RNA id: XM_026935455.2


Basic Information

Item Value
RNA id XM_026935455.2
length 2241
RNA type mRNA
GC content 0.47
exon number 15
gene id gnl3
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4666876 ~ 4673687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACACGCATTTGGACTCAGTTCGCGCGAGCACGAGCGCGAGCGCAAGCGGAACCGGAAACAGATAGTGAGCGAGCTTTCGCACGGAGACTCCGCGTGCGAGGAAAGCGCGTGGCAACGACAACCATGAAGCGACCAAagTTAAAAAAGGCGAGTAAGCGCATGACCTGCGCCAAACGTTTTAAAATCCAGAAAAAGGTTCGAGAACATCACAGAAAACTCAGGAAAGAGGCGAAGAAGAGCGGAATCAGACGCAAGATCAAGAAGGACATTGGCGTCCCGAACAGCGCACCGTTTAAGGAGGAAGTCCTCAGAGAAGCAGAGCAGAGAAAGCAAGAGCTTGAagagctgaaagagaaaaacagactaGCGAAGCAGAAGGAACGAgctgagaagagaaagaagggcAAAGAAGAAAGCAGTGAGGACACGCAggcaaagaaaaggaaagtgaaaaagGAGGAGAAAGTGAAAGCGCAGAGGGAAGCGAGGGCAGCTGTCGCAAAAGAGAAAAGCTCAAAGAGGTTCCGATGCAGCGAATTGAATAAGGTTATTGAGGCCTCTGACGTGATACTGGAAGTCCTGGATGCCAGGGACCCTATGGGCTGCCGCTGTACTCAGCTAGAGGAAGCAGTTTTAAAACACAAGGGGAAGAAACGGCTGCTGTTTATACTAAACAAGATCGATCTTGTGCCCAAAGACAATCTGGAGAAGTGGGTACAATATCTTCAAGCACAGTGTCCTACATTTGTCTTCAAATCATCTGCACACCTCCAGGACAGGACTGTGCTTGAGAAGAAGCAGAGAGCTGCCAACAGTACCGCTGACCAGAACAGACCAGGAGCGGCCTTCGGCTGTGATTCTCTCATGCAGATACTCAACCAGTTGGCCAACAACCAAGGCAGTGAGACTATGCTCAAAGTCGGTGTTGTCGGTTTCCCTAATGTTGGAAAGAGCAGCATCATAAACACTTTAAAAGGCATCAGAGCGTGTAATGCTGGAGTACAGCGAGGACTGACCAAATGTATGCAGGAAGTGCATATCTCTAAAAAGGTGAAGATGATCGACAGCCCAGCCATAGTGGCAGCTCCGTCTAACTCCGCTGAGAAGCTGGCTCTGAGGAGTCTACAGCTGGACGATAAAGAGCAGAATCCTCTCGAAGCTGTCAAGTCTGTGTTGAAACAGTGCAACCAGCAGCATATCATGCTACAGTACAACGTCCCCGACTACAGAAACTCGCTGGAGTTTTTAACCTTCTTCGCCAAGAAGCGTGGCTTGCTGCAGAAAGGTGCGGTTCCCAACACGGAGCAGGCCGCAACTGTGTTTCTCAATGACTGGACCGGAGCTAAACTGAGCTTCTATAGCAAAGTACCAGAGCGAGACGGCCTCCCTCCGCACCTCACTGAAGCCATGGTTACAGAAATGCAGACAGGTGTGGACTTGGACAGAATGAAAATGGGCAACGCGCAGATTATTAAACGTGTGCGAAATCCAAAACTGTCGACCACTATAGTGTTCAACTCGAAGGGCCTGACTGCTGGAATTCTGAATGTCAGTGAAATCccagaagaaaaacacacaccgggggaggaagaggagcaggaggaggaagaggaagaggagcaggaagaggaggatgaggatgatgatgaggatgatgatgaggatgatgatgaggatgaggatgatgatgatgaagaagaggacATTTTTGAGGAAACAGAAGAAATGGAGGACAGTGAGGAGATTGAGACCCCAGACTTAAAGAAGACCCAAACTCAGAAATCACGTAAACAGAAGAAAGGAAATGCAAACCCTGCTTCTGTCAACATTGATCTGTTGTCTGCGCACAAGAATGACGATGACGCCTATGATTTCAGCACGGACTTTGTATAAGCTGTCACCTCCACAAAGAACAGATTTCACCTGGAAGAGTCAGCCGCTGTGTGAACTGTGATATATCTATGGCATATGTAATCCACTGACTGAAAGATCTGgctgaaaacacattttctgtcGGTCTGACAGAACCAGTTGTATATATGACGGATTATTAAACtaacttttaattttctgtacTTTAAGTGTCAGTTGTCATTTTTAAGTTTGAGGGACCTTCTGAAATGTCCACTGCTTGTATCATATATCTACAACCATGCAAGCAAACATTCTCATTATCATAACAACTGCTTGAAAGACCAACTGCACTGAATGttacttcttaaaataaaacttctaccaca

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0003407 neural retina development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0007096 regulation of exit from mitosis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005730 nucleolus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU357951 lncRNA upstream 371360 4295308 ~ 4295516 (+) True G301923
TU357949 lncRNA upstream 372143 4294467 ~ 4294733 (+) True G301921
TU357907 lncRNA upstream 388227 4272096 ~ 4278649 (+) False cadpsa
TU357911 lncRNA upstream 498230 4138782 ~ 4168646 (+) True G301885
TU358359 lncRNA downstream 58466 4732153 ~ 4733061 (+) True G302281
TU358451 lncRNA downstream 147005 4820692 ~ 4820899 (+) True G302360
XR_004580245.1 lncRNA downstream 163465 4837152 ~ 4878375 (+) True LOC117599916
TU358624 lncRNA downstream 501883 5175570 ~ 5217425 (+) True G302530
TU358652 lncRNA downstream 753520 5427207 ~ 5471492 (+) False ptprga
XM_026935463.2 mRNA upstream 197680 4451040 ~ 4469196 (+) False LOC113539599
XM_026935462.2 mRNA upstream 197680 4467059 ~ 4469196 (+) False LOC113539599
XM_026935461.2 mRNA upstream 204677 4451040 ~ 4462199 (+) True LOC113539599
XM_034314452.1 mRNA upstream 217499 4432525 ~ 4449377 (+) True sfmbt1
XM_026935399.2 mRNA upstream 248110 4390352 ~ 4418766 (+) True prkcdb
XM_026935468.2 mRNA downstream 7343 4681030 ~ 4683551 (+) True spcs1
XM_026935208.2 mRNA downstream 21472 4695159 ~ 4740849 (+) True camk1b
XM_026935407.2 mRNA downstream 536957 5210644 ~ 5471561 (+) True ptprga
XM_026935689.2 mRNA downstream 800203 5473890 ~ 5486512 (+) True cse1l
XM_026935774.2 mRNA downstream 833306 5506993 ~ 5510940 (+) True LOC113539749
TU358141 other upstream 197702 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 3168389 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 3169249 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 3801988 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 3822065 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 1990387 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 3827951 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 3827951 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 5838984 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 6090587 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile