGAACTCAATGAAGTCCATCGCCTCgctgctgctcctgctcttcctcttcatcatcatcttcgcTCTGCTCGGGATGCAGGTGTTCGGGGGCAAGTTCAACTTCGACACCATACACAAAAAACGGAGCAGCTTCGATAACTTCCCCCAGGCCCTGCTGACCGtctttcagATTCTGACCGGTGAAGACTGGAACCAGGTGATGTACGAAGGCATCAAGGCGTATGGCGGTCCTTCATCATCGGGAATGATCGTGTGTATTTACTTCATCATCCTCTTCGTGTGTGGAAACTACATCCTGCTGAACGTGTTCTTGGCCATCGCCGTGGACAACCTGGCAGGCTCGAGATCACTCGGTGCTTCAACGAAGCCAGTCGATGTCAAgcaagatgatgaagatgaagagttCAAGGTTCCAGTTGAAGATGAGAGGGAGAATGCAGaagaggaggatgaagggGAGGTTCCATCAGGGCCTCGTCCCACCATCGCAGAGCTGGTGAGGAAAGAGAAGATTGTACCGATACCAGAGGGCACCGCCTTCTTCATATTCAGCAGGACAAACCCgcttcGTGTTCTGTGCCACAAGATAATAAACCACCACCTCTTCACCAACCTCATCCTCGTCTTCATAATGCTCAGCTCCGTCTCCCTCGCTGCTGAGGATCCAATCAGAAACCACTCTTTCCGCAATAACATACTTGGTTACGTTGACTATGCCTTCACAGCTATCTTTACTGTAGAGGTCATGTTGAAGATGATGACGTTCGGAGCGTTTCTCCACAAGGGGGCGTTCTGCAGGAACTACTTTAACCTGCTTGACCTGCTGGTGGTCGGTGTGTCTCTGGTGTCATTTGGGATACAATCTTCGGCCATCTCTGTGGTGAAGATTCTGCGTGTACTGAGAGTGTTGAGGCCCCTCAGAGCCATCAACAGAGCCAAAGGACTTAAGAACGTggtccagtgtgtgtttgtggccaTCAGGACCATCGGGAACATCATGATCGTCACAACGCTGCTCCAGTTCATGTTTGCCTGTATCGGAGTGCAGCTTTTCAAGGGGAAATTTTTCCGCTGCAATGACGAGGCCAAATCAACCTCGGAGGAGTGCAAGGGCACATATATCTTTTTCAAAGACGGAGACATGAATAATCCCACCATCCAGAAACGTCACTGGCACAACAGCGACTTCAACTTCGACAATGTGCTCATGGCCATGATGGCGCTCTTCACCGTGTCCACGTTTGAGGGCTGGCCGGCGCTTCTGTACAAGGCCATCGACTCGAACAAGGAGAACTTTGGTCCTATCTACAACTACCGTGTGGAGATCTCCATTTTCTTCATcatctacatcatcatcatcgccttCTTCATGATGAACATCTTTGTGGGTTTCGTCATCGTGACGTTTCAGGagcagggagagaaagagtatCGGAACTGTGAACTGGACAagaaccagCGCCAGTGTGTGGAGTACGCACTTAAAGCCCGACCTCTGAGGCGCTACATCCCTAAAAACCCCTATCAGTACAAGTTCTGGTACGTGGTGAACTCCACAGCCTTCGAGTACATCATGTTTGTCCTCATCATGCTCAACACGATCTGCCTGGCTGTGCAGCACTACGGGCAGTCTAAGGCGTTTAACTACGTGATGGATATCCTGAACATGGTGTTCACTGCAGTCTTTACTGTGGAGATGGTCCTCAAACTGATCGCCTTCAAACCCAAGCATTATTTCACTGATGCTTGGAACACGTTTGATGCCTTAATTGTAGTTGGTAGCGTCGTAGATATTGCTATCACTGAAGCCAACCCCGCGGAGGGGGAAGAGTTGCCGCCCACAGAGGCTCCACAGGTGGATGAGTCAGGGAATGCAGAAGAAAGCTCTCGCATCTCCATTACCTTCTTTCGGCTGTTCAGAGTGATGCGATTGGTCAAGCTGCTCAACAGAGGGGAGGGAATTCGTACCCTCCTGTGGACCTTCATCAAGTCCTTCcagGCTTTGCCATACGTCGCTCTGCTGATCGCCATGATGTTCTTCATCTACGCCGTCATCGGCATGCAGatattTGGGAAGATAGCCATGGTAGAGGGTACACAAATCAACCGGAACAACAACTTCCAGACTTTTCTGCAAGCTGTGCTTCTGCTGTTCAGatgtgcGACAGGTGAAGCGTGGCAGGAGATCATGCTGGCGTGTTTGTCCGGGAAACTCTGTGACCCAGAGTCGGACTATAATCCTGGAGAGGAGATGACCTGCGGCAGCGGCTTCGCAATTGTCTACTTCATCACATTCTACATGCTTTGTGCATtcctgATCATTAACTTGTTCGTGGCCGTCATCATGGACAACTTTGACTACCTGACTCGTGATTGGTCGATCTTGGGACCACATCACCTCGACGAGTTTAAGAGGATATGGTCCGAATATGATCCAGAAGCcaagggcagaataaaacatttagatgTAGTGACGCTACTGCGGCGCATTCAGCCTCCGCTTGGCTTCGGAAAGCTGTGTCCTCACAGAGTAGCATGcaagcGTCTAGTGGCCATGAACATGCCCCTGAACAGTGATGGCACCGTGATGTTTAACGCCACACTGTTTGCACTGGTCAGGACTGCACTGAAGATCAAAACAGATGGTAATTTGGAGCAGGCAAATGAGGAGCTGCGAGCCGTCATTAAAAAGATCTGGAAGAGGACCAGCATGAAGCTGCTTGACCAAGTGGTGCCCCCTGCTGGTGATGATGAGGTAACCGTGGGGAAGTTCTATGCCACCTTTCTGATACAGGACTACTTTAGGAAATTCAAGAAACGCAAAGAAGAAGGACTGGTAGGAGTGCATCCTACACAGAACAACACGGCCATCACGCTGCAGGCTGGTCTCCGCACGCTGCATGATATTGGGCCCGAAATCCGCCGTGCCATATCATGTGACCTCCAGGATGAGGAGCTAGTAGACTTTATACCTGAGGAGGACGAGGAGATTTATAGGCGAAACGGTGGCCTTTTCGGCAATCACATTAACCACATCAACGGCGACCCCCACCGAGGTTCCGGGCATCAGACCAACGCCACGCAGCGCCCCCTGCAGGTTCATCCTCCCCCGCACTACGCCGACATGGAACAGCCCGTGGGCCGGCTGGACCGCGCCAACGCCATGGCCCAacataatcatcatcaccaccatcatcatcatcacaatcaccACAATTCTTACAGCAAGTCACCCAAGTCCACCAACATCAATCTGAACAATGCTAACATGTCCAGCCTGCCCAATGGAGGCCATAATCGTTACTACCAGCATGTCCCGGCGAACGGATACACCGGATCGTACTACCCAGGGGAATATGAAAAGCCCAGGACGCCACATGGACAGAGAAGGCGCTACTATGAGACCTATATTAGGTCACGTGGCAGCATCAGGCGCCAACCCACTATTCGTCGCGAGGAAGAGATTGAGGAAGACCGCTATTCTGGGGAGTACTACAGCGGAGAAGAGTTTTATGAAGAAGACGGCATGCTGTCAGGAGACAGGTATCCCAGCAGCGATCAGGAGTACGAGACTCCCCGTGGCTACCATCATCCCGACAGTTACTATGACGATGACGAGCAGCCCCTATACCACGACTCATATAGGTCACCAAAGAGACGGCGGCTTCCTCCCACACCACAAGGCAACCGGAGGCCATCTTTCAACTTTGAGTGTCTGCGCAGACAGAGCAGTCAGGATGAGCTTCCTCGCCAGCGGACTGCTCTTCCGCTCCATTTAATGCAACATCAGGTGATGGCAGTAGCAGGGCTTGACTGGAGTAGAGCTCACGGACTCTCGCCTACTCGCTCCACTCGTTCATGGGCCACGCCTCCTGCCACGCCTGCCAGTAAAGACCGCACCCCCTACTACACACCGATGATCCGCGTGGACCGCCCGCACCGGGACAGCATGGGTGGCAGCTACTGCTCGGTGAGGAAGAGCTCGTGGTACACAGATGAGCCGGAGTACCAGCAGAGCACCTACTCACCGGTGCACCTGCAAATCCCACATGAGTACCGGAACCAGTACCACCAGAAGAGAGGCAGCGCCACCAGCCTTGTGGAGGCGGTTTTGATATCAGAAGGACTGGGCAGATACGCTAAGGACCCAAAGTTTGTGGCGGCTACAAAGCATGAGATCGCGGACGCCTGCGATATGACCATCGACGAGATGGAAAGTGCGGCGACCCACCTGCTGAACGGCGGAGTCATGCCCAGGGTCAACGGGGTTCACGTTTACCCAGTCATGAGTCAAATAGAGTACGATGTGCAGGACGTTTCGGCCAACTACAGCGACGAAGAGCCAGAACCCGAATCCCGGCCTCGTTACGAGGAGGACTTGGCGGACGAAATGATATGCATCACCACATTATAGCGTCTGGTTAGCAGCCAAAGCTAATGGACTTAGTTGTCACACAAAACCGAAATGCATCTATTGGCTTATAACCAAAAGAAGTGCCTTCCTTTCCAGTGGAGTAGAAAGGCACCAGGAGTAAGGACACGCTTGCCCCGCCTACTCTCTCCCTATTGGTCAAGGTGCATATCCATCACCGGGTGGGGTGGGTGGGTGTTAACTTTGCCAGGAAACAGTGCTCCACTCTGTTGGACTTCTGATGGTGATGCTTTGCAGCTCAAGTCTGTGCTGAACTGTGACTGGTCGCTTGTGCTGTCACTGCAGGCTACGGCCCAATGAGCAGCGACCGTCGGTATTTTCTCCAAGGTGATGAcaatcagattaaaaatgtcattaccTCAGTCACTTTATTAAGGGTTTTTGCATATCACGCATGTTTTCAATGCAAGCTAAGTAAGGCATATCTCCCCGTAGAGGCTTTAGTTTCAATTGATTAATTAAAGGTTGATGAGAATTATTAACTCTTTAGATAACTAACACCAATAAGACCATTCTGGACTTAAGAATAAGAAGAGAtcttattgcattttaaaaatctggaaATTAGTTACCTTTTTCTTGAAAAAGATTGCAGCGTTTGTGTTGAATGCACTAGCAGGcaggttatttttttaactctagGTTTAGCCTGTTTGGGCTTTCATAAATTACTATGCTGTAAATtaattgtaatataaaatataaagaaactttGGAAAGAGACATTTTGTAATTATGTACTGTAGGAAAAAGGAATCAGCAATATTGATCCTAATTGATGTTACTGTAttatggagagaaaaaaaaaattgtgtgaatTTATTAGATACTGgactcttatttatttatttatttattttgctcatATGCATTCTTAATCGGTatgtgtggagaaaaaaaaactgtttttaatgaGAGGAAATTCATCTCACACCTGCACAAGGTATGCaaatagtttttgttttgacatttcatctttttctgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgattacatGAAACAGCACCATTACCTATTCCGTCCCTGAAATCCCCAGCATGCAGTACGGATTATAAAGTAAGAATCTCCGCTGCTGGACACTTCTCTAGGGCTTATGGAACTGTTGTACATGtagttgtgttattgtgttaccGAGGAGGTTCACTCCCAGTGTTTTCGTTGTGTATTTTGTGCACAGGAGGTTTGATGTTAAATGCTTTCACGCATTGACGATGCTGCTTAAATCATGTATTACGACAAAAGACTGAGAGGACGGCCGACGCTGGCATGTGCTAGTCTCATTTTCCCTTTAGCGCTACGGACTGAAACAAGCCTGCTGAGGGGCGTAACGGTCACGAAAGTGGAACCGTCAACGAGACAGGGCTGGAGTGGCAAAGCAATATCGATTCCTATTATGTGTCTCACTCGCTGTCTCTCTGGCTTCTACATATACCTCCATTAACAAAGGAAGACataggccctgatttactaagagCCCGAATAGCGTGTGCTAATTTTTGTATGCGGTGAATGATGAATTGGGCGTGTTGCAagtgatttacaaagaattaGCGTAAATTACCTCACATGAAAAGTAGAAGGTGGTAAGCGTATGTAAATTAGGTTTTGGCACGTGTTATTTGTTCTTGATAGCCTTCAGTCTCCAGGAAGAGTAAAACTGAAACTCGCCACACAGGCGTAATGGCGTGACCAAGGTTGTGTGCGTTTTGTGTGAATGAAAGCCTTTTCACAggttgtgtttaaatgctgttggcATCATATGTGGTGAATGTCTAACATGAAACCAACTTTGCTCTGggaatatttattctttttctagGGCTGCAAAAAAAACtaacttttttaaatagtgaATTATTCATGTGAATTAAT

Function

GO:

id name namespace
GO:0050885 neuromuscular process controlling balance biological_process
