RNA id: XM_026935600.2


Basic Information

Item Value
RNA id XM_026935600.2
length 2051
RNA type mRNA
GC content 0.46
exon number 10
gene id si:ch211-86h15.1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7855844 ~ 7896743 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGAATGTATTTCTTTCCAACACTAGCACTGcaagctgaaagaaagaaagaagaaggacGATAGTAAATCCAGTCCATTGTTGTCATTAAGTTAGCTGGTCATTTGACCGTTTTTGCAAGACTGCTGCACATCACCATGACAAACCTGCAGTCCTTAAGCATTTTCCTGACGGAACGCTTAATGCTGGCAGCTCAGGAAATTTTCAAGGCTGTGGAAGTTACCGTTACTGAGTACCACGACGAAATTTCACGCTCCAGACAAGAAAACGAGCTGCTGAAAAACAGACTGCTGGAGGCAGGTATCCAGGTTTATCCAGAATTACAGCCGGGCCTGTCTGTCTTCCATGGAGAGCCCTGTGCTGGATCTGAGAGAGGAGATCCAGGTGAGAAGATTCAGGTGAAGCAAGAGCCCAGTGCTTCAAGGGAAGAGCCTCGAGTTCCCCCTCCTCAAACAAGCGTGCCTGAAGAACCCGTTTCCCCACCTGCATGTCTAGAAGATGAACAGAGAATTGAAGAAATGCTACAACCACAGATGACAGAGAGCAGTGCGAGTCCTTTACTCCAGGCTCATCACTGTATGCAGATTAAAGAAGAAACCGACGAATCAAAGTCTGCTTTGGGAACAGAGATTTTCTGCGTGTCACAGAGCAGCACTTCGGATGATCCAAGCAGTGCTGTTGCTTCCAATCATTCCAGTGGGCTTGAGACTGAACTGGACGGACTTTCCTCAATGCACAATGCCTCTGAGCTTCGATTAACGAGCAGAGTGAACGTTGGTCAGCCTAAAACATGTGTTAATTATGATCCAGCGGAGCAGGATAAAGAACTCCAAAGGAGAGAAAGAATGTTCCACATGGTTAAATTCTCAGGAATGGAAACTGTTGCAGTTGTGCCAGCTGAGTGGTATAATGCTGGAGAGACACTTTGGCCAAATTATAAAACAGACAAACGTATGGAAAGAGCAGTTCAACGAAGAGAGACGCCTGGCGAAGACTGGGACCGCTATAACTGCACTGTCCTAAAGACGTATGACAACTATTCAGCAGCACACCAGGCTCTGAAATCCTTATCCTGCAGCACTTCTGATGTGCAGTcggatgaaggggaggaggtgaACGCAAAACCCAAGCCAATTCATTATATTGGAGAATCTGATGTTGATAGTGATCCGAATGAGTCAAGGACCCCTGTGAAGAAACAAAGAACTCATCAAAAAGTTCACCGATTTCCATCTTCATCAACACAAACTGTGGCTTGTCCAACCAAGCCTCATTCCACGGCCTCTAAAATGACTCCTCCACTACTGGCTCCTCCTGCATCAGTTATATCCTGTCCTGAAATGAACACAAGCAGTTGGGAGGCTCAACTTCTTTTCCATCCAACTTGTAGAGTAAGGACAGGAACTGGACCAATTCTATGCACTGCTGCTCAGCTCCATATGTTGACACTCATGGAGCAGGTTAAGCATGAACAAACCCAAATACTGGGAATGCTGAATGGACTGAACACCAAACTGGATGCAAATACAGAACTCCAGAGCTTTTTTGACACACCTGAGGACTTGAAATTCCCACTGGATACCATAGAGGATGTGGAACATTTCGAAGCCTGGCTCGCTGAAGCCACAAATGCTGGATCCAAAAATAACTTGATAAAAATTCTATCAACGCTGGGAGGGCAAGATGTCAAGAAGGTGACCTGGAACATCCTGGctcatattttcagtgacaACGTTAGCAAAAAAATCTGCTGGAAGGGGGCCAATCAAAAGCTGAAATTCAGTGGAATGAACACAAAGGGGCTTCTTATCCGAGCTGTGCGAAACTGCAAGGTAAGCAGTAATGCCACTGAAGAAGAGATCAGCAAACACGCCATTCGTTGGTTCAACCTGGCATCAGATCGTGGAGGTGGACGCAAAGAGCGACACAGgTTGTCCACAGCTGGAAGAACAACGGATGAACAAAATTCAGAATAAAGTGTTCAGTATAAAGTTTGTGTTGTTACGTCCCTGAATGTATTTtgattttctgtctctgtttccgtctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU360300 lncRNA upstream 150601 7704216 ~ 7705243 (+) True G303966
TU360208 lncRNA upstream 407105 7437455 ~ 7448739 (+) True G303892
TU360207 lncRNA upstream 409658 7420706 ~ 7446186 (+) True G303891
TU360205 lncRNA upstream 435266 7415415 ~ 7420578 (+) True G303889
TU360102 lncRNA upstream 750315 7101770 ~ 7105529 (+) True G303806
TU360545 lncRNA downstream 6612 7903355 ~ 7903564 (+) True G304193
TU360554 lncRNA downstream 77883 7974626 ~ 7983380 (+) False lrrn2
TU360645 lncRNA downstream 263938 8160681 ~ 8191673 (+) True G304286
TU360648 lncRNA downstream 265056 8161799 ~ 8165909 (+) True G304289
TU360658 lncRNA downstream 321125 8217868 ~ 8218135 (+) True G304299
XM_026935544.2 mRNA upstream 21650 7706228 ~ 7834194 (+) True ppfia4
XM_026935545.2 mRNA upstream 21650 7706228 ~ 7834194 (+) False ppfia4
XM_026935549.2 mRNA upstream 21650 7706228 ~ 7834194 (+) False ppfia4
XM_026935548.2 mRNA upstream 21650 7706228 ~ 7834194 (+) False ppfia4
XM_026935547.2 mRNA upstream 21650 7706228 ~ 7834194 (+) False ppfia4
XM_026935175.2 mRNA downstream 77848 7974591 ~ 8026929 (+) True lrrn2
XM_034313980.1 mRNA downstream 78775 7975518 ~ 8026929 (+) False lrrn2
XM_026935269.2 mRNA downstream 353782 8250525 ~ 8260663 (+) True csf1a
XM_026935270.2 mRNA downstream 353795 8250538 ~ 8260663 (+) False csf1a
XM_026935247.2 mRNA downstream 584352 8481095 ~ 8561702 (+) False nfasca
XR_003403967.2 other upstream 1076486 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 3386670 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 6357357 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 6358217 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 6990956 863338 ~ 864888 (+) False fbxo42
XR_004580199.1 other downstream 604895 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 604895 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 2615928 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 2867531 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 2871964 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile