RNA id: XM_034314339.1


Basic Information

Item Value
RNA id XM_034314339.1
length 2979
RNA type mRNA
GC content 0.42
exon number 6
gene id mon1bb
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10280520 ~ 10289815 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAAGTTGTGCGCATGCGCAGCGGAAATCGCAGCGGAAGAGGACAAGAGTAACGCTTCAACAAAAGCCTAGCCGGTACAGCTTCTTGatgaaaaactgttttgtttagaATACTATTCTGATACATTCTGCCCTAAAGATGCCTTCCCTAGACATACATGTTATGTTTACATGAATAAGGGGAATCAGAGTGAATATGAATAAGATGGAGACGACGGACTCACCTGTTATCACGTCTTTACATCAGAGCGATAAAAATGAAAGGCAATCTGAAAATAATTTAGACAGTATTTCAGAGGTGGAAGATCTCATAACTCTCCCAAGAATGGAAAGAGGTAAAGAGACAAAGCTGATAGACAGTTCTTCAGAAGACAATTTAAACCCAAAATATCATCCTGTGGACATTAAGAAAgaagagactgttgtgtttgaTGTATCAGAAACTGGTAAACCTTCGGAGGACAATGGCCATGAAGACTCTGGTGAATTTGTTGTGGCCATGTTAGCTCGAGGAAACCTGGAAGAGCAGGGTGTGTGCACAAAGAGAATTTCATCCCCTCTCTCAGAAACTCCCCTAGAGGCTTCTTCTCACTGGGACGAGGATGTGACTGCAGAGAGCTGGAGACAGCACCGGAAGCATGTTTTTGTTCTGAGTGAGGCCGGGAAGCCCATCTACTCCCGCTACGGCAGTGAGGAAGCCCTCTCCTCCACCATGGGTGTCATGATGGCTCTGGTGTCCTTCATTCAGAGTGGGGACAATATCATTCGTTCTGTCTACTCAGATGAGCATACAGTGGTCTTCATGCAGCAGGGGCCTCTGgtgcttgtctctgtctctagcACCCGTCAGTCCGAGCAGCAGCTACGTAATGAACTGCTTTATGTCTATAACCAGATTGTGAGTATGCTCACCCAAGCCAGCATCACCCGCATCTTTGAGCACAAGAAGAACTATGACTTGCGCCGATTGCTAGCTGGCTCAGAGAAGATCCTAGACGGTTTACTAAACTTGGTTGACTTTGACCCTAGTTTCTTGCTCTCAGCCGTGCACTGTCTACCTATTGCCTCTTCATTCAGAGACTCTCTTAGCCAGATACTTCAGAAAGCCATCACTCCCAACCTAGTCTTCTCTATCCTCATTGCCAAGAATCAGCTGCTCAATCTTATTGGTGCCTCCTCTGCGTTCCAGGCCGGTGAGATCTGGACCCCAATCTGCCTGCCCAGCTTTAATCCTGACTGTTATTTTTACACCTACATATCCTACCTGGACCCACCTGCGTGCACAGTGTGCCTGCTGCTGCTCTCCACGGACAATGAGGCATTTTATGCAGTGGCAGAGTGCAAGAGGAAGATTGAAGAAGCCATGCAGGCCCAAAATGCTTTGACCTCCATTGCCAAAGCTCAGTCCTACAGTGTTAGTCAGGTGGGAGTGTCTGATCTCCGTCACTTTATGTACAAGCCTTTTGATGTTCCAGACAACCACCATCAGCTAACACAGTTCACCAGCCCAGAGATGGAAGCTCCTTACGACAGTGAGGAGGAGAAGATGAGGCTGCTGGACCTTTACAGAGATATGCATGGCCGCATACACAGCGCTTCACGCCCTCTTAAACTCATCTACCGTGTGGCAGCACGAGAGACCCTGCTGGCCTGGGTTACAACCAAATTTGAGCTGTATACTTGCTTTAGCCCTCTTGTAACAAAGTCCTGTGCCATCAACGCTATTACGAAACTGCTGCGGTGggtgaagaaggaggaggaccGTCTCTTTATACGATATCCCCCGAAGTACTCAACCACACCCAATGCAAGCAAAAGCTGAGAGTGGTGCTCAGTTGAACTCTGCTAATAATGATGTCCTCTGTGTCAGAACTGACAATCAGCACTCCGTTTCAGATGGATATGGATCATGCTGAGCACTAAATTCTGCCCAGTACCTCAGCAGCACAGGAGAAGTCTTTATTACTTTTGTTATTAATAGTAATGTTTGAAATATTGCAGTCCTAACTTAACATGTCTTTGGATGATGGAATCAAGTAGGTGCTTGATTTCTTGATTTTGTACAAAGATTATCGTGAATCAAATTAATCAAACATTAGGCTCCATGTTATCACTTTAAAATGCTGATGTTCCTTTATTAGAACAGGAGctgaaaaaatgtgttctgtctccatattaacattaatttaatttgaataattaaatagCGGCATTGTCTTAAACCTTTTTCATGTCAGTGTGTTCTATAAAATTGAGCTGTTTGACAGTTGGCtagtttgaataaaaaaagatatttttaaagagACACCAGGAGTGGCCACTAGGCTTGTGTAATATCAGTGAATAACAATATTATTGTCCCTACATGATATTATATTGCCAGgatatccagtgatgtttattgCACAGAGATTAAATAGGCCTTAAACGAAGTGTCAGATctaacactttaaaataatgttaatggtaaggataatttaaaaaagtgatcatttttttttctttttgactgGCACTTTCCTGCTCAACATTGAGCTGcaaaaactgagaaaatgttGGCAGTGTGGATATTAGACAACTGATATTTAAAAGGATTACATTGaaatgtgtggtttttttttttggtttttttttgttttttagcagtttactgcacattactgcagaatcacttgAAAATacaccatccagctgagtttttgtgattgccACAGTTCCAAACTTCATAGCTGGTAATAATATTATGCCTCCCCTACTGTTGTTAAACTGGAAATTgtggaaatgcttgttttcctttgtttttgtttttttttaggttaaaTGGTTCTGGAAGATTGTGTTTGTCATGCTACTATAAAACGAAAAATCAAGATCAGGAAAAATCAACATAGCACGAGTCTAGTGGCCAACATTTAATGTATTACCCTTGAATTAACCTGTCTACTCCCAACCAGATttccaagacaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361935 lncRNA upstream 25206 10254595 ~ 10255330 (+) True G305383
TU361934 lncRNA upstream 26262 10253890 ~ 10254274 (+) True G305382
TU361912 lncRNA upstream 48344 10230532 ~ 10232192 (+) True G305368
TU361730 lncRNA upstream 140806 10139288 ~ 10139730 (+) True G305210
TU361752 lncRNA upstream 208068 10072249 ~ 10072468 (+) True G305232
TU361944 lncRNA downstream 41928 10331743 ~ 10331947 (+) True G305392
TU362073 lncRNA downstream 162386 10452201 ~ 10452404 (+) True G305475
TU362098 lncRNA downstream 189885 10479700 ~ 10479918 (+) True G305496
TU362108 lncRNA downstream 195639 10485454 ~ 10511398 (+) False LOC113539715
XR_004580263.1 lncRNA downstream 200736 10490551 ~ 10511435 (+) False LOC113539715
XM_026935605.2 mRNA upstream 141650 10102314 ~ 10138886 (+) True gnl3l
XM_026935383.2 mRNA upstream 181014 10095530 ~ 10099522 (+) True LOC113539559
XM_026935607.2 mRNA upstream 707247 9568051 ~ 9573289 (+) True lmod1b
XM_026935611.2 mRNA upstream 728911 9536125 ~ 9551625 (+) False shisa4
XM_026935244.2 mRNA upstream 792507 9437233 ~ 9488029 (+) False ipo9
XM_026935673.2 mRNA downstream 478892 10768707 ~ 10773442 (+) True LOC113539694
XM_026932796.2 mRNA downstream 771193 11061008 ~ 11064101 (+) True ppcs
XM_026932797.2 mRNA downstream 771197 11061012 ~ 11064101 (+) False ppcs
XM_026932795.2 mRNA downstream 771389 11061204 ~ 11064101 (+) False ppcs
XM_034314395.1 mRNA downstream 789245 11079060 ~ 11107165 (+) False cpne1
XR_004580199.1 other upstream 1721625 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 1721748 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 3501178 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 5811362 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 8782049 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 222856 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 474459 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 478892 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 478892 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 821924 11111739 ~ 11112518 (+) True G305727

Expression Profile