RNA id: XM_034314084.1


Basic Information

Item Value
RNA id XM_034314084.1
length 1804
RNA type mRNA
GC content 0.43
exon number 3
gene id prelp
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6925266 ~ 6933151 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAAAAAGAGTGAGGAAGGTTAAATTTCAGAGCAGTGATACCTTGCAGTGATACCTTGATTTCATGTGATGAAATCCAACAACAAGGTTCTTTTGACAAGGACGATGAAGGCTGAGCTAGGATACTGCTCtctacttcttcttctccttACCATAGATGTTTGGGGACAGCAGTCCAGACCCCGACCTCGACCAAAACCTCCCACCACCAGGAGGCCTCCCAAGAAAGAGCCAGAACCCAAGGAGCCCACTGACTTTCCTCCTGTTATCATTGGTCCACCTTCTTCTTTCCCAGACTGCCCAAGGGAATGCCTGTGCCCCGCTTCCTTCCCAAATGCCTTGTACTGTGAGAACCGAAACCTCCGCAAGGTCCCGGTCATCCCACCTCGCACCCACTATCTCTACTTGCAGAACAACTACATTGATTCAGTGACTGCAGACCCCTTTAACAATGCCACAGAACTCAAGTGGGTAAACCTAGGGAATAACCGCATTCGGTCTATAGAGAAACAAGTGTTCCAGAAGCTCCCAAACCTGCTGCATCTATATATGCAGAGGAACCTTTTAAAGGAAGTCCCAAGCAATCTGCCTGCTGGCTTGGAGCAACTACGACTCAGTCGTAATCAGATCTCAAAGATTGCTCCTGGAGCTTTCAACAAGATGAAGGACCTTGCTCTCCTGGACTTGCACCATAACAAGATCAGCGACAGCAACCTGGCCAAGAATATCTTTAAAGATCTTAAGAACCTTGTACAGCTTAACCTGGCTCACAACATCCTGAGGAAGATGCCTGCAAATATACCCAACAGCATTTCCCAGTTGTTCTTGGACAAGAACAACATTGAGGAAATTCCCCAGAACTATTTTAAGGACTTCTCGAACCTAGCCTTTGTTAGACTTAACTACAACCAATTGACTGACAAGGGCCTCCCAAAGATGGTATTCAATATTAGCACACTGCTGGATTTACACTTGGCACACAACAATCTGACTAGTGTTCCATTTTTCAACTCTCACCTGGAGCATCTACAccttaacaacaacaatatcgAGAGAATCAACGGAACAGAGATCTGTCCCTTTACACCCTTTACACTGAGTGAGGATGTAAATGATCCAGACCACGTGCCCAGGCTGAGGTACTTGCGGCTAGATGGTAACCATTTGACCCCGCCCATCCCATTGGACGTCATCATGTGCTTTAGACATCTCCACTCAATAGTGATATAGAGGACATCTGAAATTTTCTCTATGCACAGTGCTCCTGTTCACTTGACAGTACTGACTGAATTAACAGTACTATGGGAAACGCAAAGAAATAGCAATAGACGGTTGCTTGATAGCTTCAGGAATGTTTGTCTGAGCTTTGAAAAGCATATTTATTAAACTTCAAATAGGAACAACTGCTTTGAGCATGTCTGCATTAAAGGTACACATTTGATGTTATGTTCTTGTGATGCAACAGTATTAACTACAATTAAATATCTATGAAATGAAGGTGGATTAACAGACATGCAGTTTTTAATCTACATTGTAGTTATGAATAATGTACTGAAACAGATAAACTGCTAGTTAGATCACTAACCacttaggaacacctgtacacctgcttattcatgcagttatccaatcggtcaatcatgtggtagcagcacaatgcgTAAAGTcgtgcagatacagatcaagctTCTGTTAGTGTTCATggaacatcagaatggggaaatgtGATCACAGTGACTTTGTGGCATGTTTAGTTGGTTTGAgaatttctccaaaaaaaaaaaaaaaaactccagtgaGTGGCT

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU359932 lncRNA upstream 24736 6898490 ~ 6900530 (+) True G303658
TU359917 lncRNA upstream 54494 6867718 ~ 6870772 (+) True G303645
TU359680 lncRNA upstream 132040 6791318 ~ 6793226 (+) True G303437
TU359641 lncRNA upstream 265928 6635857 ~ 6659338 (+) True G303404
TU359550 lncRNA upstream 422942 6498084 ~ 6502324 (+) False tmem167b
TU360012 lncRNA downstream 61694 6994845 ~ 7001112 (+) True LOC113539683
XR_003403952.2 lncRNA downstream 62922 6996073 ~ 7001081 (+) False LOC113539683
TU360102 lncRNA downstream 168619 7101770 ~ 7105529 (+) True G303806
TU360205 lncRNA downstream 482264 7415415 ~ 7420578 (+) True G303889
TU360207 lncRNA downstream 487555 7420706 ~ 7446186 (+) True G303891
XM_034314086.1 mRNA upstream 7281 6903339 ~ 6917985 (+) False zgc:113307
XM_026935647.2 mRNA upstream 7281 6913250 ~ 6917985 (+) True zgc:113307
XM_026935532.2 mRNA upstream 39744 6882388 ~ 6885522 (+) True LOC113539624
XM_026935734.2 mRNA upstream 145908 6663968 ~ 6779358 (+) True cpne5b
XM_026935735.2 mRNA upstream 145908 6663968 ~ 6779358 (+) False cpne5b
XM_026935650.2 mRNA downstream 4867 6938018 ~ 6940764 (+) True il19l
XM_026935649.2 mRNA downstream 16784 6949935 ~ 6952787 (+) True il10
XM_026935653.2 mRNA downstream 280558 7213709 ~ 7218371 (+) False fam72a
XM_026935652.2 mRNA downstream 280586 7213737 ~ 7218371 (+) True fam72a
XM_034314011.1 mRNA downstream 280586 7213737 ~ 7218371 (+) False fam72a
XR_003403967.2 other upstream 145908 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 2456092 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 5426779 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 5427639 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 6060378 863338 ~ 864888 (+) False fbxo42
XR_004580199.1 other downstream 1568487 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 1568487 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 3579520 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 3831123 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 3835556 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile