RNA id: XM_026935575.2


Basic Information

Item Value
RNA id XM_026935575.2
length 3495
RNA type mRNA
GC content 0.47
exon number 23
gene id acap3b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6406770 ~ 6464866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCtcgttttttttctatttccagTTCTGTGTGAATTATTTCCTGCTCTTGACCGAGGAATCCTTCTATTCATTTATGGATCATGCTAGTTTGTTGCTGTCTGCCTGTGTTCTGTCCCCTGCTTGCATCTCTGACAACAATTCATGGATTGAACAGATCCTCTTTGACCAGGCCCAGAGGTCCATTAAGCAGCAACTGCACACTTTTGTCAAGGAGGATGTGCGCAAGTTTAAGGACACAAAGAAGCAATTTGACAAGGTGCGGGAGGACATGGAGATAGCACAGGTGAAAAATGCTCAGGCTCCTCGCAACAAGCCACACGAAGTGGAAGAAGCCAGCAGTGCACTTATCGTGACCCGGAAGTGTTTCCGACAACTCGCCCTCGACTATGTACTACAGATCAACGTTTTACAGGCGAAAAAGAAGTTTGAAATCCTAGACTCTATGCTGTCCTTCATGCATGCACAGTACACGCTGTTCCAGCAGGGATACAACCTTCTGGATGAGCTCGACCCATACATGAAAAAGCTTGCTGCTGAGCTGGATCAGCTGGTGATCGACTCGGCCATGGAGAAGAGAGTGATGGAGCACCAGCATGCCATCATCCAGCAGCGGACTTTGATGCAGGACTTCGCCTGTGATGATTCCAAGGTGGAATTTAATGTGGACGCCCCGAATGGGATTGTGATGGAGGGATATCTGTTCAAGCGATCTACAAATGCTTTCAAAACATGGAATAGGCGGTGGTTCTCAATACAAAACAGCCAGCTTGTCTATCAGAAGAGGCTTAAGGATGCTCTTACGGTCGTTGTAGAGGACTTGAGGCTTTGTTCCGTCAAACCTTGTGAGGATATAGAAAGGAGGTTCTGCTTCGAAGTGGTGTCACCTACAAAAAGCTGCATGTTGCAAGCCGAGTCTGAGAAGCTGCGACAGGCCTGGATTCAGGCTGTGCAGGCCAGCATTGCGTCAGCCTACAGAGAGATCACAGATAACTACTATATAGAGCGTTTGGACAGAACGGCGTCTCCCTCCACCAGCAGCATCGACTCGGCCAGCGAGCCACGGGAGAGGAGTGTGAGGGGGGAGAGTGTCCTGCAGAGGGTTCAGTCTCTCCCTGGAAATGAGGTGTGCTGTGACTGCGGCCAGGCCGAGCCACGCTGGGCCAGCATCAACCTGGGCATCCTGTTGTGCATCGAGTGCTCTGGCATCCACAGGAGTTTGGGTGTACACTGCTCAAAGGTGCGCTCTTTAACACTGGACTCCTGGGAACCCGAATTAATGAAGTTAATGTGTGAGCTTGGGAACACGGTAATTAATCACATCTACGAGGGAGCCTGTGAAGAAAGAGGTCTGAAAAAACCTGGACCCAACAGCTCGAGGCAAGAGAAAGAGGCCTGGATCAAAGCTAAGTATGTGGAAAGGAAGTTTCTAAAGAAAATGTGTGGCTTAGAGGCGCTGGTCGAAGGTGGCAGGAAGTCTCATCACTGGCACGTGAAAAAGTGCAGAAGAAACAACAGCGCCATCGGAGCACCCAAAACTCGACACAAATACAGACATGATGGTGGAAGTGTGTCACCAGCTAACTTATCTGCAgCTGCTGCAGCGGCCAAATTCCGCAGAGAATCACTTTTCTGTCCCGATGAACTGGACTCGCTTTTCTCCTACTTTGACACTGGCTCCGGGCCCCGCAGCCCCGCAGGTCTCAGTAGTGACAGTGGTCTTGGCGGCAGCACAGACGGCAGCACTGACATCCTGGTGTGCGGCTCAGTGGTGGACAGTGTCACGGAAGAGGAGTGTGAAGACTCAGACGAATCCAGCGGGGAGGTGGAGGTTGAGCAAGAGGCATCAGACCTGGAGGACATGCGGGAGCTGCATCCCAGCGCGCTGCTCCATAAAGCCTCACAAGCCCGGAACTTGCCTGTCATGGCTGAGGCGTTAGCACACGGAGCAGACGTCAACTCCATTAATGAAGAGAACGAGAGCAAGAGCCCTTTAATACAGGCTGTCACGGGGgGTTCTTTAATAGCCTGTGAATTCCTGCTGCAGAACGGAGCTGATGTAAATCAGAAAGATGCGAGAGGACGGGGCCCGCTTCACCATGCCACTTCTTTGGGCCACACAGGGCAGGTGTGTCTGTTCCTGAAGCGAGGAGCGTCTCAGACGGAGGTGGATGAGGACGGTCAGGATCCTTTGAGCATTGCTGTGCAGGCGGCTAACGCAGACATTGTGACTCTGTTGCGGTTGGCTCGGATGAACGAGGAAATGCGCGAGGCGGACGGCCCCCTCGGACAGCCAGATGCCAGTTTTCCTCAGAGTCCTCAGCGGGTAAAGCAAAAGGAAAGAATATCACCACGGTCAGTGAGATCATTCGGGAGTTTCCGCACGTGGCTTAACGCAAGTCAGAAAATGTGAGCAGAGTTTGGTCCTCGAGTCAAGCTGAGCTGTTTGTGATTTTTCAGATATTCATGAATGTCACTGCTCCATTTTACACTATTAGAAAAAAAGGTGAAGTGTATAACCGCTGAGGTTCTTTCAGGTTGTCCTTCagattgttttggtttttcagtcagaaaaaaaaccagaatCCAATCAGAATCCAATCTTGCTTTGTTCTCTTCACAAACCAAGAACCATTAACCACCCAAAGAACCAgttttcctaagagtgtatgTAATGAGTGGATAAAAGCAATTCTGTGAAACTGTGATGAGGAATGTTAATGGCTATTTTATGGCttgtatgttgttgtttttttctcatttctgaaaTGGTTTGTGTCAAAATATTAGACTCTGCAATGAAATATATGACTAAAGTTATGTTTCAGTAAAGAATTGCATTTGTGCACATACACTATAGCATATTATGGACCAGTCCTCTGTCATGTAATATTATAGGGTCAGGTTTATTTATGTGTGAATTTTTCCAAACCACAACAATTTGTCTTTTCTATTTATACTGCTGTGCATGCTATTTGCTCAAACTGGCCACCTGGCCATACATGATACATGATTACTGTGTTGTCTATCTGCAAGAGAGATGCATCTGTTCCTGATACTGTGTTTGTTCTATTTgttattgaataaaataaatggaacaTGACAAGGAATGTGTACACTAAAGCAAGAAGAAGAGCAGCAAAAACAGTAAAGCCCCAATCACGAACGATCCACAGAAAAGTCCTGAAATGGCAGTTTTCATGAATTGCAAGGCGTATCGTATATCATGGTAACGTTATTTTTAACAGGgcagaaaccagagaacctggaggaaacccatgcgtACACTGAGAGAACATTCGCAGAAatgccacacagacagtaacctgtgGTTTTCCCAAATTCCAATAACGtgggtttttttattattattattattattattattattattattccacttAGGAAGAGCTGTTATGCAATTCCCATTCcaaatttttttcagttgtcattatggagtgttttttttttcaattcccATTCCAAAGTGTTTCCCC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU359315 lncRNA upstream 89659 6350192 ~ 6351096 (+) True G303181
TU359310 lncRNA upstream 147006 6200446 ~ 6293749 (+) True LOC113539422
TU359311 lncRNA upstream 147006 6200446 ~ 6293749 (+) False LOC113539422
TU358684 lncRNA upstream 859776 5577633 ~ 5580979 (+) True G302585
TU358685 lncRNA upstream 879231 5560613 ~ 5561524 (+) True G302586
TU359549 lncRNA downstream 33218 6498084 ~ 6502636 (+) True tmem167b
TU359550 lncRNA downstream 33218 6498084 ~ 6502324 (+) False tmem167b
TU359641 lncRNA downstream 170991 6635857 ~ 6659338 (+) True G303404
TU359680 lncRNA downstream 326452 6791318 ~ 6793226 (+) True G303437
TU359917 lncRNA downstream 402852 6867718 ~ 6870772 (+) True G303645
XM_026935384.2 mRNA upstream 56352 6376435 ~ 6384403 (+) True ddx19
XM_026935182.2 mRNA upstream 72635 6366056 ~ 6368120 (+) True si:dkey-33m11.6
XM_034313989.1 mRNA upstream 77070 6357452 ~ 6363685 (+) False LOC113539438
XM_026935179.2 mRNA upstream 77070 6358707 ~ 6363685 (+) True LOC113539438
XM_034314434.1 mRNA upstream 95500 6335834 ~ 6345255 (+) False dnajc16l
XM_026935234.2 mRNA downstream 451 6465317 ~ 6469788 (+) True LOC113539488
XM_026935394.2 mRNA downstream 8034 6472900 ~ 6486160 (+) True si:ch211-160o17.4
XM_026935395.2 mRNA downstream 8035 6472901 ~ 6486160 (+) False si:ch211-160o17.4
XM_026935219.2 mRNA downstream 22442 6487308 ~ 6489907 (+) True b3galt6
XM_026935172.2 mRNA downstream 33194 6498060 ~ 6502332 (+) False tmem167b
TU358141 other upstream 1971581 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 4942268 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 4943128 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 5575867 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 5595944 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 199208 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 2036772 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 2036772 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 4047805 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 4299408 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile