RNA id: XM_026935433.1


Basic Information

Item Value
RNA id XM_026935433.1
length 2197
RNA type mRNA
GC content 0.46
exon number 16
gene id rbm39a
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8901673 ~ 8908531 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAGCTCCGCCATCATGGCCGACGACTTTGACATCGAAGCCATGCTTGAGGCGCCCTATAAAAAGACATGCCTATATCTCACCTCTACTCCCATGAATTCCAGTGTGAACTGTCAAAAAAATGAAGGATGAGACCAAGTCCATAAGTTCCAATGGGCATGAAGAACGGAGCAAGAAgaaaaagaagagcAGAAGTCGTAGtaggagcagagagagaaagagaagcaggAGCCGGGAACGCAAAAGGAGCCGGAGCCAGGACAAGAGTCGTGAGCGAAAGAGGAGCAGGAGCCGAGAAAGGAGACGCAGTCGGAGCCGAGAAAGGAGACGCAGCCGTTCCAGGAGCAGGGAGCGTGGAGGGCGCTTCAGAACAGCCTTtTCTGGCCTGAAATTTAATGGTGGTTCCAGGGGGAAGACTGGCCCACTGCCTGTCATCAAACTAAGCCGGAGAAAGTCCAGGAGCCGGAGCCCATTCAAACGAGACAAAAGTCCTATCAGACAGCCTATAGATAATCTCACACCAGAGGAGAGGGATGCCCGCACAGTTTTTTGCATGCAGCTTGCTGCCAGAATCCGGCCCCGGGACCTAGAGGAATTCTTCTCTGCTGTGGGGAAAGTGAGAGATGTGAGGATGATCTCTGACAGAAACTCCAGAAGGTCCAAGGGAATTGCCTACATTGAATTTGTGGAAGCCACCTCTGTACCACTGGCAATTGGTCTGTCTGGGCAAAGGCTGCTTGGAGTACCAATCATTGTTCAGGCTTCACAAGCTGAAAAGAACAGAGCTGCTGCAATGGCCAACAACCTGCAGAAAGGCAGTGCTGGACCTATGAGGCTGTATGTTGGCTCTCTGCATTTCAACATCACAGAGGACATGCTCAGAGGGATCTTTGAACCATTTGGACGGATTGATAGTATTCAGCTTATGATGGATAGTGAAACGGGGAGATCCAAGGGATACGGCTTTATCACGTTTGCTGATGCTGAGTGTGCTAAGAAAGCCTTGGAACAGCTAAATGGCTTTGAACTGGCTGGCAGGCCAATGAAAGTGGGCCATGTGACTGAGCGCACTGATGCCTCTACAGCCAGCTCTTTCCTGGATAACGATGAACTGGAAAGGACTGGCATTGATCTGGGCACCACTGGGAGGCTGCAGCTAATGGCCAGGCTGGCCGAAggGACTGGTCTGCAGATCCCTCCAGCTGCACAGCAGGCTCTTCAAATGAGCAACTCAATGGTGGCAATGGCAGCAGCTACAGCGGCTATGAATCCTGGATTGAGTTTCAATATCAACGTACCCACAAATCAACCTCTCAATCTACCGTCTCAGCCAATTGCCACACACTGCTTCCAGCTGTCCAACATGTTTGATCCAAATTCGGAGAATGAACTTGGATGGGACATTGAAATCCAAGATGATGTAATTGAAGAATGTAACAAACATGGTGGAGTAATTCATATATACGTGGACAAGAAATCTACCGAGggaAATGTATATGTGAAGTGCCCAAGCATCCCTGCTGCAATGGCTGCTGTTAGTGCATTACATGGACGCTGGTTTGGAGGTAAAATGATCAAAGCAGCATACGTCCCTCTGCCAACATACCACAATCTTTTCCCTGAGTCGGTGCAAGCTACACAGCTTCTTATGCCTACTCGTCGGTGATCCCTGGAGCTCCACTTTTTCAGgctttctctttttaataattttggcaaaatattaatattaaatacctGCAAGCTTTGACACCTTTGTGTACGTTTATGCCCTTACATCACCTGGGCATTAAAGAAGTTTATGTGGTAGTTTTGTATGTACAGCCTTTTTTGTTCCCTTTCTTGGTGGGCCTTTTGACCCTTTATTGTTTATACAGTTTTCAGGGTTTGTTTTCTTCCACACATTGTCTTTGTGATTGGCATGAGTTCCATTAGAAGACATGTACAGTTAGCCACACCAAACTACAACTATTGAATCttttttgaatgaattaaaatccTGTAGCTTTGGTTAAATATCTACATGCAGTGTTTTGGGCTCAATGAGCTgaaggaaaattaaaatgactgaTGAGATCCTGTGTGTTCATAGAGACCATTATGGGTTTTGATGCATTGTCTTTTTCTAATTAAGACTTGATTTTGTAAAGTCCTTGAACAGTTCATTTCAAATAAAGCCATGATGCTGGTTTATTTGTCA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361012 lncRNA upstream 140266 8761931 ~ 8762253 (+) True G304600
TU361008 lncRNA upstream 140876 8756598 ~ 8761643 (+) True G304599
TU361011 lncRNA upstream 143969 8756598 ~ 8758550 (+) False G304599
TU360977 lncRNA upstream 184056 8718224 ~ 8718463 (+) True G304575
TU360968 lncRNA upstream 212810 8689493 ~ 8689709 (+) True G304566
TU361111 lncRNA downstream 30528 8939059 ~ 8939687 (+) True G304669
XR_003403942.2 lncRNA downstream 96160 9004691 ~ 9016994 (+) True LOC113539633
XR_004580248.1 lncRNA downstream 97372 9005903 ~ 9016994 (+) False LOC113539633
XR_004580247.1 lncRNA downstream 111069 9019600 ~ 9021252 (+) True LOC113539427
XR_003403926.2 lncRNA downstream 111069 9019600 ~ 9021252 (+) False LOC113539427
XM_034314007.1 mRNA upstream 22843 8869019 ~ 8879676 (+) True rem1
XM_034314443.1 mRNA downstream 9907 8918438 ~ 8926213 (+) False nfs1
XM_026935681.2 mRNA downstream 9908 8918439 ~ 8926213 (+) True nfs1
XM_034314444.1 mRNA downstream 10655 8919186 ~ 8926213 (+) False nfs1
XM_026935213.2 mRNA downstream 319911 9228442 ~ 9237329 (+) True syt6b
XM_026935592.2 mRNA downstream 407867 9316398 ~ 9335379 (+) False inavab
XR_004580199.1 other upstream 343608 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 343731 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2123161 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4433345 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7404032 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1604140 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1855743 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1860176 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1860176 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 2203208 11111739 ~ 11112518 (+) True G305727

Expression Profile