RNA id: XM_026935314.2


Basic Information

Item Value
RNA id XM_026935314.2
length 8146
RNA type mRNA
GC content 0.50
exon number 37
gene id kif21b
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6589042 ~ 6651029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTGCAATACGCGCAGAGGCTGTTCGGCCAGACTCCTGTCAGGACACTGCGAGGTGGATATGAAGACGgaatttatgtttgttttgttttttgttgttaaacaGGGTTTAGAAGAGGGCAGTGGACAATGTGTGCGTTCGTGGAGCTGACCGTCGTTCCGACGTGAGCGACCAGGATGCCGTTGTTGTGCGTTTGTTAGGCACAACAACATCCTTTCTGCtgataacaaacacacaaactgacAGCTTTGACAGCTTTTACAGCCACAACAACAGCCAAAGGAAGCCATGGCGACACAGAACGACTGCTGTGTGAAAGTGTGCTTGAGGATCCGTCCTCAGATGGCGAAGGAGAAGATCGAGGGCTGCCACATCTGCACCTCTGTAACCCCCGGAGAGCCCCAGGTGCTGCTGGGTAAAGATAAGGCCTTCACGTATGACTTTGTGTTTGACATAGACGTCCAGCAGCAGGCGATCTACAGCGCCTGCGTCCACAAGCTTATCGAGGGCTGCTTTGAGGGATACAACGCTACAGTATTCGCCTACGGGCAGACGGGTTCGGGGAAGACGTACACCATGGGCACGGGCTTCGACGTGACTGTGAGCGAGGATGAACAGGGGATCATCCCACGTGCCGTGCGTCAACTCTTCCAGGGCATTCAGAGACGTCAAATGGAGGCTCAGGAGAGCGGCACACACCCGCCTGAGTTTAAAGTCAGCGCCCAGTTTCTGGAGCTCTATAATGAGGAGATCCTGGACCTGTTTGACAGCACCCGTGATCCTGGCAGGAAGTCCAACATAAAGATCCACGAGGACAGCAGCGGAGGCATCTACACATCGGGAGTGACCTCACGCCTGGTCAGCTCCGAGGAAGAGCTCCTCCAGTGTCTGAAACTCGGCGCTCTGTCCCGCACCACGGCCAGCACTCAGATGAACGCCCAGAGCTCCCGTTCTCACGCCATCTTCACCATCCACCTGTGCCAGATGAGAGTGTGTCCTCAGACCCAGCTGgcGAACGGGTCTGTGAGTGCTGAAGTGAACGGTGTAGCTGATGGCTCTGTATCCCAGGCTGAGTACGAAACCCTCACAGCAAAGTTTCACTTTGTGGATCTGGCCGGATCAGAGCGGCTCAAACGCACAGGAGCCACGGGCGACCGGGCACGAGAGGGCATTTCCATCAATTGTGGCCTGTTGGCTCTAGGTAATGTGATCAGTGCGCTAGGAGATCAGAGTAAGAAGGCTGGTCATGTGCCTTACAGAGACTCCAAACTCACTCGCTTGCTGCAGGATTCACTTGGGGGGAACAgTCGGACAGTAATGATTGCCTGTGTCAGCCCCTCGGACCGGGATTTCATGGAGAccctaaacacactgaagtacGCTAACAGGGCTCGCAACATCAAAAACAAGGTGGTGGTGAACCAGGACAAGACCAGCCAGCAAATTAGCGCACTGCGGGCCGAGATTGCCCGTCTGCAGATGGAGCTCATGGAGTATAAAGCGGGGAAGCGTGTGGCTGGGGAGGATGGCTCAGAAGGCTTCAGCGACCTGTTCCAGGAAAACTCAATGCTGCAGAGGGAAAACGACAACCTGCGCATGCGTGTGAAGGCCATGCAGGAGACCATCGACCATCTCAACACCCGAGTCACTCAACTCCTGACCAACGAGATTAACCTGCTGCTCACCAAAACAGgGGAAACTAATGAGGAGATCGGGAATCTGATCCAAAACTACATCAGAGAGATTGAAGAGCTCAGGTCTAAGTTGTTGGAGAGCGAGGCGATGAACGAGTCTTTGAGACGCAGTGTGTCTCGTCTCTCCTCCCGCTCTCCTTACCCTGCCTCTCATGCACCTCCACCTGGACACCCCCTGGGCTCCTCCCCATCCGTTTCCATGGAGGCCGAGATGACTGACGTGCTTCGGCGAGCCAAGCTGGACATCGAGAGgctgaagaagaaagagaggaatcAGAGGCGCAAGAGTCCAGAAAGGGAGAAGGGCTTGAAGAAGAGAGCAAAGCTCCAGGCTCAGGAGAACGGGCAGAGctgtgagagaagagagaacgGAGACGGCGACTCGGATAATGAGCCTGAAGTGGAGGGTATGTACCCTCTGCCTGAAGAGGAGAGTGGctgtgatgaagctgaggaggatgaagaagaggagaTCAGGGAGGAGGAAGAATTTGACAGTGACGAAAGCCTGGTGGACTCAGACTCTGACTCCGATGAAAAAGCGAACTTCCAAGCCGACCTGGCTGACCTGACGTGTGAGATCGAGATCAAGCAGAAGCTAATAGATGAACTGGAAAACAGTCAGCGGCGGCTGCTGACACTAAAACTCCAGTATGAGGAGAAGCTCATCCTGCTGCAGAACAAGATCCGTGACACGCAGCTGGAGAGAGACCGCGTGCTGCAGAACCTCATGTCCATGGAGAACTACACAGAGGAAAAGGCCAGCAGGATCAAGGCGGAGTACGAGAAGCGTCTGAAGGAGATGAACAGGGATCTGATGAAGCTGCAGGCGGCGCAGAAGGAGCACGCGCGCCTGCTGAAGAACCAGGGCCGATACGAGAGAGAACTTAAGAAGCTGCAGGCTGAAGTGGCTGAGATGAAGAAAGCCAAGGTAGCATTGATGAAACAGATGAAGGAGGAGcagcagaggaggaggatgattgAGGCCAAAAGGAACAGAGAGATTGCTCAGCTCAAAAAGGAACAGCGACGGCAAGAGTATCAGATCCGTGCTCTTGAGTCGCAGAAACGGCAGCAGGAGATCGTCCTCAGGAGGAAGACTCAGGAAGTTACTGCTCTGCGCCGACTGGCTAAACCCATGTCAGAGCGTGTGGCGGGCCGCGTCTCTCGTCGTCCACCCAGCGTGGACTCCGGAGCCGAGCTCTCAGCCagcaccaccacctccaccaccacgtCATCAGAACCCGAGTCTAGCCGTTCTGTCTCCAGCATCGTCCGCCAGTGGAACAACAAGCTGAATGGCTACCTGGGAGAGAGCGAGGGATCTGGGGGAGGATTGTCCCGGCTGGCCAATGGTAGGAAGAAGTTGCAGAAAGGTGTGAGCAGCAGCTTCTCAAAGACGGCGCGGCAAAAATGGCAGGCTCTGGAGAGGAGGGTCATGGACATAGTGATGCAGAGGATGACCATTTCCAATGTGGAGGCCGACATGGACCGCCTCATAAAGAAACGGGAGGAGTTGTCCATGCAGCAGGAGGCGCTGTTGCGTAAGCGAGAGAAGCTCCTGAGCGAGGGGCCtagagaggaggaggacgaaCGAGTTGTTCAGGAGATGAATGAAGAAATCGAGGTGCTCAATGCCAACATCGACTACATCAATGACAGCCTGTCTGACTGCCAGGCCACAATTGTACAGATTGAAGAGACCAAGGATGAGTTGGACTCAGTGGACATGTCGGTGGTCATCAGTTCCTGCTCCCTGACAGAAGCCCGTCACCTTCTGGACCATTTCCTGAAGGCCTCCATAGATAAAAATTTACAGGTGGCTCAGAAAGAAGCCCAGATCAGGCTATTAGAGGGACAGCTGCGACAGACAGACATGATTGGTTCTTCCCATAATCACATGATCTTGGACGCTTTGCGGGAGAAGGCAGAGTGTATCCCAGAGTTACAGGCTCTCATTCACAATGTCCAACAGGAAAATGGCTATGCTAGCACAGACGAGGAGGTTTCTGAGTTTAGCCAGGCCTCAGAAACAAGTTACTCTCAAATGAAATCATCAGCCAGTCAGGATGACTTCAAGATCAAGTCTGAGCCTCGCATCTCAGTTCAGATGAAGGCGGTATCAGCGGAATACTTAGGCCCCGTCCTGGACTCCACCACCAAGAACATCACCAAGTCTCTGGCCTCTCTGTCTGAGATTCAGGAGAATGGCTTGGGCTTTGTTCTACGCGAGACCTACTCCAGAGAAAGCGTGTCCAGAACTATCAACCTTCCGGTCCGAGGACACACATTTCCCAGGCAGTCCAGAGGCTCAGACGCATCTCCATTCACCAGGCGGCCATCATACGATAGAAGCCAGTCATACAGACCTCCTGAGACCATCTACACACCTCCGTCGTCCCCCCCTCTCCGAACCCGTAACGACCGCAACGTTTTCTCCCGTCTTACAAGCAACCAGAGTCAGGGTTCTGCACTGGACAAGTCTGATGACAGCGACTCCTCTCTCTCGGAGGTCCTCAGGGGTGTGATCAGTCCTATGGCAGGGCTGAAGGGGGGCAGAACGGCTCCTCTGCAGTGTGTGGCTATGGCTGAGGGACACTCCAAACCTGTGCTCTGCCTTGATGCTACCGACGAGCTGCTTTTTACTGGATccaaagACCGCACATGCAAGATGTGGAACCTGGTGACTGGGCAGGAGATAGTGACACTGAGGGGACATCCCAACAACGTCGTGTCCGTCAAATACTGCAGCAGCTCTGGCCTGGTTTTTACTGTCTCCACGTCCTACATCAAAGTGTGGGACATCCGTGATTCTGCCAAGTGTGTGCGCACCTTCACATCCTCAGGTCAGGTAGTTTCAGGAGATGCCTGTGCTGGCACCACCACCCGCACAATCACCACAGCCCAGGGCGAATACCAGATCAACCAGATCGCCCTAAACCCATCCGGCTCCGTGCTCTATGCTGCAGCAGGGAACACGGTTCGAACCTGGGACCTCAACAGAATGCAGGCCTCGGGGAAGCTGACGGGCCACATCGGCTCAGTCATGTGTCTAACAGTGGGCTACTCTGGTGGGGGCAAAGACCAGGTCATCACCGGCTCTAAGGATCACTATGTGAAGGTGTTTGATGTCGCGGAAGGCATGCAGGGGAACATTGGTCCCGCTCACAACTTTGAGCCGCCTCACTACGACGGCATCGAGTGCCTGGCTGTGCACGGCGACGTGCTGTTCAGTGGCTCCCGTGACAACGGCATTAAGAAGTGGGATCTGGAGCAGCAGGAACTGATTCAGCCAATCCCAAACGCCCATAAAGACTGGGTGTGTGCGCTGGCCTGCGTGCCCGGGCGACCCATGCTGCTGAGTGCCTGCAGGGCGGGCATGTTGAAGGTCTGGAACGTGGACAACTTTACACCCATCGGAGAAATCAAGGGTCATGACAGTCCCATCAATGCCATCTGCACTAACTCCAAACAGATCTTTACTGCCTCCAGTGATTGTCGGGTGAAGTTGTGGAGTTATGTCCCGGGTCTCACTCCCTGCCTGCCCCGTCGTGTTCTGGCCATCAAGGGCCGAGCCACCAGCCTTCCCTGAGCTCCACTAACACCCTCCGCCTCTGCGCTCTGTGACAGGACTGTGAAGCTCTGGAACCTGAGGATCGCAAAGAAGAGGTGACAGCTTGACGACGTGAACGTTGGTCTATGTTCCTTTCACTGACCGCAAGGTGACTCAGCTTGTcctcagaggtcagaggtcagaggtcacagtcCGGAGCTCCAGTGCCACATGAAGGTCTCGTAAAGGAAGAATGTTCATGAGAAGATGAAGGCAATAGTGAATCTAAGGTGCCAACCATGTTGGTATTTTTGACTGCACACCAAATAATGAGATGGGTGTGTGTCTGCTCcatgtgtgtacatttacagaAAGTGTCCTTCTGTGCCAGTttgttttttgaagaaaaaaagtgtCACTTTAGATGTAGCTGCTgtccatttttgtttatttattatttcaagtTTAAAAACAGGCCAATATGAAGGCCTTGAGAAATCACTTCTGAGCCAAATAGTGGGGAAAAGCACTTTTCAGTTTTACCCCCTGGAGATCcatatgtttctgttttttgatTGACTGAATATCAGACTTTATCATAGCAAGTGTTCTACTGGAAGCAAGAAAGAGATTGATTCTTCTGTTACCATCTGGTGGAGGTTCTCTGGAGAGTCTGGATACAAACGGAGCTTGTTCCAAGACGTGACTGAGTAATAGTGCTGGCACACTCCCCAAACGCACCATCACCTTCCTCTGAGGTGTCTACTTAAGACTTTTACAAAATCTAATACGGACTTGGTGTCTTCTTAATCCCTCATCATCTTGAACACGCTCAAGAAAATTTTGTACAGCTTCCTCTCCTTTTCAAACAAGTGTTTCCTCCTGTGCTGTGATGTTTCCATGTTCTACCTCaggtttaaatatgttttttgggAAGCCCTGTCAGCTGTTTGCGTTTGGGGCTCTAGCTCACGCCTATCTCCCAGACTTCTTATTACTGGTCTGTGAATATAGTGCTCTCTGAGCTCTGCAAGCCCCTTATCCACACTCTGCTGAGCGGACACTTTTAGAGGCTGGCTTCAATAAGCTCGGGCCAGCAGAGACCCGGAGTGTGCAATAAAACCGACAGTTTGCTCTAATGAAGGCTCTAGTGCTTAAGGAGGCAGAATGAGACTTTCCTTTAGTGGGTTTAGAAGGACCTAATCTCCTGCTGAGAGTTAGTTCTtgatcagttcagttcagtctGACCCAGCTGAGTGAGTTTGGACTGTTTCTAATGCTGGAAATGGCAGATAGACTCACCATGGAATCACAGTGGTGGTGTGCTGTTTAACAGAACGTAATGTAACAGAAGTCATTAATGTCAATCACCGTATCTGTGAAAATATTGCGCAGctttgtagtgcactattaGGGGATTACATGTAATAGTTAATAGGATAGGAGTTAGCAGCAACTTTTCAATTGTGAATACTTGCTAGATTTTTGCACATAACCTGGTTAGTTCAAGTAAAATGCATAAAGTCTCACTGGGAATTtttcttgaattaaaaaaaaaaatgtaaacactgaTATGCTCTAAAACAGTGGTTCTCTAAGTGGGTTCTCCAGGGGTCTGTAAAGAATAGTCTGGGGGTCCatgattttgtaaattttggtaCAGCGGTAGAAATCATGCCCCactattattaaagttattactGAGTTCTTGTAGTTTTTAGTTGAATTGACTGGTTACTTAAACTGAGCGAGTTTAATCCAGACCTCAATAACCcaaaagttcagaaataaaaatctctatAGCGCCAATAAATAGGcagaatattattatacacttttatacaatGAGTCAAATATTAGAATAGTTGgatgatgttcataaaataaatcggTACTGAGTGCGTCCATGGAATTTGTTTTACAGGTAAAGAGGTCTGAGACTGCAAAAACATTGATAACCCCTGATCTACAATCCCACAGACCTATTTGCTCCcccaaaacactgaaatataaagCATAAACCAAACAGTGGTGGAACAtcaaatactttaaaaaaaagcccttTGGGCCAGACACAAGTTGTGACTACATCTGGAATTATCTCATAGGATCCATCCCAATTTCCTTTTCCCACTGCATCTCTGTAAAATATGCAGAGAGCAGTGTTGAGAAGTAGGTCGACTTCAGAGCTGtgttttttctgctcaccttttgaaaaaaaacagttgctgtTTATTAAACGAAACAGAAAACTGGCCCGCTGGTGCCAGAGGAGCCGACACGCCTGATGGGGGTATGTGGGCGATGGCAGGTTTCATCTTGGCACAACACTGGTATGCACTGAGTATTTTTAGAGCATCAATCATCATCTTCCAGGGCTGCACTCTTCTCCCAGCCCCCAGATTTACtgtcttttttaatgaaacatattTATCACCCTAATCTTTTCTGGGCGGCCCCTGGCGCATCTATATCTGTAGTAGCAGCTGTCGGTGGGTGCTCGGCTGTCAGGCCCAAGCTCTGATTTCCAGCTGTGAGGGATGGGTTTGCTGTGCTAAAAGCCCCGCAGCACAGATGATGGCGCATCGAGCTGTGTTTAAGGAGCCGGTGTCCCATTAAAACTgtgagctgattttttttcccccctcaatTTTTCCTGTATATTTAATGTGATAATGTTCAAGCAAGGAATGGAGGATTTTGTCTTAATGATGCCATCGCGCTATGATATGTATACCACTGTTTTCTTATAAAAATGTGAAGCTGCTCAACTCAATGTTTTGCATGAGATTATagtaccacagcgctgttaaattcttgattctgattggttgattcattttctagaacagaagctctgactgtagttccggctgcaaggtttatattaatgcgctc

Function

GO: NA

KEGG:

id description
