RNA id: XM_026935653.2


Basic Information

Item Value
RNA id XM_026935653.2
length 645
RNA type mRNA
GC content 0.49
exon number 5
gene id fam72a
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7213709 ~ 7218371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTATGAGCCgttttgaaaatgtttcagGAAGTGCATGTTTGTTGAAAGGGTTTGTCTGATCGAGCTGCACGATGTCTACGTCGAATTTTAAGAATAAGTGTGTTGCACAAGTGAACTGTATTTACTGCGACAGTCTTCTGTGCACGAGAGGCATGAAAGCTGTGCTGTTAGCAGATACAGAAATCGAGCTGTTCTCCACTGACATGCCTCCAAACAGGACTGTCGATTTCGTTGCAGGCTGCTATTCGACAGAAAGCTGTAAATGCAAATTAAGAGACATTGCCTGCCTGAAGTGTGGAAATGTTGTGGGGTATCATGTCGTGGCTCCGTGCAAACCCTGCCTGCTCTCCTGTAACAACGGCCACTTCTGGATGTTCAACAGCGAAGCTGTTTCCACCATCAACAGACTGGATGCAACAGGAGTGAATCTGCTGCTGTGGGGAGATCTACCAGAGCTTGAGGGAAGTGAGGATGAGAGCACAGACAGCCTTTCAGAAGAGGAATACCTCAGATAGAAGGCCATTGAGGTACCAAATCCCCCACCCCCCTCCACCCCCATTTCCTTTAATGAACTACTTGGGAGACTCAAGAGTCACGGTTTGAAGCACATCCTGTTGTCAGCTCGTGGGTCGGGGCGGGGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU360102 lncRNA upstream 108180 7101770 ~ 7105529 (+) True G303806
TU360012 lncRNA upstream 212597 6994845 ~ 7001112 (+) True LOC113539683
XR_003403952.2 lncRNA upstream 212628 6996073 ~ 7001081 (+) False LOC113539683
TU359932 lncRNA upstream 313179 6898490 ~ 6900530 (+) True G303658
TU359917 lncRNA upstream 342937 6867718 ~ 6870772 (+) True G303645
TU360205 lncRNA downstream 197044 7415415 ~ 7420578 (+) True G303889
TU360207 lncRNA downstream 202335 7420706 ~ 7446186 (+) True G303891
TU360208 lncRNA downstream 219084 7437455 ~ 7448739 (+) True G303892
TU360300 lncRNA downstream 485845 7704216 ~ 7705243 (+) True G303966
TU360545 lncRNA downstream 684984 7903355 ~ 7903564 (+) True G304193
XM_026935649.2 mRNA upstream 260922 6949935 ~ 6952787 (+) True il10
XM_026935650.2 mRNA upstream 272945 6938018 ~ 6940764 (+) True il19l
XM_034314084.1 mRNA upstream 280558 6925266 ~ 6933151 (+) False prelp
XM_026935646.2 mRNA upstream 280558 6928044 ~ 6933151 (+) True prelp
XM_034314086.1 mRNA upstream 295724 6903339 ~ 6917985 (+) False zgc:113307
XM_034314287.1 mRNA downstream 190464 7408835 ~ 7541196 (+) True foxp4
XM_034314289.1 mRNA downstream 190464 7408835 ~ 7541196 (+) False foxp4
XM_034314288.1 mRNA downstream 229482 7447853 ~ 7541196 (+) False foxp4
XM_034314028.1 mRNA downstream 331415 7549786 ~ 7593458 (+) True mdfi
XM_026935267.2 mRNA downstream 331509 7549880 ~ 7593458 (+) False mdfi
XR_003403967.2 other upstream 434351 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 2744535 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 5715222 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 5716082 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 6348821 863338 ~ 864888 (+) False fbxo42
XR_004580199.1 other downstream 1283267 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 1283267 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 3294300 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 3545903 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 3550336 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile