RNA id: XM_026935408.2


Basic Information

Item Value
RNA id XM_026935408.2
length 5742
RNA type mRNA
GC content 0.49
exon number 17
gene id tmf1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2925133 ~ 2941266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGTGGACCGGAAGTAGAAGCGTCGCGACTCGACAGCTCTGGACTTGTGAGCTAACTCCAAAACAAAACGCTGCTCAGACGCTGGGCAGGATGTCGGAATGACGCCTCGTTGTTAAGTCTGATTCTGTATGACAGAGGATTTTGGCAGTAATTGGACCGAGGTGTGATGGCGAAAATCCGATTTTCACGAGTTTGTTAGTCGGCTAGCGGCCTAGCATGCTAACAGTGACGCGTTAGCCGCTTAGCTTAACGTGACAGTTTGCTGTAAGTTGAGCTGTGTGCGCGATAAGTGATGATGTGCTGTTAAATTAGATTTTCTGCTGCTAAGCTGCGAGTAAAATGAGTTGGTTCAACGCTTCTCAGTTGTCCAGTTTCGCTAAACAGGCTCTGAGCACCGCACAGAAATCCATCGACCGAGTTCTGGATATAAAAGAGGAGGATCAGTGGGGCGACGCCATCACACCTCGTGTAGACGATGGAGAGAGCAACCCAGTGTCCACAGGATGGGGGATGAACCAGTGGGATTCTCCTTCAGAGGAATGCCCGAAGACCCTCACGCCTTTGTCCGAGGCCATCACTAAGCCCGTCACTCGCACCGTGGTTGATGAAACCGAGAGTTTCTTCAGTGCCTTCTTGTCTCCTGGAGACGGGCAGCCGGTCAAGACGCCGGTGGTGTCAGTGGCGCCGACCAAATCCCACCGTCGGCCGCAGGAGAAATCGGAAAAAGAGAAGCAACCTCCTGCCAAGGATGACGTAGACTCTTCCACGCTTTCTCAGGAAGATCTGAGTAAACAAAGCAGTGTACAAGTAGCGGAGAGCCAGTCGGAGGAGGTGAAGCCACAAGAAGAAGTGTCTGTTCTGGAGTCTGTTCTGGAGGAAACAGAAGAAACAGAGGACACTGAGAGCAAAACGGAGACACAGGATTCCACTTCAAGTCCGCAAGTCCCACAAGTGGACATGCCTGCGGAGCCCAAATCTACAGAAAAAGTCAAGAGCAGTGGTTCTGCTGAGCTTAAGAGCCCGGGGAAAGACCCTCCCAAAGACATCATGTTGGAATCCAAAGATGCTAAAGCAGAAGACAGGCAGAGCGACACTCCGTCTCCTCCTGTGAGCGCCTTCTCCTCCGGTACCTCCACCACCAGTGACATCGAGGTGCTGGATCACGAGAGCGTCATCAGCGAGAGCTCGGCGAGCTCCAGGCAGGAGACGGCCGAGGTTAAAGCGGGGCTGCACCTCATGCAGGGCTCCTTCCAGCTCCTCTCCGCTTCGACGTGCAGCGATTTCCCGCGTCTGGACGACTACCCGAAGCTGATGGAGAGCTGCGGGTCCTCGTCTGACGCCTTCGAGCGCATCGACTCGTTCAGCGTGCACTCTCTGGACAGCCGCAGCGTCAGCGAAGTCAACTCAGACGACGAGATCCCCGGCAGCCGCACTCTGGCGTCTGTTACTGCCGGAACCAGCCCTCTTCCAGCTCTACCGGCACCGCAGACCAATCAGGAGCAGGAAGAGACGGAGGGAAGGACGACCGACTGCGTGAAGGACCAATTGGTAGACGAGATGGAGGAGAGCGGGCGTAGCGCAACTCCGGTGAACTCCGAACAGCCAGAAGAGCTGCCGGAGGAGGAGCAGGAATCCGGGTCACATGTCACGCTGTCTAATGAAAGAACTGAACCTGAAGAGTCACGTGACTCAGTGACATCACCCATAACCGAGGAGCAGAAAGGAGCCTCCACCTGCCAGCTCCTGGAACTACAGAAGaTCGTTGACGAGCTCACAGGCAGGCTGGAGAAACGAGAAGCTCAGCTGCTAGCTGTTAGCAAAGACAAGGCTCGTCTGGAGGAGGAGTGTGATAACCTCAAAGATGAGATGATCACTCTGAAGGAGGAGAGCTCCAGCGTGCAGTCTCTCAAAGACGAGTTCACACAGCGCATCGCCGACACCGAGAGGAAAGCGCAGCTCGCCTGCAAGGAGCGGGACATCGCCAAGAAGGAAATCAAAGGTCTTAGAGAAGAGCTGTCGACCCGGTTCAACTCCGCCGAAACCCTGGAGCTGATCAGAGAGAAGGAGGAACAGATCAAAGGCCTTCTAGAAGAGGGCGAGAAGCTGTCCaagcagcagctgcagcactCCAACATCATCAAGAAGCTCAGGGCCAAGGAGAAGGAGAGCGACGTGAAGATCGCCAAGCAGTCCAAGAAACTCAAAGAGCAAGAGGATGAACTCAAACAGCTGCAGGAGGTTCTAGATGCGaaggaggagctggagaagcagcacagagagagcaTTAAGAAGCTGAACTCTGCCGTGGAGCGTCAGGAGAAGGAACTGAGCAGGGTCCAGACTGAAAATGAGGAGGTGCACGAGAAGAACCGCAGCCTGCAGGCCGCCCTGGACGCCTCGTACAAggagcTTGCCGAGCTGCACAAGTCCAACGTTACGAAGGCCAGCGAGGCACAGGAGCTGGCTCTCAGCCGCGAGGTCCAGGCCAAGGAGGAGCTCAGCCTGGCATTGGACAAAGCCCAGGAAGAGGCCCGCCTTCAGCAGGAGGCACTGGCCAATCAGGTGGCAGATCTGAGGTTGGCTCTGCAGAGAGCCGAGCAGCAGCAGGCCAGGAAGGAGGACTACCTCCGAGAGGAGATCAGCGAGCTTCAGCAGAGGTTGCAGGGGGCGGAGACCAGAAACCAGGAACTAAGTCAGAGCGTCACCTCGGCGACGAGGCCCCTCCTCAGGCAGATTGAGAATCTGCAGTCTACTCTGGGATCTCAGACGGCATCCTGGGAAAAACTGGAGAAGAACATCTCGGACCGCTTAGCCGAGGCTCAGGCCCAGCTTGCTGTTGCGGTAGAGAAGGAGCGCTCCGTGACAGAGGAACTACATGCCGTCAAGGCTCAGCTGGCTTCTCTGGAGTCCCAGAATTCCTCACTGCGGCAGGAGAAGGGACGGCTGCAGGGTCAGCTGGACGTGGAGAAGACACGGCGTGAGAAGCTGGAGAATGACAGCAGCAGggagcgTGTTGAACTGGAGAATCTGAAAGGCGAGTACACTCGCGCTCTGGAAGAGGCCAAAAAGGAGAAGCTGCTGCTAACAAACCAGCTTGAGATGGAGAAAGTGAAGGTGGagcaggagaagaagaaatGCTACCTCGCACAAGAGGCCTTGAAGGAAAAGgagcGGAAGGCGCTGAGTGTATCACTGAGCGAGCCTCCTGCATCCTcaactccatctctctctcgctccagCTCCATCAGTGGGGTGGATCACAGCGGCATACACACCTCTCTGCTCTCCCACCAGGAGGACTCTCCTGATCACTCGTTCGCCTCCATGACCCTCGGCGGGAGCAGCCTGTACGAAGCGGCGCGTCTGAGCGGAGGCTCCAGCATCATCGAGAACCTGCAGTCACAGCTGAAACTGCGGGAGGGAGAAATCGCACAGCTCCAGGTGGAGATCTCAAATCTGGAGCGGACTCGCTCGGCGATGGCAGAAGAACTGGTGCGGCTGACTAATCAGAACGATGAGCTGGAGGCCAAAGTGAAGGAGATCCCCAGACTCAGAGTGCAGCTCAAGGACCTGGAGCAGAGACACAACACCATCCTGCAGATGTACGGAGAGAAAGCAGAAGAAGCCGAGGAGCTGCGGCTCGACCTGGAGGACGTCAAGAACATGTACAAGACCCAAATCGACGAGCTGCTCAAGAACCAGAAATAACCTCTCTGGTTCTCTCGTTTtcttcgcacacacacacacacatacacatacacacacacacacggtcttGCTGACGGACTTCAAAGTGCATTTACTGTAAACAGACAAACTCGCTTATAGTGCAGGAAAGCAGAAGCTTCATGGTGTGCAGAAGACTCATGCTTGTTCTGTGaatatgtacatttttcctCATGTGTGCTCTGTATTTTCCTGATCAGGTGTATAATCTGTAGTTATTTATAGGGTTGTTGGAGCAGATGTCTtaatgtgatttgttttttttcctgaaagttCATTAGCAGACTTGAAATGGACAAGTGCTTGTCTCTTAGCGTGGACCCTGACTCGATGCACATCAAATTGCACTTTTAAGATAGCATGTAAGATAAAAGCCTTTCCTCTCTCAATGCTCAATATTTAATAACCCcatattaaaggagcagtttgttattttttaagcaTTGCAGTAACAATGAAAATATTGACAAACCTTCACTTTAACCCACCAACCCCACTCTGTCTGTACAAACTACATATTTATGCCCTATGGGGCAGAATTAATCAGAGTTCTGTTGGCTGCTGGTGAAGCTattttcagggccagaaaactCCAAAATACAAGCCTTAGATGAATAATCTAGCCAGATTCTTTGTACAACAATGTtgctattttcagttttttaaggAGTCTTTAAATTGtatgattattacaggtctTGAAACACTTTCAAAATTacatactgcacctttaaatatttcagatgaAGCACTGTTCAGTCATTGTCAGTTCATTGCAAGCAATGAAATaacactggcagtcttcaaattgtttatttataatatatataaataaagctatGCTCTCTTAAAATACATATAGTCATAACACTCATATGAAGTAAAAATTATTATCTCATTAATACCTTCCTACGTAATGATCACTATTGTGATGAAACAAAGCTCTTAGTGGGGTTAACTGTCAGTTCGAGTAGATTGGTTAAGGTTAGCACTTGCACTAAACTCTTTTCCCTCTTCTCAAAATTTTGagattgtaattttataaattgCAAATCCGTATTTGTAACATCCTCATATTACACTGACGAGCCCTAATTATATGTGTACAATGTTCCTGCTTCcattacatattatttttatgtatttacacatttcatGCTACATTTAAGAATCGCTGCTGTAAGGCTTTGAGGGGTGAGATCAAGCGAGTCGCTAAGGTGGAGCTAAAGCAAATAAGTTTTAGAAGTAAAACATAAGAAATAACGTTTTACAAGTTGTGAATTTGCAAAAATAACTGGAATGAAgtttataaaattatgaattttccACTGCGTTCATGTACAAACTATTGGACTATTGACATGATCATGGAAATCATCTTCATAATCAACTCTGTCATCAGAAAGCAGGGTCTGTGGGTTAGCAAACCATCTGAGAACCTTCTTGCATTAAACCCATTGGCTTTCTAGTGAAATGCTGATAactgaacagaaaaaagaaacataaagtGAGTAAGTGAGGTGTTGGACCACCATGAGCttccagaacagcttcaatgcaccTACACGTCTCTGGAACTGTAATGGAGTGATGAACACCTTTCTTCTAAAAGATACATCCCTCAGTTGGAGTTCTGATGTTGGTGTTTTTATACATCGCTCCATGTAACGTCTCTCGCTGGTGTTCGTTTGAGAGTGTGGAGGCCaaagcatctgatttacatcaCGTTTcatcatcaaaccattcagtgagccctggTGCCGTGTGGATGTGGGCGGAGCCATCCTGGAGGTGGTCACGCCCATCAGGTGAGAGATGTTTCCTCACAGAAGAACTATGTGGactcaaaccatgccagcaacataaataaatgcccccccATGTCATAACAGAGCTACCtgtctttcttttaatttgtatataattttttttcttttgtgtagACCTGTGTTAATAGTCATGGATAAGGATCAactttttgtgtaaatgtgtaaataaaattaattttgccCTGA

Function

GO: NA

KEGG:

id description
K20286 TMF1; TATA element modulatory factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU356639 lncRNA upstream 17079 2906708 ~ 2908054 (+) True G300775
TU356715 lncRNA upstream 188225 2736478 ~ 2736908 (+) True G300843
TU356713 lncRNA upstream 188272 2736478 ~ 2736861 (+) False G300843
TU356712 lncRNA upstream 189126 2735036 ~ 2736007 (+) True G300842
TU356710 lncRNA upstream 195526 2728484 ~ 2729607 (+) True G300841
XR_003403928.2 lncRNA downstream 87674 3028940 ~ 3060846 (+) True LOC113539486
TU357449 lncRNA downstream 511405 3452671 ~ 3453505 (+) True G301487
TU357469 lncRNA downstream 580526 3521792 ~ 3530359 (+) True G301506
TU357636 lncRNA downstream 969374 3910640 ~ 3912283 (+) False LOC113539463
TU357807 lncRNA downstream 977064 3918330 ~ 3918531 (+) True G301792
XM_026935730.2 mRNA upstream 21526 2894838 ~ 2903607 (+) True hmces
XM_026935728.2 mRNA upstream 21526 2894994 ~ 2903607 (+) False hmces
XM_026935731.2 mRNA upstream 21526 2894995 ~ 2903607 (+) False hmces
XM_026935729.2 mRNA upstream 21526 2895015 ~ 2903607 (+) False hmces
XM_026935727.2 mRNA upstream 21526 2895078 ~ 2903607 (+) False hmces
XM_034314416.1 mRNA downstream 591 2941857 ~ 2958705 (+) True eogt
XM_034314415.1 mRNA downstream 591 2941857 ~ 2958705 (+) False eogt
XM_026935664.2 mRNA downstream 24098 2965364 ~ 3013692 (+) True tafa4b
XM_034314060.1 mRNA downstream 27236 2968502 ~ 3013692 (+) False tafa4b
XM_034314061.1 mRNA downstream 36463 2977729 ~ 3013692 (+) False tafa4b
TU355411 other upstream 1426646 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 1427506 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 2060245 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 2080322 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 2404246 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 1525811 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 3722808 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 5560372 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 5560372 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 7571405 10512671 ~ 10513270 (+) True G305515

Expression Profile