RNA id: XM_034314414.1


Basic Information

Item Value
RNA id XM_034314414.1
length 2227
RNA type mRNA
GC content 0.47
exon number 14
gene id pfkfb4a
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2845374 ~ 2881640 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTGGGATTCGTTCGAGCCTGGGAATCGATTCTTCAGAAAGACTCGCTTTAAAAGAGTCGAACACAAAAAAGAACCGAATCAGAGTCATCACTACACGTTCACACTCACGAACGCGAAGGACGGACGGTGTAAAAGCAGGGGGAAGATGAGGGGTGCTGCCAAgtccaaaaacacaccaaattCTGACAGGGCGGtATGCATGACCAACTGTCCCACTGTCATCGTCACGGTCGGCCTACCAGCCCGGGGCAAGACCTACATCTCCAAGAAACTCACCCGCTACCTCAACTGGATTGGCGTGCCAACGAAAGAATTTAACGTAGGGCAGTACAGACGAGAATGTGTGAAGATCTACAAATCGTTCGAGTTCTTCCGTCCGGACAACGAGGAGGGGCTCAAAATCAGAAAGCAGTGTGCATTGGCAGCTCTTAACGATGTGAATCAGTATCTCACCGAGGAGGGGGGGCAAGTGGCGGTATTTGATGCCACAAATACTacgagagagaggagagagaccaTCATTCGATTTGCtgaacaaaatggatttaaggttTTCTTCGTTGAGTCTGTATGTGAAGATCCTGACGTTATTGCAGAAAACATCGTCCAAGTGAAACTCGGCAGCCCAGACTACACAGACTGTAACACCGAGCAGGCTGTGGAGGACTTCATGAAGAGGATAAAATGCTACGAGAACTCCTACCAGCCTCTGGACGAGGTCTTAGACAGAGAGTTGTCCTTCATAAAGATCATCGACGTGGGTCGGCGGTACCTGGTGAACCGAGTCCAGGATCACATCCAGAGCCGAATCGTGTATTACCTCATGAACATCCACATCACGCCACGCTCCATCTACCTGTGCCGGCACGGAGAGAGTGACCTCAACGTTAACGGTCGAATCGGAGGCGACTCGGGTCTCACGGTCCGGGGAAAGGAGTTTGCTCGCTACTTGGGACAGTTCATCCGCTCGCAGAACATCAGCGATCTGAAGGTGTGGACGAGTCAGATGAAGAGAACGATTCAGACTGCCGAGGGTCTGGGCGTGCCATACGAGCAGTGGAAGGCTCTCAATGAGATTGATGCTggtgtgtgtgaggagctgATGTACGAGGAGATTCAGCAGCGGTATCCTCTGGAGTTTGCGATGCGTGACCAGGACAAATACCGGTACCGATATCCCAAAGGAGAGTCTTATGAAGATCTGGTGCAGCGGCTCGAGCCCGTCATCATGGAGCTGGAGCGGCAGGAGAACGTCTTGGTCATCTGCCACCAGGCGGTCATGCGCTGCCTGCTGGCCTACTTCCTGGATAAAACAGCGGAGGAGCTGCCGTACCTGAAGTGCCCGCTGCACACAGTGCTGAAGCTCACGCCGGTGGCTTACGGCTGCAAAGTGGAGTCCATCTACCTGAAGGTGGAAGcggtgaacacacacagggaaagaccagagAATGTAGATGTGACGCGGATGCCAGAGGAGGCCTTGCAAACAGTGCCAGCTCATCAGTGACACtccgcacacaaacacacacacgcacacactcccTGTGGGATAAtcaatattcaaaaaaaaaaaaatcatttgattaTTCTTTAGATTAGTGATTTGGAGCCATAATCGCTCCTTCTGTGACCTGACACTAATCAATCTTATCATCTTAACGAACTTTATGCCAGCATGTGCATGACTGGCAGCTATGTTTACAACCAGACCATCGTCTGGAACACGTTTAATTAATGAAGCTAAATGTAAGAATGTTAAATAACTTACTATGTTTACGTAAAATTACCCTACAGTATGTGCTGCGCAATAATATATTTAACCACTGAGAATGAAAAGCAGTGATTAGCATTGCTCTAATGCACAAGTAAGTTTAACTTCATGAGCTAAACTGCCTTTGCACCTTAACACTCCCATTGGTTTGATTTTTCTAACATTGTGTTTTGTGTCGATTTATGTGGAATGTTGTccttctgaggaaaaaaaaaaaaaagtgtacatgtTGAGAGTATTAGCTTTACCGTGGcacaaatcacattttaatttgcCAACAGAGAGCCAGACTGAAtcggctttttaaaaaaatgctgtgatTTTACTTTGAAACGTGAAGATCTCCATACTGATGGGGAAGTGGATTTAGATTtgcatttagattttatttaaaatggtatTTATACAATGATGATGTCTAAAtgaaatgctaataaaatatgtttaatagaCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU356715 lncRNA upstream 122689 2736478 ~ 2736908 (+) True G300843
TU356713 lncRNA upstream 122736 2736478 ~ 2736861 (+) False G300843
TU356712 lncRNA upstream 123590 2735036 ~ 2736007 (+) True G300842
TU356710 lncRNA upstream 129990 2728484 ~ 2729607 (+) True G300841
TU356709 lncRNA upstream 132086 2727304 ~ 2727511 (+) True G300840
TU356639 lncRNA downstream 28157 2906708 ~ 2908054 (+) True G300775
XR_003403928.2 lncRNA downstream 150389 3028940 ~ 3060846 (+) True LOC113539486
TU357449 lncRNA downstream 574120 3452671 ~ 3453505 (+) True G301487
TU357469 lncRNA downstream 643241 3521792 ~ 3530359 (+) True G301506
TU357636 lncRNA downstream 1032089 3910640 ~ 3912283 (+) False LOC113539463
XM_026935705.2 mRNA upstream 7339 2827888 ~ 2852258 (+) False mapkapk3
XM_026935704.2 mRNA upstream 7339 2827889 ~ 2852258 (+) True mapkapk3
XM_034314451.1 mRNA upstream 32535 2786885 ~ 2827062 (+) True dnah1
XM_026935236.2 mRNA upstream 93192 2763662 ~ 2766405 (+) True chchd4a
XM_026935604.2 mRNA upstream 98430 2754776 ~ 2761167 (+) True ldlrad2
XM_026935163.2 mRNA downstream 8173 2886724 ~ 2893259 (+) True tada3l
XM_026935730.2 mRNA downstream 16287 2894838 ~ 2903607 (+) True hmces
XM_026935728.2 mRNA downstream 16443 2894994 ~ 2903607 (+) False hmces
XM_026935731.2 mRNA downstream 16444 2894995 ~ 2903607 (+) False hmces
XM_026935729.2 mRNA downstream 16464 2895015 ~ 2903607 (+) False hmces
TU355411 other upstream 1361110 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 1361970 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 1994709 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 2014786 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 2338710 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 1588526 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 3785523 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 5623087 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 5623087 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 7634120 10512671 ~ 10513270 (+) True G305515

Expression Profile