RNA id: XM_026935605.2


Basic Information

Item Value
RNA id XM_026935605.2
length 2201
RNA type mRNA
GC content 0.43
exon number 15
gene id gnl3l
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10102314 ~ 10138886 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGACTTTTATGTTGCATTAGATTCTTTAGTTTTGTAGGAATTTTCACGCTGCTGTTACTTTTTACACACGTGTGAAGCCATGCCCAAAGCTAGACAGAAGCGAGCAAAAAGACTGGGGTTCTGTGGTAAAAAGGCCAAAGCCTTTGAACATCAGACAAACccaagaggaggaagaaaagatcCTGCCTTGCCCAATGTTCGTGACTTCAAAGAACACAATCAGAAGCAAGCTGAACTTCGAAAAAAGAGGCTGGAGGAGCAGCACCAGAGGCAGCAGCTGTCCAGGGATAGGGAACTTATGAAGAGAAGGAGTCTTGATATCTTCCAGAAAGACATCCAGGAGCGACAGCGAGAGTTTGAACAAAGGgaaattgaaatgaaaaatttgGAGAAACATGTTAGTTTTGAAAATGAGAATTCAAGGAAGACGTATtacagagaatttaaaaaaGTAATTCAAGTTTCAGATGTTATTTTGGAGGTTTTGGATGCTAGAGACCCGTTAGGCTGTCGCTGTCCTCAAGTTGAGCAAGCTGTTGTCCAGAGTGGAGCCAATAAGAAAATTGTTCTTGTTCTTAATAAAATTGACCTGGTGCCCAAGGACATTGTGGAAAAGTGGATTAAGTATCTTCGCAATGAGTTCCCTACAGTGGCCTTCAAAGCTTCCACCCAGCAGCAGAACAACAATTTGAAACGTAGCCGTGTGCCTGTGAGCCAGGCCACTCAGGAGCTCCTGGGCAGCAGTGCATGTGTGGGGGCTGACTGTCTCATGAAGCTGCTCAGCAACTATTGCCGCATCCAAGACATTAAGACCACCATAACCGTAGGAGTAGTTGGATTCCCTAATGTTGGAAAGAGCAGTTTGATTAACAGTTTGAAGAGGGCACGAGCTTGCAGTGTAGGAGCTACACCTGGTGTAACAAAGTGTCTACAAGAGGTGCATATAGACAAACACATCAAGATTTTGGATTGTCCTGGTATTGTCATGACATCATCAACCAGTGATGCTGCTGTGATTCTTCGGAACTGTGTAAAAATCGAACAGTTAGTCGACCCAGTTCCAGCCATTGAAACAATTTTACGACGCTGCAGTAAGAAACAGATTATGGAGCATTTTGGAGTTCCAGACTTTCACACGACACTCGACTTTCTGGCACTGCTTGCCCATCGTCAGGGCAAGCTGAGAAAAGGTGGGCTGCCTGACAGCGACCAAGCTGCCAAGAGTGTTCTCATGGATTGGACAGGAGGACGTATCAACTACTTCACACATCCTCCAGAAACACATGTACTACCAACACATGTTAGTGCTCAGATTTTAACTGAGATGAGCAAGGAGTTTgactgggatgaactggagaaGGGCAACCAGGAGACCTTAGCTGaATGTAACCCAGGAAATGTTGAGATGGCCTTTTGCATGACCACATCAGGAATGACTGAAATGGGCCATGAAGAGCCAGCAGAAATAGAATCCTTAGACATAGACTCCCAACACACATCGGAATCTGTGGATGCAGATGACGATTCAGAGTTTGGACTCATGACTGTCGAACTCCAAGCTGGAAAAACAAAATCTGGTGCAGTGGGGGTTCCGGCTCCCAAGCCTGTTGACTTAGATATTCTAGATGTTGACCCACTTCAGCAAGGCCAGGCACTTCTGGCTGCTaacaagaaaaggaagaagCAGCAAAAAAGAGCAGACAAACTTGCCACGAAACTCTCAGATTCTCTCACGTCAGCCATGAATTTTGCCTTTCTGGACAGCTGAAATTATGagaaacaagtagaactcgacACCAGCAGTGTGAAATGCCTCTCTCACCAAAAAGTCTGGTGGTTCTTTTTGTtaatttgtatgcctcaaataccattaaaatatacttcaaacaggaaggaagcaaCTGAAGatctatttcagacatttaaccTGGTGTGACtgtgaccctgtttggatcgaTTCCAAAATCTAACCAGTTCATCTGCTTACAAACAGTAATTTCATACTGATAAATCCTACAAAGGCTAAACCATGCTTTAGGCATGTATATTTCAGTGATGTACATGTGTTAAATTCTAATAAACATAACTGCTCATTCCTTATGTACATCTCTCTTGATGTATCCAAAGTAATGTACAGAGATTCTGATTTTAAATGTTGGGGGAGTAAGTCAGTCCCTTCAAATACATTTGTTAAATTTTA

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005730 nucleolus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361752 lncRNA upstream 29846 10072249 ~ 10072468 (+) True G305232
TU361748 lncRNA upstream 33677 10068433 ~ 10068637 (+) True G305228
TU361738 lncRNA upstream 52875 10049224 ~ 10049439 (+) True G305218
TU361734 lncRNA upstream 67715 10034395 ~ 10034599 (+) True G305214
TU361706 lncRNA upstream 88773 10012543 ~ 10013541 (+) True G305188
TU361730 lncRNA downstream 402 10139288 ~ 10139730 (+) True G305210
TU361912 lncRNA downstream 91646 10230532 ~ 10232192 (+) True G305368
TU361934 lncRNA downstream 115004 10253890 ~ 10254274 (+) True G305382
TU361935 lncRNA downstream 115709 10254595 ~ 10255330 (+) True G305383
TU361944 lncRNA downstream 192857 10331743 ~ 10331947 (+) True G305392
XM_026935383.2 mRNA upstream 2792 10095530 ~ 10099522 (+) True LOC113539559
XM_026935607.2 mRNA upstream 529025 9568051 ~ 9573289 (+) True lmod1b
XM_026935611.2 mRNA upstream 550689 9536125 ~ 9551625 (+) False shisa4
XM_026935242.2 mRNA upstream 614285 9437233 ~ 9488029 (+) False ipo9
XM_026935543.2 mRNA downstream 141634 10280520 ~ 10289815 (+) False mon1bb
XM_026935542.2 mRNA downstream 141650 10280536 ~ 10289815 (+) True mon1bb
XM_034314339.1 mRNA downstream 141650 10280536 ~ 10289815 (+) False mon1bb
XM_026935673.2 mRNA downstream 629821 10768707 ~ 10773442 (+) True LOC113539694
XM_026932796.2 mRNA downstream 922122 11061008 ~ 11064101 (+) True ppcs
XR_004580199.1 other upstream 1543403 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 1543526 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 3322956 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 5633140 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 8603827 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 373785 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 625388 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 629821 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 629821 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 972853 11111739 ~ 11112518 (+) True G305727

Expression Profile