RNA id: XM_034314389.1


Basic Information

Item Value
RNA id XM_034314389.1
length 1825
RNA type mRNA
GC content 0.54
exon number 17
gene id slc38a3a
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1878603 ~ 1920454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGCTGCTTCGTTCAGCATTTACGGATTGGACAGGCGAGCATCCGACGTCTTTATCTGGATAAACCCTTCTCTTTCACGTGTACTAGAAGAACAGATGGAGGCCCGCGGTGTCCTTGCAGTTTTCCGAGATCTCAGACGAGCTGGGAATCATTGGGGGAATCGCTGCTGAAGGCCGTCTGTAGCTTCTGGAATAAATCCCCATTGTCCAAGTCATGGATCCGGCGCCGGCCGAGATGAACGCACTTCCTAATGGGAAAGGGCATGAAGAAGGAGCCGAGACGACGGCCACGCCTACCTCGATCAAATCCCAATCAGACGACACGGCTCAGGAACTCGTGCCTAATAGTACAGAAAACTCCAGTCACAGCAGAGCTACAAGAGACACTGAAGGCACCACGGCCGAGAGTTCAGAGTTCCTCTCTAACGGCGACGATAAGAAACCGCCGCGATTCACAGACTTTGAAGGAAAGACTTCGTTTGGGATGTCAGTCTTCAACCTGGGAAACGCCATCATGGGGAGTGGAATTCTGGGATTGGCGTACGCCATGGCGAACACCGGCATCGTCATGTTTCTGTTCCTCCTGACGGCTGTGGCGTGTCTCTCGGCCTACTCCATCCACCTGCTGCTCAAGGCCTCGGGCGTCGTCGGTATCCGTGCATATGAGCAGCTGGGTTTTCGAGCGTTCGGTACGCCAGGCAAAATGGCCGCCGGCATCGCGATCACGCTGCAGAATATCGGAGccatgTCCAGCTATTTGTATATAGTGAAGTATGAATTTCCTCTGGTGATTCAGGCCTTTCTCAGGGTGGACACACCAtctgaggaaTGGTATCTGAACGGTAATTACCTGGTGGTGATCGTGTCCGTCTGCGTCATTCTACCTCTGGCTCTGATGAAGCAGCTGGgctatCTGGGCTACACCAGTGGGTTTTCTCTCAGCTGCATGGTCTTCTTCCTTATCGCAGTGATTTATAAGAAGTTCCACGTGTCGTGTCCCTTCACCGACTTCTCCTCCTCCAATCGGACGGCAGGGTTAAACAGCAGCGGCGTGGTGGTGGAGCACAGCGGGGTCACCATGACTCCTGAGGACGATCCCTCCTGCACCCCTCACATGTTCAACCTCAACATacagacAGCCTACACCATTCCCATCCTGGCGTTTGCGTTCGTGTGCCACCCGGAGGTGCTGCCGATTTACACCGAACTGCGCAACCCCACCAAGAAAAAGATGCAGCATGTGTCCAACATCTCCATCGCTGTCATGTACGTCATGTATTTCCTGGCTGCGCTGTTCGGATATCTGACCTTCTACGataagGTGGAGGCTGAGCTGTTGCACACCTACAGCAAGATCGACCCGTACGACACACTGATCCTGTGTGTGCGCGTGGCCGTACTGACCGCTGTCACACTCACCGTACCCATTGTACTGTTCCCCgTGAGGCGAGCCATCCAGCAGCTCTTCTTCCCCAACAAGACGTTCTGGTGGCCGAGACACATCGCCATCGccatcctcctcctcaccaCCATCAACCTGCTCGTCATCTTCGCCCCCAACATCCTCGGCATCTTCGGGGTCATAGGTGCTACATCTGCTCCGTGTCTCATCTTCATCTTCCCAGCTGTGTTCTACATCCGCATCGTTCCCAAAGAGGAGGAGCCTGTGCGCTCAGTGCCCAAAATCCTGgcTGCCTGTTTCGCTGGTCTGGGTGTCCTGTTTATGATAATGAGCCTGAGCTTCATCATCATCGATTGGACGTCAGGGAGCAGCAAGTCGAATGGTGGtcattaggccacgcccacatgtgttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU356266 lncRNA upstream 31910 1854701 ~ 1857401 (+) True G300467
TU356239 lncRNA upstream 66972 1820621 ~ 1822339 (+) True G300447
TU355461 lncRNA upstream 248883 1626093 ~ 1640428 (+) True G299916
TU355401 lncRNA upstream 266727 1620800 ~ 1622584 (+) True G299862
XR_004580234.1 lncRNA upstream 284725 1600693 ~ 1604586 (+) True LOC117599906
TU356290 lncRNA downstream 73 1920527 ~ 1924467 (+) True G300479
TU356299 lncRNA downstream 22972 1943426 ~ 1944198 (+) True G300487
XR_003403969.2 lncRNA downstream 87156 2007610 ~ 2021578 (+) True LOC113539753
XR_004580183.1 lncRNA downstream 87156 2007610 ~ 2009813 (+) False LOC113539753
TU356296 lncRNA downstream 135951 2056405 ~ 2060641 (+) False mon1a
XM_034314189.1 mRNA upstream 76375 1760864 ~ 1812936 (+) True cacna2d3
XM_034314190.1 mRNA upstream 76375 1763459 ~ 1812936 (+) False cacna2d3
XM_034314186.1 mRNA upstream 137017 1660208 ~ 1752294 (+) False cacna1da
XM_034313997.1 mRNA downstream 5723 1926177 ~ 1977132 (+) True gnai2a
XM_026935221.2 mRNA downstream 73759 1994213 ~ 1998435 (+) False inka1a
XM_026935222.2 mRNA downstream 74048 1994502 ~ 1998435 (+) True inka1a
XM_026935223.2 mRNA downstream 75545 1995999 ~ 1998435 (+) False inka1a
XM_034314432.1 mRNA downstream 132629 2053083 ~ 2059985 (+) True mon1a
TU355411 other upstream 390824 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 391684 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 1024423 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 1044500 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 1368424 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 2546623 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 4743620 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 6581184 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 6581184 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 8592217 10512671 ~ 10513270 (+) True G305515

Expression Profile