RNA id: XM_026935338.2


Basic Information

Item Value
RNA id XM_026935338.2
length 5385
RNA type mRNA
GC content 0.41
exon number 16
gene id zc3h11a
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8673179 ~ 8683472 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGGGTTTTACTGGTTGTAGTcaggaattacaagttgcatcTTCGCCTCGAAAGGAAAAGTGGGTGGTTACTGCTGAGGCTGTTAGGTTTGTTCCGTGTGGTCGCCATTTTGTTCGTTTAAACCAGGCCCGGACCGTCGTCGACCAATGCTCTTATACGAAAACAGGTTTTAACAAGTCATATCCATATAAACTGGTAATTTCTACgttttatttgtgttaattaTGTATTTAAGTAAATGGTCTCGTACATTTGCTAGGTAGCTAGCGTTAACGTCGGTAATTGTCTTGAGTCGAGCAAATGTTAGCTGACTTAGCTCATATAACTAGCTAGCGTTGTGAGAATCTGAATCTCAGTGAAATCATGATAGTATTACGTGAAATCAAGTCATGTCATACTTCGGGACTTTCTATCAATTATCAGTAGACTGAAATGGTAGGAAATATGAGCTATCAGGCTCGTCACAGCAAGTAAGGTTGTCTTAACGTGCTTCGTTTTCATCGAAGCAAACTCGGCCTGTTGTGGAACGGTTCACTTTGTTAGCCATTTAGCTACTTAACATTTTATGTATGGCTTGTTGCTTTACCTATATTTTAGTAGCATGTTAGATCGAAttattcatttctattttaaagTAAACGTGGTGTGTGAAACAtgtttagttagctagctacagcGGTTACTCTGAGAAACTCGATGCATATCGTTGCTacatttgtcttgtttttttcaagTAGATCAAGTTAATCATGAGTAATCGACCAGGTCTTTCAGGTTTCATTTTATCATGTCATGTTATGATAATGTTTAATGCAGATTACAGAGGgtttaaagaaaatgtcatgCACATGACTTCAAAGGCAAAACCTTTTACAATAGAACAAGAGGAGTCGAAATCAAGTTGGGAAATGgtctatgaaaaaaaatctaattttaaaacTTGATGCTTATTCCGTGTTATTAAAACTGACTATTTGTCCAACACCATAATGGTGTGCTAAATGAAAGCTAAATTGCTAGATATGCTTGAATCAGTGCTTGCTTCAGTATATGCTGATGTACAATGTCTGTTTCAGGTTCTGAAAAGCTAAAACTCAACTTGCCAAAATGTGTAATTTCTTTGTGATCATGGCAGTTGAAAGTATActcaaataacattttattaactcAATTCCTCACTCATTTATCCAGTATATGAAGTATGTGGGGAgtgttttgctttctttttaaagGATATACAGGAATTTCTTCTACAGCCCTGGCGATAACTGGATTTGGATAGAGGCCAACTAATGGAGAAAAATCTTCTCTGAAGATTGGCACTTTTTATCCCCACACTcagatcatttttttcccccttcacattggatgattttttatttctcttttgaaAATTCAACTTTTGCCCAATTTAAATGTTCTCACCTATCTTCAAATTGCCACAACGGGTGTGAAGAGATAGAAGACCCCACCCTTCCCGTTCCTACACACACATCCCTTTCAAGATTTTCATTCCCACTCTCCCTGGCTCTCACTTCCGACATTTAGCCCGAAGATTTTTGTGCCCTCACCAAACAATTGTTTTTTATTGAGGAATAGAAAAGGACTTTTCACCACCGTTTTACTTGTTACAAAGCAGTCTAAGACGAGCACGTTTCTCAGTGACGAAAGCCTCTCTCGCCCTGTTCACTCTTAACTCATCGGTCAAGTGTTCCTTCAGGACCGTTACAGCTTGGGAGACAACCCAGAAGAAGTACACCTGGTGGAGACATCTTATCCACTGCAGAGAAACTCCAGAGGGCCTTGTAGCAGCACTTGAAGAGTTCCTGACCAGCAAGATTATTCCCTGGCCATGACCAGCATGAGCAATAAGGGAGATGATTGCTATTTCTACTATTATTCAACATGCACTAAGGGTGATACTTGCCCTTTCCGACATTGTGAGGCTGCCATGGGTAATGAGACTGTCTGCAGTCTTTGGCAGGAGAACCGTTGCTTTCGCAATGTATGCAAATTCCGTCACATGGATATAAAGAAAAACCGCAAAGAAATCCCTTGTTACTGGGAAAATCAGCCAGGCGGATGCCAAAAGTTTCATTGTGCTTTTCACCATGAGAAGCCACGTTTCATTGATGGCCTTTTTGTTGCCGCAGACAAAGGGCCTGTGGTGaggaaggaaaaagaggaagaaactCCACAGGACGACCATGTTTTGTCTGCTTCTGCCAACATTTCCAACACCACCAACCCACAACTCAGAGGGGTCATCAAGGTAGAGACTCAAGAGAGTGTCCCCAGTCCCACACACCCACCAGTAGTCATTAATCCTGTGGACGATGAGGATGACGAAGATGATCAGTTTTCTGAAGAGGGAGAGGAAGCTTCTGGTGTCTCTCCAAAGAAACTGCTGAGCTCTAGTAAAGATGAGTCGCTGAATTTTGGTATCAAAACACTAGAAGAGATCAGGTTGGGGAAAGCTCTGAAGGCCAGTCTAAACAGACCAGGCCCTGATGAGTTCACCTCGACAAAACGGCATAGCAGCGGAACTGGCACAGAGAAGGAAACCATTCAATCTGTCACACAGGCAGCAGTTGTCACTACCAGTGAGTCTCCTGCTTTGGAGGACTCCGGAAAAAGGAAAATTACTGACAGGcttggaaaaagatctgatgaAGACCTGCTTGTGGAAGGTGGTCTACGGCTGAAAGGGTCCCTTGCTAAGCGTCTTGGTGGATTTGTTGACTCCACTGAGAATAAAATCAGTATGCCTCCCCAGAAAGTTAAAACTCTGAGACCAGTGCGTGAAAGACTTGGAATAACTCCTGATATCACTGCACCCAAGTCACCAAACAGTGAGCCAAAGTCTTCTGGTGAGATCCGGATCAAAACTCTTGAGGAGATTCGTCAGGAAAAGGCTGCTAAATCTCAGAGGCAGTGCAAAAGTGTTAGAGTTGAGGTCCCTACAAATGCATTAAATTCCaccaaaaaagtaaataagcCTGTCACTGCGCCTAGTGTAAAGACTTTCTCAGAGATCCTGCGTGAGAAGAAACTCCAGGAGACAAAGGTGGTGCCTCAGCAAGGTAGTACTGAGAAAACCGAGGGCCCTGCAAATGCTGGAGTGATCAAACTGACTGCCCAAGCAGCAGAGATCAGAGTGAAGACGCTTGAAGAGATTCGTAAAGAAAAAGCTGCCAGAATGCAAGCAAAGACACAGGACACAACAAATGATGATGCACCTAGTTCAAGCGATGCAGTCCCAAAAAGACGAATTCTTTGCATTGGCAAGACTGGATcagCTATCAACATCAGATCTCAAAAAGTGCACAGTTCTGAGAAGCCGGATTGCATTGAAGAGTCCACTGTAACCAATGGAAAGAGTGACACCTCCATTCAGGATGTAACGGTAAAGAGCTTTGAGGAAATCATGCGAGAGAAAAGACTTCGCAAGCAACAGGAGCAGGCTGCATCTACTGTTGAGCCAGAGCAAGCTGCCCAGAAACCAATCCCAGTACTTTGTGAAAAGAAGCCTCCTGCTGTCATCAGACCAGGAATAACCAACCAAGCAAATTCGTCCATACAACAAGGCATTAGTCATCAGGCCTCCTCTCCTGTCCCTTCTGTGGTACCCCAGAGGAAGTCTCCAGAGATGCAGAACAAGGAGAACTCTCTTACCATAAGTCCTAAGAAATCCAAGTCATCCTCTTCAATGGCACCTCCTGTGCAAGTGTCAGAGATGGCAGATTCTTTAGGCCAGCATTCACAGGAGCCACATTGGGAGAACACTCAAGCAGTCACCAAGATGCCCCCAAGCAAAGCAGCTGAATTAAAAGTGAGGCCAAAACTGAATGTAAAGCCATCAGTGATGAAGCCAGCTGCTCAGGTGAAACCTGGCCCAAAAAGGAAAGCTGCAGGTATCCATTGCTCTGCTGTCGCTGCAGTGAAACCTCTTAATGCTGCCCCTGCTCCTGATGTTGAACCACCTTGCAAGCGGACTCAGTTGTCTGCACCGTCCTGCAGTTTAGAAGTTGAAGCCAGGGCGCAACAGGTGTCACCTCCTGCTGAGCAGTGCTCACCTGAGCCCCTTTCTGTTCCACAAAGCCCCATCATTAAGACTCCCACCCAAACTCGGCCACGTCGGGCAAGTTTGGCTTCTGCACGTGGCACTACTCCTGCAGGAAACTCCTCCACAATGGACGACTTTGACGACCTGCTGGATGAATTTACTGATGACAGACTGGAGGATGAGATTGAACTGGACCCTGGCAAAGGCGAGGATGACCTCTTGTTGGAGCTTTCTGAGATGATTGACAGCTAAGCTTAATTTCAGGGAATACTTGTTCTCATTCACTGAATTATGTCAAGCCATTTGTCCTTTAAAACATTCTTGACTTGTTGAGCTGAAGCTTTCTTTgtcttaaacaaacaaacaaacaaaaaaaaaaaactattttttgaCATGGATCaaagtatgttttaattttctttactCCTGAGTAAAGGTTAGTTCATTTAGTTTTCTGTTCTATTTTtgactatttaaatgttttatatattgcaTTTCTGCATATATTCAGTAAGATTCACTTCAATGGCTGTTGTAAAGATCTTAAAGAAATTCATTAAgccattaaataataatatgctgTTCAATTGTTATTTgatcatactgtacattttatagCTTGTTTATGGTATCTGATTTGTTGAGTAGTACAAAGAATGTGCAGCTAATCATGTAATATTAATGCAGAAAGTGTTTATTTGTATACTGTGTATGCTTTGGAGAACTAAATGATGATGGAGGGCCAGGAAGGCAAGTGATGTCTTAATCAGTGCTCTCATTCATGTGAATTCATTTCCTATTTGAAATTGGATTTGCTAAATGTTTATTGACTGTGGATGGATTATAttcttttaatgaaatgttttgtgtgtcttGAGTTTATGAATGGATGGTATAGATTTGTTTTCAGGATTTGGACATTTGTCAGACCTACTATATCTTGTTGCACGTATTTTGCTCTAGATTAGGCTTATGTTTGAACCATTATCCATATTTCCTGTCCAGGTAATTGATGAGAAATTGTGTTCCCCTTTCAGTCTCttgatgtaaatgtttttactgtttgTAAAGGTTCTCAGGGACTATTTTAGCTTTCCAAATATTTTTACCTGTAGTGGATTTAAGTACTTATTCAGACAGAGGTCCTTGTCTCTGTACTGTTAGTAGTTAACTACTTGACCTCAAGATGACTGTTTTAACCTAGGTTTTCAAACAGGATAATATATTTGACATCTACATCATGGCTGGTTTAATTGCAGCTTTGTTTAACAAATGGATATagctttattaaaacatttttataattaattttctttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580236.1 lncRNA upstream 1496 8669638 ~ 8671697 (+) True LOC117599908
TU360834 lncRNA upstream 192604 8480377 ~ 8480589 (+) True G304453
TU360831 lncRNA upstream 200879 8472084 ~ 8472314 (+) True G304450
TU360730 lncRNA upstream 271060 8394722 ~ 8402133 (+) True G304367
TU360968 lncRNA downstream 6021 8689493 ~ 8689709 (+) True G304566
TU360977 lncRNA downstream 34752 8718224 ~ 8718463 (+) True G304575
TU361008 lncRNA downstream 73126 8756598 ~ 8761643 (+) True G304599
TU361011 lncRNA downstream 73126 8756598 ~ 8758550 (+) False G304599
TU361012 lncRNA downstream 78459 8761931 ~ 8762253 (+) True G304600
XM_026935778.2 mRNA upstream 13364 8656659 ~ 8659829 (+) True chia.2
XM_026935779.2 mRNA upstream 13364 8657173 ~ 8659829 (+) False chia.2
XM_026935229.2 mRNA upstream 36383 8632261 ~ 8636810 (+) True chia.1
XM_026935688.2 mRNA upstream 42991 8587864 ~ 8630202 (+) True cntn2
XM_034314101.1 mRNA upstream 111491 8501641 ~ 8561702 (+) False nfasca
XM_026935365.2 mRNA downstream 10205 8693677 ~ 8700644 (+) True maf1a
XM_026935665.2 mRNA downstream 130109 8813581 ~ 8819844 (+) True pnp4a
XM_034314007.1 mRNA downstream 185547 8869019 ~ 8879676 (+) True rem1
XM_034314005.1 mRNA downstream 186197 8869669 ~ 8879676 (+) False rem1
XM_034314006.1 mRNA downstream 186197 8869669 ~ 8879676 (+) False rem1
XR_004580199.1 other upstream 114282 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 114405 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 1893835 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4204019 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7174706 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1829199 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 2080802 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 2085235 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 2085235 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 2428267 11111739 ~ 11112518 (+) True G305727

Expression Profile