RNA id: XM_026935649.2



Basic Information


Item Value
RNA id XM_026935649.2
length 1109
RNA type mRNA
GC content 0.40
exon number 5
gene id il10
representative True

Chromosome Information


Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6949935 ~ 6952787 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CCCGAGGATTGAGCGGCACGCTTACGAAAGGGTTAACACTGGTGTGACGAGATCTTCGAGAATGCTCCTGTATAGGTTCCTCCTGTTTGCTTTGCTGACGGCTTTGCTGCTTCAGGCTGCTCAGTGCAAGAGGACGATCTGCAAAGACAGCTGCTGCTCCTTCGTTGAGAAATTTCCAGTCAGATTGAAAGCGCTTCGTTCTTCATACGCCAAGATCCGAGACTACTACGAATCCAAGGATGAGCTGGACACCTCACTATTCAACAGAACAGTTCTTGAACACTTCAAAAGCCCTTACGGATGCAGTGTCATGAACGACATTCTGCATTTCTACTTGGAGACCGTGTTGCCTAGTGCCATCACAGGACACACAACCAAAGACCACTTCAGAACTCCCATCGACACCATCGGAAACTTATTCCAAGAGCTCAAGAGGGAGCTGATCCAGTGTAGGAGTTACTTCACATGCCGGAAACCTTTCGAAATCTCCAGCGTCAAGAACTCATACAGTCAAATGGGAGGGAAAGGCCTGTACAAAGCCATGGGAGAGCTGGACATGTTGTTCAACTACATTGAAGATTATGTGGCATCACAGGGACGTAGACGCTGAATGAATGGATAAGGACACACTTGATAAGCCAACGGGACCCCTATTTGAATAGTGTGGAAACAAGACTGGAACATAATATTTACACTGGATGTATAAATGTctaaatgcacaaatatttatttattactactttAAAAACTCTGTTTCTGCTGTGCTACCACACTAAatgatttgcattttttgtaCTTGGCTGTTTTTTGTACAGCCCTAGAATAGTTCCCGATGTGTTTATCTTCCTAGAAGAATTAAGCTCATACTGTTTAAGTCATATTGACCACAGCTTTTCTGTAATGTAGTTGCTTTTTGCAATGAAGTGtaataactgtttaaaaatgttgacaattttttatatttattaacagtGTAATTGCTACTTCAGagcttttaatttattgttttgtatgTTGTATTAAATGCTGGTACTTTGGTTAACTGAAGTATTAACTGTTTGATGTATCATATTTCAAATTTACtaattaaagtataaaaaataaataca

Function


GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0005125 cytokine activity molecular_function

KEGG:

id description
K05443 IL10, CSIF; interleukin 10

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU359932 lncRNA upstream 49405 6898490 ~ 6900530 (+) True G303658
TU359917 lncRNA upstream 79163 6867718 ~ 6870772 (+) True G303645
TU359680 lncRNA upstream 156709 6791318 ~ 6793226 (+) True G303437
TU359641 lncRNA upstream 290597 6635857 ~ 6659338 (+) True G303404
TU359550 lncRNA upstream 447611 6498084 ~ 6502324 (+) False tmem167b
TU360012 lncRNA downstream 42058 6994845 ~ 7001112 (+) True LOC113539683
XR_003403952.2 lncRNA downstream 43286 6996073 ~ 7001081 (+) False LOC113539683
TU360102 lncRNA downstream 148983 7101770 ~ 7105529 (+) True G303806
TU360205 lncRNA downstream 462628 7415415 ~ 7420578 (+) True G303889
TU360207 lncRNA downstream 467919 7420706 ~ 7446186 (+) True G303891
XM_026935650.2 mRNA upstream 9171 6938018 ~ 6940764 (+) True il19l
XM_034314084.1 mRNA upstream 16784 6925266 ~ 6933151 (+) False prelp
XM_026935646.2 mRNA upstream 16784 6928044 ~ 6933151 (+) True prelp
XM_034314086.1 mRNA upstream 31950 6903339 ~ 6917985 (+) False zgc:113307
XM_026935647.2 mRNA upstream 31950 6913250 ~ 6917985 (+) True zgc:113307
XM_026935653.2 mRNA downstream 260922 7213709 ~ 7218371 (+) False fam72a
XM_026935652.2 mRNA downstream 260950 7213737 ~ 7218371 (+) True fam72a
XM_034314011.1 mRNA downstream 260950 7213737 ~ 7218371 (+) False fam72a
XM_034314010.1 mRNA downstream 260950 7213737 ~ 7218371 (+) False fam72a
XM_026935651.2 mRNA downstream 260950 7213737 ~ 7218371 (+) False fam72a
XR_003403967.2 other upstream 170577 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 2480761 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 5451448 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 5452308 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 6085047 863338 ~ 864888 (+) False fbxo42
XR_004580199.1 other downstream 1548851 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 1548851 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 3559884 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 3811487 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 3815920 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile