RNA id: XM_034314060.1


Basic Information

Item Value
RNA id XM_034314060.1
length 2734
RNA type mRNA
GC content 0.43
exon number 6
gene id tafa4b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2965364 ~ 3013692 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcGTGTCTGTCACCTAAACAGCTGGATGTAAGGTATGCTTTTAACTTTGATGCGGCTGGAAGTGAGATATAACCCTGCAGATGTGCAGgtctgGTGTAGTGAGAGGAGCACACAGGCGAGTTGGAGTTGATCTGGAGATCTGGAGTGAGAGAATTATCACTGGgagGATGGAGATGAGGTGGAGGTCTGCATGGCTCTTGCAGCTCATCCTCCTGGTCATtgtagtgatgatgtcatgCCGACCAGTGTGTGGTGGTACCCAGAATTCAAGGGCAAGCACAGGTCAGTACCAGGTAAAGCAGGGTACGTGTGAGGTCGTGGCGCTGCATCGCTGCTGCAATAAGAACCGGATCGAGGAGCGCTCGCAGACCGTCAAATGTTCCTGTTTCCCTGGACAGGTTGCTGGAACGACCCGCGCTCAGCCGTCCTGCGTGGAAGCGTCCATCGTCCTGCAGAAATGGTGGTGTCAGATGCACCCGTGTCTGGATGGGGAGGAGTGTAAAGTTCTGCCGGACCTCACGGGATGGTCCTGCAGCACGGGCAACAAAGTCAAAACCACCAAGGTCACGCGATAGCGAGAACACGGCTGCCCCCATGGCTCCAGGAGACCTAAGACTCTTGAACATGGATTTCTATTCTGGGAAAAGTAGCCCGATTACTCTGGATATCACCCAGACTGGGAATTTAGCAcacgatggatggatggatggatggatagatggatataCCATGTTATAAACTCACAGTGATGAAAAGACATGATGATGGACCACatctatttatataaaaacataaatctatataaatatCCAGTGGTGGAGGATGTGGGCGGAGACTTCTCTAACCTAAACTCTTGAACTCCTACAGGAACGTAGCAGAGTTGCTTTTTTTTGGGGACTACATGGATGACCTTGGCGtccatacgtgtgtgtgtatatgcgtgtgtgtgtgtgtgtataaatgcatatagccgtgtgtttgtgcatgtataTATGTGCAGACATGCActtgtgtgcatatatatgtgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgagcaaGCCAAGAAAATCTCCAAGGTTCAAAGCGGCGAGCTCATATCCATGCGAGACCGCGGCGTCAGTCACAAAGTCTTTTCAGACTTCTAATTAGAGATGCTAAACAGGATCATAACAATGTAAGATATTAGCACTTGTTGGAAATCAGTTTTGAGAATAATTTTGTGTTTGTCCAGATAGTTCCTTATCTTCATGTACCACGAGGTCCTGAGGGAAATGCGATGCATGTCGCTGTTGGTTGGACGCTGATCAAATACAAAGACTTCTGTGATGGAAAAATGATCTTAATGTAACTTAACcagtctcattttcttttttgggaCATTTAAAACACTCACAGATGATGATTATCTATGAAACATACAAACTACACATGTACCCTTAAAACTCATCCTTCtttgtttagttattttatttatagcccGGCTCATAGCGCTTTTCAACTGAACAGCGTAGCACGACACGGCTCGGACAAATTCgaagtctgtctgtctatttttcaTTACAtaacactgtaaataaagaagGGTCTTTAAGGAGGGTTGTCGTGTGGTGACCAGTGATATTTTACAAGAAGTAAAATACtactcaaaattaaaaaaacaaaacaattaaactAGGCATATCTCATTTTATGCTATCATGTGACATGTGCCTCCATAACAGGCTAAACCGTTTAGCATGAGACACAGCGAATGCATACAAACAAGgtcaggggtgccaatactttaaaaAACCATGTGTGCCGGGTTTATCAGATGAATCTGGAACAGTGTGCATGTAGGGcactatttcatttcattttgccCTTATGttgtaccctatgtagtgagcccACAAAGTGAACGTGAAGCTGTTCTGGATTCTGGATGATTTGAAGATGGACAATTTAACTATATCACAGGGACGTAATGTAAAAGCAAGCTAAatagtgacatttaaaaaactgttgtAATGTTCACTGTATTATGTTATCatgttgctttaaaaatgaggaaaaacaatTTAGCAGACGTCCGTGCTGAAACTCATTCTCGTACTGTCCGTTAGAAAAAAAACGTTCTATCAAGAGACATAGGAAGATTAAATTCTGGCTCCACCCATAAGTCCTGGCTCGGACCTCGTGGTACCTGGATGAGAAAGGTAACCAAATTCCAAAGCGGCAGTAGAAATTGAGACACCGTTAATCATGGGATCTTGGTTAATTTGCCTGGTTAATTGGAAAAGCGCTGTAATGTCCTATCTAGTCCGTGTTGCACGGTTCGACTCCAATTTATCACAGGGTAGAAAGATACAACACTTACAGGGGCAGTTTGCTATTTCTGGAGCTCTCTGCTGGCTGAATTTCAGCTGCAGTGACCATTACAAACATGGACATGTCTTCCATTTTCCCACctcattttaagaaaaaagagTAAAGTTGAGACAAGTAGCTGTGCCCTGGACGGGACACAGCGTTATTGCCGGGTCAGAAAAATCGAAACCGAATCCCTAAACAAAGATTGTAATGAAATCCACTGCATGACAACTTTGAAAATCATAGTTTTTTAATGTATCTttgaaattatatgattataatacTATATggtctagaaacacttttaaacctAACAAAAGGATCTAAGTGTTTTGAAAAACCATAATGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU356639 lncRNA upstream 60448 2906708 ~ 2908054 (+) True G300775
TU356715 lncRNA upstream 231594 2736478 ~ 2736908 (+) True G300843
TU356713 lncRNA upstream 231641 2736478 ~ 2736861 (+) False G300843
TU356712 lncRNA upstream 232495 2735036 ~ 2736007 (+) True G300842
TU356710 lncRNA upstream 238895 2728484 ~ 2729607 (+) True G300841
XR_003403928.2 lncRNA downstream 15248 3028940 ~ 3060846 (+) True LOC113539486
TU357449 lncRNA downstream 438979 3452671 ~ 3453505 (+) True G301487
TU357469 lncRNA downstream 508100 3521792 ~ 3530359 (+) True G301506
TU357636 lncRNA downstream 896948 3910640 ~ 3912283 (+) False LOC113539463
TU357807 lncRNA downstream 904638 3918330 ~ 3918531 (+) True G301792
XM_034314416.1 mRNA upstream 9797 2941857 ~ 2958705 (+) True eogt
XM_034314415.1 mRNA upstream 9797 2941857 ~ 2958705 (+) False eogt
XM_026935408.2 mRNA upstream 27236 2925133 ~ 2941266 (+) True tmf1
XM_026935409.2 mRNA upstream 27236 2925133 ~ 2941266 (+) False tmf1
XM_026935727.2 mRNA upstream 64895 2895078 ~ 2903607 (+) False hmces
XM_026935483.2 mRNA downstream 275040 3288732 ~ 3385414 (+) True suclg2
XM_026935398.2 mRNA downstream 506057 3519749 ~ 3559647 (+) True lrig1
XM_034314105.1 mRNA downstream 610201 3623893 ~ 3802333 (+) True magi1b
XM_034314480.1 mRNA downstream 788037 3801729 ~ 3806127 (+) True LOC117599926
XM_034314103.1 mRNA downstream 836869 3850561 ~ 3913086 (+) True LOC113539463
TU355411 other upstream 1470015 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 1470875 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 2103614 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 2123691 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 2447615 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 1453385 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 3650382 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 5487946 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 5487946 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 7498979 10512671 ~ 10513270 (+) True G305515

Expression Profile