RNA id: XM_026935544.2


Basic Information

Item Value
RNA id XM_026935544.2
length 5131
RNA type mRNA
GC content 0.51
exon number 30
gene id ppfia4
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7706228 ~ 7834194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctttctttttttttggagcgATCGCGGACGATCATGCGCTTCTCCACGCACACCAGGCTCTGTGTCCTTGCACAGCGTCTGCGTTATCGTGGATGAATCCAGGCTATGTGTGTATCATTGTGGAGATAGCGGATCGGCTGCGTTCCTGCGCGCTtgaaggaaggaggaggaggaagaagaagaggaggaggaggacgacgACGAGAAGGAGTTGGCTCGTGGCGGATGGCAGATGGCAAAGCGATCTGGAGGATGCGATGGACACGATAACCGCGATAATCACTGCAACTGGTGGGCGTTAAATCAGCACGATTTTGGAGCATGCAGGATGATGTGCTCTTCATGTAAGTGATCCGTCCGTCAAAGATGCCACGGTGCTCTGGAAACAGGGTGGAGAGTGTCAGGATGGAGAAAGCCTACACCCATGGAATGACTAAAGGTCAAGTTATTTAGGGAAAGGCatggttttaaaataaacaggaaaGTCCAATCAGTATGGTTGTCTTTATTTTGCGCATGGTAAGGCATCTTGAGTGAGTGATCCCAAGCCAAATCAAAGCACTTGGCTTGATAGCATCACCTTGTCTAACTCATTGAGGAAACTGTCAGACCGAGACTTTGCGGCAGGTTTTCCGGAAAGGTTGGCAAGATGATGTGCGAAGTGATGCCGACCATCAACGAGGGAGACTCGACGAGTTCCCAGAGAGGTTCTCAGAACGGCTCGGATGGGGAGTCCAATTTCGAGCAGCTGATGGTGAACATGCTGGACGAGAGAGACAAGCTGCTGGAGTCGTTACGCGAGACCAGAGATGCTCTCGTACAGTCACAGGCCAAGCTTCAGGAGGCCCTTCATGAGAGGGATGCTCTCCAGAGACAGATCAGCTCCGCGCTGCCACAGGAGTTTACATCACTAACGAAGGAGCTGAGTGCATGCCGGGAGCAGCTTctggagaaagaggaggaaatcTCTGAGCTTAAAGCAGAGAGGAACAAcaccaggctcctTCTGGAGCATTTGGAGTGCCTGGTGTCTCGTCACGAGCGCTCTTTGAGGATGACGGTGGTGAAGAGACAAGCTCCTCCACCCTCCGGAGTCTCCAGTGAAGTGGAGGTGCTTAAGGCTCTCAAATCTCTGTTTGAGCACCACAAAGCCCTGGATGAGAAGGTGCGGGAGCGACTGCGTGTGGCTCTGGAGAGAGTGACATCACTAGAGGGCCAACTGGCGGCCACCAGTCAGGagCTTGCCATGGTGCGACAGGGAAGAGATGGAAAGACAGATGGCAACAAAATGGACGGCGCAAAACCAGCCTGGAAGAGGCTGCCTAATGGCTCCATAGATGTCCACGATGATTCCACTCGTGCTATGGAGCTGCAGGAACTGCTAGACAAAGCTAATAAAGATCTGTCGACGAGTCGTGAGCGTGCTAACACACTGAATACCCGCGTGGCTGAGCTAGAGAGCGAACTCGCCAATGTGCGCAAGGAGCTGCTGAAGAGCGAGGAGTTCAACGCCAAACACCAGCGAGACATCCGCGAGGCGATGGCACAGAAGGAGGACATGGAGGAGCGAATCACAACGCTAGAGAAGCGCTACCTGGCTGCACAACGTGAAACAACCTCCATCCATGACCTGAATGACAAGCTGGAGAACGAGCTGGCCACCAAGGACTCGCTCCATCGACAGAGCGAGGAGAAGGTGCGTCATTTGCAGGAGCTATTGGAGCTGGCTGAACAGAGGCTACAGCAGACCATGAGGAAAGCCGAAACACTGCCAGAGGTGGAGGCTGAACTGGCTCAGAGAGTGGCTGCTCTCACCAAGGCAGAGGAACGACATGGAAACATTGAAGAGCGTCTTCGGCAATTAGAGTCGCAGCTGGAAGAGAAGAACCAGGAGCTGAGCCGAGCTCGtcaaagggaaaaaatgaatgaggAACACAACAGGCGTCTGTCGGATACAGTGGACCGCCTGCTCACTGAATCTAATGAACGCTTGCAGCTCCACTTGAAAGAACGAATGGCTGCCCTGGAGGATAagAATGCACTCATCCAGGATCTGGAGAATTCCCAGAAGCAGCTGGAAGAGTTCCACCACAGCAAGGAGAGACTGATAGGAGAAATTGAGAAGCTTCGCACAGAGCTTGATCATCTAAAGAGAAGGAGCGGAGCTTTTGGAGATGGAACACATCCTCGGTCTCATCTGGGCAGTGCCACAGACCTGCGTTTTTCTGTGGTGGAGGGACAGGGGGAGCACTTTGCCAGTACAGGAGTCATTCGGCGAGCACAAAAAGGAAGACTGGTAGCACTCAGGGACGAGCCCACAAAGGTCCTGCCGGTGGTTGAGCAGGACTGGGAGCGATTACAGCCTTCTAGCCTTCGAGGCAGCCGCTCACACCTGATGGGCAGTGACACAGAGCTCTCAGAGCTGGACGATGATGACCGTGAGACCGTGTTCAGCTCAGGGGACATGCTGTCTCCCAGTGGTCACTCAGATGCTCAGACACTTGCCCTCATGTTGCAGGAGCAATTGGATGCCATCAATGAGGAGATCAGGATGATCCAAGTAGAGCGAGAATCAGCCGAGCTCCGGGCAGATGAGATTGAGAGCCGTGTGAACAGTGGTAGCATGGATGGGCTGAACGTGACGCTGCGCCCACGGTCTACTATCCCCACCTCGGTCACTGCTCTCTCCCTCGCTAGCTCTTCACCTCCCGTCAGCGGCCGCTCCACTCCAAAGATGGCATCTCGCTCCACTGCCCATGAGCTGGGTGTCATGACCCTgCCTAGCGATTTACGAAAACACCGCAGGAAAGTCACTTCTCCAGTGGAAGCTCGTGAGGATAAGGCCACTATAAAGTGCGAGATGTCACCTCCTTCCTCCCCTCGTAGTCTCAAACTCGATCAGATAAACTTCGCTCAGCTGACCGGAAGCCTCGAGGATGGACgaggCGGCAACAAAAAGAAGGGAATCAAGTCCTCCATTGGCCGCTTGTTTGGCAAGAAGGATAAGCCCCAACCAATGAGCAAAGACGGCCAGGTGACCCCTCCTGTAATTCCAGATTTTGAAATGAGCATTGGAGATACTATGACCCTGGGCAAGCAGGCTGAGAGAGACCGCAGGATGAAGAAGAAGCATGAGCTTTTGGAAGATGCACGGAGGAAAGGCCTTCCGTTTGCTCAGTGGGATGGCCCGACGGTGGTCTCTTGGCTTGAGCTGTGGGTTGGAATGCCAGCGTGGTACGTAGCGGCTTGCCGTGCCAATGTGAAGAGCGGTGCCATCATGTCTGCGCTATCCGATACAGAGATCCAGAGGGAGATCGGCATCAGCAACCCACTGCACAGACTCAAGCTCAGACTGGCCATCCAGGAGATGGTGTCACTCACCAGTCCCTCGGCCCCACTCACCTCACGCACCTCCTCCGGAAATGTCTGGGTGACTCACGAGGAGATGGAGAACATGGCAACCTCCACCAAAGCAgagaacGAGGAAGGGAGCTGGGCacagACCCTGGCATATGGAGATATGAACCATGAATGGATAGGAAATGAGTGGCTGCCTAGTCTGGGCCTGCCTCAGTATCGCAGCTACTTCATGGAGTGTCTGGTGGATGCTCGCATGCTGGACCACCTCACCAAGAAGGACTTGCGCACTCACTTAAAAATGGTGGACAGCTTTCATAGAGCCAGTTTACAGTACGGCATCATGTGCTTAAAGAGGCTCAACTATGACAGGAAGGAGCTGGAGCGAAGGAGAGAGGAGTGCCACCATGATCTCAAAGACACTCTAGTGTGGACAAATGAGCATGTGATGAACTGGGTGCAGACCATCGGGCTAAAGGAGTACTGCAATAACCTTCTGGAGAGCGGCGTACATGGTGCCCTCGTCGCCTTGGATGAGACATTCGACTTCAGCAGTCTGGCCCTCATCCTGCAGATTCCCATGCAGAACACACAGGCCAGGCAGATCCTTGAACGGGAGTTCAACAACCTCTTGGCCTTGGGGACTGACAGGCGTCTGGAGGAGAGCGATGATAAGTCTTTTCGGAGGTCCCCATCATGGAGAAAACGTTTCAGACCACGGGATGGCCAAGGCCTGGGCATGATGCCCGGCTCCATTGAGACGCTACCCGCTGGCTTCCGCCTCTCCACCATGTCCATTCCCTCCTCCATGACTGTCAATCCCAAGAAACAGCTGCAGCCTGAAGCTGGACCCCAAGCCCCTCAGAGACTTGATCCCTCTGCCATCAGGACTTACTCTTGCTAACTCTGCTTTACTAACAACACTCATGTTATCAGTGCATTCTCACTACCTGTATGGACACACGCTCGCGGCCTTTCGAGAGTGATATGCCAAATTTCTGGGGCAGATGTCCTCCTGCCAAATGAAACCAGTGCTTTTATGGACACCGTGCAATGGGAAGGGGGGTAGGGGggacaggacaaaaaaaaaactaaactaaaagcTGAAATTTGAACTTTTGAGCGCATCTTTTGCGTAGCTGCTCTTAGAGGAGATATATCGTCGTGTGAGTCACTTTCTAGTAGCCAAAAGTTATTTAGTCATTGTGATGGTAATTTTCAGCTGGTGTACTTGGCCCTAGTTTGTCAGTTTTAGTCTATTCCCAAGGGTGTGTTGATGGCAACTTATTAGGCTTCCCCCTCTCTGGTTATGCAAGGTATTAATCAGTGTGTCTGTATATACAACTgattataattgtttttttatatatatatatatatatatttaaaaaatgcatataaataacataTATATTGGAATTGTATATGGAAAAGATTATATCAATATGATATGAATACTGACGATATGTCTCAGTTGTgactgtttctgtttgtttgaaaCTCTTTGACCAGTGTTAAACTTGTAGCTACTGTTTTGGACAGTGTAAGTTTTGGACTAAGCTGCTGTTTTCTGCTGATCTGAGACCAGTTTTGGTTATAAAATAGATATAGATAATAGACTGGGATCTACAAAGGGCCAAGCTGATCGCAGGTCAGTAGAAAAGGGCTTAGTACAGTATATCAGTAGCATCCGTGGTGTTATTTGAGGAAGATTGTTTTCGATCACATGAACAGTGCACATCTATATGTCAgttcattccaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU360300 lncRNA upstream 985 7704216 ~ 7705243 (+) True G303966
TU360208 lncRNA upstream 257489 7437455 ~ 7448739 (+) True G303892
TU360207 lncRNA upstream 260042 7420706 ~ 7446186 (+) True G303891
TU360205 lncRNA upstream 285650 7415415 ~ 7420578 (+) True G303889
TU360102 lncRNA upstream 600699 7101770 ~ 7105529 (+) True G303806
TU360545 lncRNA downstream 69161 7903355 ~ 7903564 (+) True G304193
TU360554 lncRNA downstream 140432 7974626 ~ 7983380 (+) False lrrn2
TU360645 lncRNA downstream 326487 8160681 ~ 8191673 (+) True G304286
TU360648 lncRNA downstream 327605 8161799 ~ 8165909 (+) True G304289
TU360658 lncRNA downstream 383674 8217868 ~ 8218135 (+) True G304299
XM_034314028.1 mRNA upstream 112770 7549786 ~ 7593458 (+) True mdfi
XM_026935267.2 mRNA upstream 112770 7549880 ~ 7593458 (+) False mdfi
XM_034314287.1 mRNA upstream 165032 7408835 ~ 7541196 (+) True foxp4
XM_034314289.1 mRNA upstream 165032 7408835 ~ 7541196 (+) False foxp4
XM_034314288.1 mRNA upstream 165032 7447853 ~ 7541196 (+) False foxp4
XM_026935600.2 mRNA downstream 21650 7855844 ~ 7896743 (+) True si:ch211-86h15.1
XM_026935175.2 mRNA downstream 140397 7974591 ~ 8026929 (+) True lrrn2
XM_034313980.1 mRNA downstream 141324 7975518 ~ 8026929 (+) False lrrn2
XM_026935269.2 mRNA downstream 416331 8250525 ~ 8260663 (+) True csf1a
XM_026935270.2 mRNA downstream 416344 8250538 ~ 8260663 (+) False csf1a
XR_003403967.2 other upstream 926870 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 3237054 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 6207741 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 6208601 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 6841340 863338 ~ 864888 (+) False fbxo42
XR_004580199.1 other downstream 667444 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 667444 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 2678477 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 2930080 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 2934513 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile