RNA id: XM_026935591.2


Basic Information

Item Value
RNA id XM_026935591.2
length 2735
RNA type mRNA
GC content 0.45
exon number 10
gene id inavab
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9316398 ~ 9335379 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTCTCCTTTCAGAGTCCTTCTTACAACAAATCTGGAATGCGATGGTTTGGAAAACGTGGATGcgatataactgtatataactgtatgtTCCAGTGTGAAACCTGAAAGCTTGAGTGTGAATCTGCGTTTGTTATGAGTGCAGGTGTGTTTAGACTTGAAGAGTGCCAGTCTTGCAGACATGGAGGCCAAAGAGGAGATCAGTGACACAGACAGTGGGATTATTCTGCATTCTGGACTGGACAGTCCTATTATTGTAACCAAGGAAGTGGGTACACACACTCGGGCTGTGAAGCTAAAACGGCAGTCATTACAGGACAGGCTTGAGCTTTGTATTCTGGAGCTGAAGAAACTCTGTATTAGAGAGGCTGAGCTCACTGGACATTTGTGTTCTGACTACCCTCTGCTGCCTGGAGAGAAACCTCCGCAGATACGCAAACGCATTGGGGCTGCTTTTAAGTTGGATGAGCAAAGCATTCTGCACAGAGACGAGGACTCAGAGCTATGCTCAGTGGAAGCTAAGCTGGCCCTGCAGCAACAGATCTACACAGCAGCGCACAGGCTGTGCCATGAAGAGCATCTGAGCAAGGCAGTAAAGAAAAGCAGAGTGCAGCAGTGCAAGCGTGAGGAGCAGAAACTTAAGGAGCTCCAAGATTCTTTATTCCAACTACGTCTCGAATACGGCCGCTCCTCACCACGACCTTGTATAATCACACAAAAACATCATGCCACTTCGGATAACAGTTCATTGTCAGATTCTGCAGTGTTGGATGAAGAGCTGACAAGCCAGTCATCCCAGGCTTCCTCTGAGCCCCCTTCTATTACAGAGCTTCATTCTGTGGCCCCAGGCCCTTCCCTTCTTTCTCTAAATCCCTCTGGTCCCCTGCTTCATCCCCCTGAGCCAAGACCCAGCCCCCATCAGCCACCTCTCGAGCATTTGCACCTATGTCATGGCCCCTCGCTGGAGTATGACCCTGCCCCAATCCAGAATTCCCCTTGGAAGGAGTCCAGCCTTGATCAACCTTACCAGAAACAGAAGAAGTCTCACTCCAGTAGCACTAGCTCCAGTCCTGCCTCCTGTTCTACATTGCCCCCACTGGAAACTTGTTTAGAAGAGGTAGACCTGAAGCTGCAGATACCCAAACATACAGCACCgagacacacacagtccagCAGTACCCCCTCTACCCCAGAGATGCATCTTCGAAGAGTACTGTCCCTCAGAGTTCCCAGTAGTGATCCAGCAAATAATGCAGAGCGTGACAGAGGCCGGTCGCGTGGTCCCAGAAGACGACTGACCGATGTTATTTTGAAGACACCAGAGTACTCCCCTATAACGTTGGCTGTGGGAAACCCAGTACACCACTCCAGCTCAGAGGACAGTAACTCTGAGCACTCGTCGGCTCCTTCCTACACCAGCTCACCATGCCAGGAGCTTTTGGCTGAGCCAGAGCAGCTATGTCAGGCACAGCACAGATACCACTACTCTAATCACAGCTCGCCGTCCTATGTAACCCACAGGTACTACAAAAACTCCTCGGCCCAGCTTTCCCCCAAGCTCTACAGAGGCTATATAGATGAGGGAAGGGGCCATGATATGGACTTGAGTAGAATGTATATCAGGCACCAGCCTTCTCCTTGCATCAATGGTCACTACGAGTACTGGTACGAAGAACCGCCACTATACCAACAAGGGGGCAGACTGATCCCCCACCACCTGAAGCTATCCCGGGCCCCATCACTCAAAGAGTACCCCCAGCACCAAAGCAGAGCTCTACCACGACAGGTGGTTTCAGACGAGCTGAAGTCATGGCATCAGCGCTGTCAGCTACGGCCACGGTCTCTAGACAGACAGGGTGCTGTGCGCATTCGGAACCTGCCCTTACACGAGTCGCCACTCTCACATCACCATGACATCTATGATCAGGTCCCCCAAAGGACTGCAGACAGAACACCAGTGAAATGGTATGAAGAAGACGACCAAGAGATTGTCAGCCAGGTGTAGCAAAAGGACCCTCACTGACAAAAGTcctatttatgttttaatttattgaataattaGATGAAAATATCAGTGGTTGTATCTGTAGTTTGGCTaagcttttatattttcaaaagcatttttatataaaagacattacagtaattttttttttactttttgaactTGTTGTTGAAACAATGTTGTTAACagaatagattttatttctatatttctttttttttctttttttttaacaaactgtAATTTGTTACTAAGAGTAGCTTTCATGCGTTACATTTTCCCTTGTCATTCTGTGTTGCTACTGATGCAAATAAAATGGAGAGGAGTGTGGTCTTAGAAATCTCAGTGTAACTCaagatgttttattgttttatttgtgtgtttattttgttttttaatttaaatttaaattttactgTTGCTGCCCATACACCCAAGTGTACAGTATGAGacatttttctgaaaagttttaGGTGCAATGAGGACATTtgacaaataaaggaaaacaCATCATATAGTACACTGCATaattattagcacccttcataaaaatgagtaaaGATTATCGTgttaaaacattcaaataatATAAGAAAGCATGTATATTTATTCTAACATAGAATATGCTCATAAGAACTGCTTTCTTAAATAATAGTATGTTCTCTCCAAAACATATGTGCCAAAATTAGACAACcattaagaaatattttaaataaatgcaaacaaatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403966.2 lncRNA upstream 3607 9311720 ~ 9312791 (+) True LOC113539732
TU361352 lncRNA upstream 18820 9297369 ~ 9297578 (+) True G304898
XR_004580247.1 lncRNA upstream 295146 9019600 ~ 9021252 (+) True LOC113539427
XR_003403926.2 lncRNA upstream 295146 9019600 ~ 9021252 (+) False LOC113539427
XR_004580248.1 lncRNA upstream 299404 9005903 ~ 9016994 (+) False LOC113539633
TU361378 lncRNA downstream 24951 9360330 ~ 9365833 (+) True G304917
TU361385 lncRNA downstream 60196 9395575 ~ 9395926 (+) True G304924
TU361387 lncRNA downstream 68672 9404051 ~ 9404267 (+) True G304926
TU361388 lncRNA downstream 90664 9426043 ~ 9427519 (+) True G304927
TU361416 lncRNA downstream 200921 9536300 ~ 9551524 (+) False shisa4
XM_026935213.2 mRNA upstream 79069 9228442 ~ 9237329 (+) True syt6b
XM_034314443.1 mRNA upstream 390185 8918438 ~ 8926213 (+) False nfs1
XM_026935681.2 mRNA upstream 390185 8918439 ~ 8926213 (+) True nfs1
XM_034314444.1 mRNA upstream 390185 8919186 ~ 8926213 (+) False nfs1
XM_026935433.1 mRNA upstream 407867 8902519 ~ 8908531 (+) False rbm39a
XM_034314482.1 mRNA downstream 11709 9347088 ~ 9350893 (+) True rnpep
XM_026935410.2 mRNA downstream 23440 9358819 ~ 9379985 (+) True LOC113539578
XM_034314301.1 mRNA downstream 23440 9358819 ~ 9379985 (+) False LOC113539578
XM_026935714.2 mRNA downstream 72146 9407525 ~ 9409888 (+) True rabif
XM_026935711.2 mRNA downstream 74873 9410252 ~ 9435881 (+) False kdm5ba
XR_004580199.1 other upstream 757487 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 757610 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2537040 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4847224 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7817911 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1177292 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1428895 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1433328 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1433328 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 1776360 11111739 ~ 11112518 (+) True G305727

Expression Profile