K24185 KIF21; kinesin family member 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU359549 lncRNA upstream 86406 6498084 ~ 6502636 (+) True tmem167b
TU359550 lncRNA upstream 86718 6498084 ~ 6502324 (+) False tmem167b
TU359315 lncRNA upstream 237946 6350192 ~ 6351096 (+) True G303181
TU359310 lncRNA upstream 295293 6200446 ~ 6293749 (+) True LOC113539422
TU359311 lncRNA upstream 295293 6200446 ~ 6293749 (+) False LOC113539422
TU359680 lncRNA downstream 140289 6791318 ~ 6793226 (+) True G303437
TU359917 lncRNA downstream 216689 6867718 ~ 6870772 (+) True G303645
TU359932 lncRNA downstream 247461 6898490 ~ 6900530 (+) True G303658
TU360012 lncRNA downstream 343816 6994845 ~ 7001112 (+) True LOC113539683
XR_003403952.2 lncRNA downstream 345044 6996073 ~ 7001081 (+) False LOC113539683
XM_026935595.2 mRNA upstream 18069 6536593 ~ 6570973 (+) True srpk1b
XM_026935596.2 mRNA upstream 18069 6537712 ~ 6570973 (+) False srpk1b
XM_026935594.2 mRNA upstream 18069 6547287 ~ 6570973 (+) False srpk1b
XM_034314367.1 mRNA upstream 18069 6551315 ~ 6570973 (+) False srpk1b
XM_034314368.1 mRNA upstream 18069 6551315 ~ 6570973 (+) False srpk1b
XM_026935734.2 mRNA downstream 12939 6663968 ~ 6779358 (+) True cpne5b
XM_026935735.2 mRNA downstream 12939 6663968 ~ 6779358 (+) False cpne5b
XM_026935532.2 mRNA downstream 231359 6882388 ~ 6885522 (+) True LOC113539624
XM_034314086.1 mRNA downstream 252310 6903339 ~ 6917985 (+) False zgc:113307
XM_026935647.2 mRNA downstream 262221 6913250 ~ 6917985 (+) True zgc:113307
TU358141 other upstream 2119868 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 5090555 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 5091415 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 5724154 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 5744231 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 13045 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 1850609 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 1850609 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 3861642 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 4113245 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile