RNA id: XM_034314368.1


Basic Information

Item Value
RNA id XM_034314368.1
length 2459
RNA type mRNA
GC content 0.50
exon number 15
gene id srpk1b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6536593 ~ 6570973 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagtgtgtgtctcttGCTGGCATATCTCAGTGTGCAGAGCGCACAAGCTGCAGCCTCTGGTTCATGGCTTTGGCTCTCACCTGCGAGCCTTGGCCACCTCCGTCTCTCATGGGCATCCGAGCGTCCTGTAGACCTGATCCCCACCCACGGGGAGCTGCCCAGCCTGACTCAGCTCTGCAGGAGCAAGAGGAGGAGATCTTGGGCTCTGACGATGAAGAGCAGGAAGATCCCAATGACTACTGCAAGGGTGGTTATCACCATGTGAAGATTGGTGACCTATTTAACGGCCGGTACCATGTGATCCGCAAACTGGGCTGGGGGCATTTCTCCACTGTGTGGTTGGCATGGGACATCCAggGAAAGCGCTTTGTGGCTATGAAGGTAGTGAAGAGTGCAGAACATTACACTGAAACAGCTCTGGATGAGATCAAGCTCCTGCGCGCGGTGCGAACATCGGACCCAAACGACCCCAGCGGAGAGAAAGTAGTGCAGCTGCTGGACGACTTCAAGATTTCAGGTGTCAATGGCACTCATGTGTGCATGGTTTTTGAGGTCCTTGGTCACCACTTGCTCAAGTGGATCATCAAGTCTAACTACCAGGGTTTGCCCTTACCCTGTGTTAAAAGCATCATTAGGCAGGTTTTGCAGGGTCTGGACTATCTGCACACAAAGTGCAAAATCATCCACACAGACATAAAGCCAGAGAATATCTTAATGACCGTCGATGAGTCGTACATCAGGAAGCTGGCGGCCGAGGCTACGGAGTGGCAGAAGTCTGGAGCTCCTCCACCATCCGGCTCGGCAGtaagCACAGCGCCAGCTCCGAAACAGATGGTGAAAATGTctaagaacaagaagaagaagctgaagaagaagcagaagcgGCAGGCCGAGCTGCTCGAGAAACGCATCCTGGACATCGAAGGACTAGAGAGAGCGAACGAAGGGGGCGAGGATGAGGAGGACGAGGAAACAGAAACCCCTGACACAACTCCGTCAGTAACCAACAGTCAGACTCTGCAGGAAATCACAGCTGAGGCCACCCTGGATGCAGTTCCTGAACCCTGGTCGCAGCACAGAGAATGTGCCATGGATGGAAACTTCAGCAGCCAGCACCCTGAGGATGAGAAACCTGCCGATGTGCAGCAGCAAGAGAAGGAGGAAACTCCCATCAACCCTTACGGCAATGTCACAGGAGAGGCGGAGTCCCAGCCCATTAACCCCTACCCAGTGTGCAACGGGACCACACCCAGCGAGCCAAGCTGTCCTGATGTTAAGCTTGCAGCAGGGAATCTGTTGGTGAACCTGCTAGATCCACTGAACACTGACAAGATCCAGGTGAAAATCGCTGACCTGGGCAACGCCTGCTGGGTGCACAAACACTTCACGGATGATATTCAGACACGGCAGTATCGTTCTCTGGAGGTGCTAATCGGTTCAGGCTACAGCACACCAGCAGACATCTGGAGCACAGCATGCATGGCGTTTGAGTTGGCGACAGGGGATTACTTGTTTGAACCGCATTCCGGAGAGGATTACTCCAGAGATGAAGATCACATTGCGCTGATCATTGAGCTGCTGGGCAAAGTTCCTCGCAAACTCATCATGAATGGCAAATATTCAAAGGAGTTCTTCACTAAGAAAGGTGAGCTGAGGCACATCACTAAGCTGAAGCCGTGGGGGCTTTTGGACGTCCTGGTGGAGAAGTACGAGTGGCCGAGGGAGGAGGCGCAGAGCTTCAGCAGCTTCCTCCTCCCCATGCTGGATCTGATTCCCGAGAAAAGAGCTACAGCTGCCGAGTGCCTCCGCCACGCCTGGATCTCATCGTAGTAgctgaaaggaaatgaaaaaaaaaaaaaaaacaacaaacacgtACACAGATACTCACCTCTGATAAAGACTAACAGTCTGGTCAAATGGCACACATCGGTTCATGATGGAACATGAAGCGGTCCAATCAAACAGATGtaatatctatttatttcttGTAATGTTCCTTTCTTATGTACCGGGTGCAGTTTGATGTATCCTGTCGTTTTGAcgcttttttcctctcttctgtGTGCCGACAGCATCTAACATCATGCTTGTGTTCGTATGAAGGGTTCAATAGCAGTTTAACAATACAGGTAAAATTTTTCTGTACATTTGCTTTAGTCGTAATCAGTCTTtttgacagacagacatgctTATTTGGCAATACTGAAGGAAGCACAGATGTCCTGTCTCTGCTGTAAAaaggttggttggttggtttttttttttttgttgttctttgtgGATGGTTTTCTCATTACAGTGCAGGCTGCAGGAGACGTATGAATGATTTAGGCTGACAGTGATGGCCTGGCTGTAAATGGACATTTACTGTATAAACAGATGTGAATTTTCAGCTTAATGATTTCCAGCTGTGCCTGCGTCACTTTGTcatatgtaacaaaaaaaaaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU359549 lncRNA upstream 48679 6498084 ~ 6502636 (+) True tmem167b
TU359550 lncRNA upstream 48991 6498084 ~ 6502324 (+) False tmem167b
TU359315 lncRNA upstream 200219 6350192 ~ 6351096 (+) True G303181
TU359310 lncRNA upstream 257566 6200446 ~ 6293749 (+) True LOC113539422
TU359311 lncRNA upstream 257566 6200446 ~ 6293749 (+) False LOC113539422
TU359641 lncRNA downstream 64884 6635857 ~ 6659338 (+) True G303404
TU359680 lncRNA downstream 220345 6791318 ~ 6793226 (+) True G303437
TU359917 lncRNA downstream 296745 6867718 ~ 6870772 (+) True G303645
TU359932 lncRNA downstream 327517 6898490 ~ 6900530 (+) True G303658
TU360012 lncRNA downstream 423872 6994845 ~ 7001112 (+) True LOC113539683
XM_034314058.1 mRNA upstream 17868 6506231 ~ 6533447 (+) False mapk14b
XM_026935171.2 mRNA upstream 17868 6506322 ~ 6533447 (+) True mapk14b
XM_026935172.2 mRNA upstream 48983 6498060 ~ 6502332 (+) False tmem167b
XM_026935219.2 mRNA upstream 61408 6487308 ~ 6489907 (+) True b3galt6
XM_026935395.2 mRNA upstream 65155 6472901 ~ 6486160 (+) False si:ch211-160o17.4
XM_026935314.2 mRNA downstream 18069 6589042 ~ 6651029 (+) True kif21b
XM_026935734.2 mRNA downstream 92995 6663968 ~ 6779358 (+) True cpne5b
XM_026935735.2 mRNA downstream 92995 6663968 ~ 6779358 (+) False cpne5b
XM_026935532.2 mRNA downstream 311415 6882388 ~ 6885522 (+) True LOC113539624
XM_034314086.1 mRNA downstream 332366 6903339 ~ 6917985 (+) False zgc:113307
TU358141 other upstream 2082141 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 5052828 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 5053688 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 5686427 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 5706504 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 93101 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 1930665 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 1930665 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 3941698 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 4193301 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile