RNA id: XM_026935398.2


Basic Information

Item Value
RNA id XM_026935398.2
length 5810
RNA type mRNA
GC content 0.49
exon number 18
gene id lrig1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 3519749 ~ 3559647 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTTTACGAGTCCGAGGCTTCCAACGTGGGGCGAGAGTGCGTCCTGCGAAAAAGAAAAGGGGGAAAGTAAAGACAGAtaggggaggaaaaaagagatcTGCCCTTAAGATCAGAAGTGAAAGGAGAAGCGTTAAATAATCGGATCGCTTGgattttgtctgttttgatAAGATCCTGCTGATAAGAAGCTTCACCGGTTTCTACAGTCGCAGAGCCTGGAAAGTTACAGCAGCTTTTCCACCCAGACGcgcttgttgttgttgttgttgttgtttattttaaacatatttgcaccaaacacagcagagagagggagagagagagagagaagagagagagagagagagagtatttcGGGAAAGGAAAACAAGTTGTTTAATCGTCCAGTGAAGACTGCAGCCTGAACATGTCTCCATGGAGTCCGAGCACAAGATTTCTTCCAGTTTTCTTCTGGACGCACGTTACAGCGACGTCAGCGACAAAATAACCCGGATTTCTGCCCGCTTCTGACATTCTGTGTTTGTgggatcttttttttaaaaccttttcttCTAACGATTTATTCGGATCGGATCCAAAATAGTCAATCCAACTGCTCGGgggcgcgcgcacacacacacacacacacacacacacacatctcattcTCAACCTTTTAAGGACAACAGCTTTGGACTTGCTCTCCGCTTTGGCTTTGGTGCCGCAAAACTTTCTTGAGTTGTTTGCaatcttttaacattttaaccttttgtttcactttagtttttgattttatttaaaacacactctcacacacacacacacactaaactttGTGCGCGGACTTGAAGGTGTGAAACCAGGAcctgtgtaatatttttatttcttgcttcccataaaataacacaacacacaacacattcatGATGCCTTTTCCGCATCCAGACGACGCAACGGaggacaaataataaataaaaagcaaccTGACTCGGAATTGTGGAGAGATTAGATCACAACTGATCCGCCGATAGAAGTGGATACAAAATGGCGGCGGCTCTGGGACACATTtcatattatgttttttattcccTCGTAACCCTGGAACTGTTCATCACTCACGGCGCGAGCTCGGATTTGCCGTGTTCACAAAACTGCACGTGCACTTCAGACACGGCCGACTGCAGCCACCGGAAATTAACCGATATTCCGAAAGATTTACCGGATCGGACCGTCTATCTaAACCTGAGCCACAACATGCTGACGGCAGTCGATACGGACATCCTCTCCAATCTGCCCAACCTTAAAGAAGTGAGACTGGACCACAATGAGCTGACATCAATCCCCGAGTTTGGCAGCGCCTCGCCAGCCATCGTCACTCTCCATCTGCACCATAATAAGATTAGCAGTGTGCAGGGCAGCCGTCTCCGAAACCTCACCCACCTGGAGACTCTGGATCTGAGTAATAATGACATCATCGATGTGAGAGAACACTGCTTCCCCCGTGGCCTCCGTGTCCGAGAGCTgtCGCTCAGCGGTAATAAAATTGTACACCTGGAGTTTGGTGCGTTCAGGAACCTGAACGACACTCTGCAGGTCCTGAGGCTCAGCAGGAACCGGCTCACCCAGCTGCCTGTCAAAGGCCTCGAGCTTCCCAGACTAACGCAGCTGGACCTGAGCAGGAACCGGCTGCGCTTGATCGAAGGCCTGACCTTCCAGGGTCTCTCCAGCCTGGAGGTGTTGAAGCTCCAGAGGAACAACATCAGCAAACTCACAGATGGAGCGTTCTTCGGTCTTGCACGCATGAGAACCCTCCATTTGGACTATAACAGTCTGAAAGAGGTGAACAGTGGCTCTCTGTACGGCCTCCAGTCTTTGCTACACCTCCATCTGTCCAACAACTCCATCTCAAGCTTCAACCCTGAGGGATGGCGGTTCTGCGAGAGGCTGCGAGAGCtgCATCTGGGCCATAACAACTTGACGAAGCTGGCCGAGGGCAGTTTTGTTAAGTTAGCCAACTTACAGACTCTTCAGCTGAGCCACAACTCTATCAGCTATATAGCAGAGGGAGCTTTCAGAGGTCTCAGCTCCTTACGCGTACTgGAGCTTGACCACAATGACATTTCTGGAACAATCGAGGACACCAGCGGTGCCTTTACAGGCCTGAAGAAACTCCGGAagctGACGCTGTTCGGAAACAGGATCAAGTCTGTGGCCAAGAAAGCCTTCTCAGGCCTGGAAGCCCTCGAGCACCTAAACCTGGGCGGAAATGCCATCCTCTCCATTCTACCAGACGCCTTCAACAATATGAAGAACCTCCGCACCCTGGAGATCTTGAGTGATAGTTTCCTGTGCGATTGCCAGCTGCACTGGTTTCCTGAGTGGGTGGTGGCGCGAGAGCTACAGGCTGGCGTCCACGCCACGTGCGCACACCCTGAGAGCCTGAAGGGCACCAGCATCTTCCAGGCTCCAGCACAGAGCTTCGTTTGTGACGACCTGCCCAAACCTCAGATCACGGTTCACCCCACATCCACGGCTGGTGTGTTAGGGAAAGACGTGCGTTTAACGTGCATGGCGGTAAGCAGCAGCAGCTCACCCATGACCTTCACATGGCGGAAAGACCAGGAGCCACTGCCTCAAGCCCACGTGGAGAATTTTGCCCACTCCACCGCCAGAGACGGAGCAGGAATCATGGAGTACACAACCGTCCTCCATCTGCGCAATGTCAAGTTTGAGGATGAGGGCCGCTACCAGTGCGTCATCTCCAATCACTTCGGCTCCACCTACTCCAACAAGGCGCGCCTCAGCATCAGTgtactgccTTCGTTTGTGAAGACCCCACGTGACCTCACCATCCGGGCTGGCGCGAAGGCTCGTCTGGAGTGTGCGGCAAAAGGTTATCCACCTCCACAGGTTGCTTGGCAGAAAGACGGTGGCACAGATTTCCCGGCAGCCCGTGAGCGGCGCATGGAGGTGATGCCCGACGATGATGTGTTCTTCATAATGCACGTGAAGCCCGAGGACATGGGTGTGTACAGCTGCACAGCCAAAAACACAGCAGGCATGATCTCCGCCAATGTCACGCTCACCGTGCTGGAAATGCCCCATCTGCTGCAGGGGATGGAGGACCGCAGTGTGGTGCTGGGTGAGGCGGTGGCGCTGCAGTGTAAGGCCGTAGGTAGCCCTCCTCCACGTATCTCATGGCTGCGTGGTGGCGAGCCGCTGCAGCCCAGCGAGCGCCACCACTTCACCCACGCCAACCAGCTTTTGGTGATCAGCAGCACCACACTGGAGGACGCTGGCCGCTACACTTGTGTCATGTCCAACCCTCTGGGCACCGAGCGCGCCCAGTGCAGCTTGACCGTGATCCAGCGTCCCGGTGCCAACTGCCACGTGAACACCAGCTCTGGGGCCGTCACCGTAGGCATTGTCGTGATCGCCGTGGTGACGAGTGTCGTGGCGACCTCTTTGGTGTGGGTGTGCATCATCTACCAGACGAGGAAGAAGAGCGAGGAGTGCAGCGTCAACACGGATGAGACCATCGTTCCTCCTGATGTCCCAAGCTACCTGTCCTCGCAGGGGACACTATCTGAGAGGCAGGACGTGTGCATAAGAGTAGAGTCCAGCGGAGGATCCCAGCCAATtggccacacacacagcaacgGAGGTTTTGATGTTCCAGTCCTGTGTACTGACTGCAtggaaaacagcagcagttacTCCAGGCCATCAGACTACTTCTGCCAGGGCCTTACGCCTCCTGCAGGCATGGAGTACCAGCAGATGCACCCTCCATCGACCTTCACTAGCCATAAGATGGGTGAGGGGCACTGTAACGGCACGCCCAACGGAGTCAGGAGGGAGGTGACGCCGACGTCGCAGAAGAAACACGGAGATAGAAAAGtttcaggaTCTCCTGCCAGCAGGACGGGAACGTCATCTCCGAGCGAGAGCCACCATCGGCCAGTAAAGCCGACCTCGATTCCCTCCACCTGCACGGACGCTGAGCTCACAAAGACTCTATTACCCAATGGCCACACACAGTCGAGTGAGACCGCCCCCCTCAGGCCGGCTAGTGACTAGCACCTCGTGGAATACCAAGCGAAGACTTTCGTATTGCTATTTTTGTATCCTGTTTGCACTGTGAACTGCTACCTCACACCGAGGGGCGCACATGGAGCTCGTCCTGCATCTGATCGCAGAGACTAGGCGTCCGGGTTTGAAGGCGAAGCTTGAACAGGGGGCCGTTCGTGTCCCAGTTCGAGCGTTACACCTGTATATAGTGTTTAAATCCTCCTCAGGGAGGCTTCGTTCAccgctgcaaaaaaaaatgtgacttgCATTTGAAGCATGTTAATGTAGGGAATATTGTATGATACAACAGAGTGCTATAATGTTGGACTTTAAATTGTACATAAGAGTTTtcatatatatctatatctatattattattatataacttttACAGAAGAGTATTTGAATCTATTCTGTGCATGGTCCGATCAGAGTGATGctatttttcctctctttttatAAACCTCCCAGCCCTGGTGCCTTACAGCATGAACAAAGAATCTGCGAGTCTGTCGTGTGTCTCTCAGGACGAGACTCTTCTCTTTCgtgaaatggaaatgttttcctGCACTTGAAATTGAGATAAACACTATAATCTCCAGCTACGGCCTTATCATACGGTTCATATTTGTTGCTCTTGAATAAAAGAAACCGTTTAGGCCCAGTATGGTACAATAAGATCGAGGGTGGGTGAAGAAATGCAAATCAGCACTTTGGTAGTAATATTGTGAGATTTAACACCATTCTCAAGATTTAAATGTGTAGGAAGGATgaaattttcacactttttcactAGAGTAAATACTGAACTCAAACAGAAATGCTTAAGCAGCCTATTTCACAATTCCACAGGTGAGACCTACTAACTGTGGAGgttaaaactgtaattttcATCATTTGCACAGCCTTAAATCTGGGGGGAGCAAAAGAAAAGATTCAGCTCTTCCATTTGCTAAAGGTACCAAATGCAAGTAGTTAGCCAGTGGTACATATAAACTGTACTACTCTGGTTCATTTTTTAATTGACTACATTTTATAACACCATTGAGGGAAGCAATGTGAATGTGGACACctcagaagaaaagaaaaattactAAAATGTGTGCTAACAACAGAGCATTGTTAGAAATTTCTTAGCGCACGACAAAAGGGATGAAGATAAACTTTACTTACACAAGGAAAGGGCATCATTATGTGTTAGCTGGTGTTCAGGTGTTTTTTCAATGTCTACGCACAGGGAATGGCCAGTATCTTCAGTAAACACCATTAGATAATGCTACGTCAACGTTACTAAACGCCTCattagctaatgctaactctagccTCTTTAAACCAAATAATAGGTACTAAGCAAATAACTCAAATCTGTGAGGCTTTTTAAGCCTACccgttttgcttttttttttttttcctccccacaGAAGCCAAACTGAgggaataatttttttctgtaggagttagctagctatgttacaGCAATTCTGTCACTCTGTTACCTAACTAACTGGTTTACACAGCTAGATTTTAGCTAACCGGCTAACTCggaatgaagagaaaaaatcTTTGCTTCTTAATCTTCTCAGATATACAAAAAGGTTTTACCTGCTAATTTCCATTGCTCATGTGGCATAGCAGACTTCTTCACCTTCCTTTCAGATTAATTTATTGAAATGAACTCATACGGCTGTACATTTGCAATGCTGAAAATGTTGACGTGTGGCAAGTTGACATGTCTATTAAAATCACATTTGCTCTTTGA