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0009925 basal plasma membrane cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04851 CACNA1D, CAV1.3; voltage-dependent calcium channel L type alpha-1D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355461 lncRNA upstream 19780 1626093 ~ 1640428 (+) True G299916
TU355401 lncRNA upstream 37624 1620800 ~ 1622584 (+) True G299862
XR_004580234.1 lncRNA upstream 55622 1600693 ~ 1604586 (+) True LOC117599906
TU355388 lncRNA upstream 165563 1486450 ~ 1494645 (+) False erc2
TU355383 lncRNA upstream 222951 1408502 ~ 1437257 (+) True G299851
TU356239 lncRNA downstream 68327 1820621 ~ 1822339 (+) True G300447
TU356266 lncRNA downstream 102407 1854701 ~ 1857401 (+) True G300467
TU356290 lncRNA downstream 168233 1920527 ~ 1924467 (+) True G300479
TU356299 lncRNA downstream 191132 1943426 ~ 1944198 (+) True G300487
XR_003403969.2 lncRNA downstream 255316 2007610 ~ 2021578 (+) True LOC113539753
XM_034314499.1 mRNA upstream 39858 1608449 ~ 1620350 (+) True ninj1
XM_026935723.2 mRNA upstream 39858 1608706 ~ 1620350 (+) False ninj1
XM_026935724.2 mRNA upstream 39858 1610530 ~ 1620350 (+) False ninj1
XM_034314475.1 mRNA upstream 161036 1497715 ~ 1499172 (+) True LOC117599925
XM_026935442.2 mRNA upstream 167913 1448442 ~ 1492295 (+) False erc2
XM_034314189.1 mRNA downstream 8570 1760864 ~ 1812936 (+) True cacna2d3
XM_034314190.1 mRNA downstream 11165 1763459 ~ 1812936 (+) False cacna2d3
XM_026935298.2 mRNA downstream 126309 1878603 ~ 1920454 (+) True slc38a3a
XM_026935300.2 mRNA downstream 126311 1878605 ~ 1920454 (+) False slc38a3a
XM_034314389.1 mRNA downstream 137017 1889311 ~ 1920454 (+) False slc38a3a
TU355411 other upstream 161721 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 162581 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 795320 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 815397 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 1139321 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 2714783 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 4911780 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 6749344 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 6749344 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 8760377 10512671 ~ 10513270 (+) True G305515

Expression Profile