Function

GO: NA

KEGG:

id description
K24610 LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU357449 lncRNA upstream 66244 3452671 ~ 3453505 (+) True G301487
XR_003403928.2 lncRNA upstream 458903 3028940 ~ 3060846 (+) True LOC113539486
TU356639 lncRNA upstream 611695 2906708 ~ 2908054 (+) True G300775
TU356715 lncRNA upstream 782841 2736478 ~ 2736908 (+) True G300843
TU356713 lncRNA upstream 782888 2736478 ~ 2736861 (+) False G300843
TU357636 lncRNA downstream 350993 3910640 ~ 3912283 (+) False LOC113539463
TU357807 lncRNA downstream 358683 3918330 ~ 3918531 (+) True G301792
TU357820 lncRNA downstream 373460 3933107 ~ 3933350 (+) True G301805
TU357867 lncRNA downstream 469362 4029009 ~ 4029270 (+) True G301852
TU357872 lncRNA downstream 483443 4043090 ~ 4043866 (+) True G301857
XM_026935483.2 mRNA upstream 134335 3288732 ~ 3385414 (+) True suclg2
XM_026935664.2 mRNA upstream 506057 2965364 ~ 3013692 (+) True tafa4b
XM_034314060.1 mRNA upstream 506057 2968502 ~ 3013692 (+) False tafa4b
XM_034314061.1 mRNA upstream 506057 2977729 ~ 3013692 (+) False tafa4b
XM_034314416.1 mRNA upstream 561044 2941857 ~ 2958705 (+) True eogt
XM_034314105.1 mRNA downstream 64246 3623893 ~ 3802333 (+) True magi1b
XM_034314480.1 mRNA downstream 242082 3801729 ~ 3806127 (+) True LOC117599926
XM_034314103.1 mRNA downstream 290914 3850561 ~ 3913086 (+) True LOC113539463
XM_034314104.1 mRNA downstream 290914 3850561 ~ 3913086 (+) False LOC113539463
XM_026935716.2 mRNA downstream 355939 3915586 ~ 4011768 (+) False prickle2b
TU355411 other upstream 2021262 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 2022122 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 2654861 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 2674938 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 2998862 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 907430 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 3104427 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 4941991 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 4941991 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 6953024 10512671 ~ 10513270 (+) True G305515

Expression Profile