RNA id: XR_003403954.2


Basic Information

Item Value
RNA id XR_003403954.2
length 1772
RNA type misc_RNA
GC content 0.44
exon number 5
gene id LOC113539694
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10764274 ~ 10773442 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGTCTCTGATTGGATAATGACGTGAGGAGCGGGAGACACTCACCTGCGGCTGACGTCAATAACGAGCGAGCCAGAGCAGCGCTTGCTAGAAAGAAAACAGAGGCACAGCAGAAGTCTTCGGAACAGTGTCTTTTAAACGTTTTTATCTACAATTTTAAGAAGTTTTTAGAGGGTCTGCTGCTGTTCAATTGGAAAATTAAAAGTTTGCACGGTACTGTGAAATCACAAGAAGTGAGTTTGTGGCTGATCCGAATGTCTGTGGTCCTCTACGCACTCCAGAGATGTATGACGCAGCTGTTGCTGATCTCCAGGCTGAAAACATCCAAGGCGTCAGAGGGATAAAGGTGCCATTTTGTCTTCAGTGCAAATATGACTGACTCAGAGCGAACCTTCCTAGATGGCGCCATCATGGAAGTCCTACCACAACTTCAagcagtaaacaaaaacatcctggaAGAGCACTTGCAGTCCATTGGAGTCGAGACGTATGATCTACGCTTCGTAACGGAGGCTGATTTGATGACAGCATTAAGACCTGTAGAAGCCAGAAAGCTTCTTTCTGCTTGGAAACAGAAATACCACACTCCCGAGAAGAGTTCACTATCATCTATGGAAGCCTCACCTACCCAATCGCTGCCATCGCTCTCTGTTTCACCCCAAAGTTCATCGTCAAGCTCCTCCAGCAGTCCAGGACTTGACACACAGTGGGACATCAACTTTGAAATTCCATGGAGTAAATTTCCTGAGGAAGTGATGCAGGCTTTAGAGAGGGGAAAAAGGCCTGGCCCAAAACTAACGAGGCAAATGGTCTGGATTGTTGTGACTGAGATGATGCAAAAATGCCCTCATGTAGGTAAAAAGCATTCAACTGACGTTGCAACAAAAATGGTGGCAAAATATCCCAGTTCTCTCCAAGATGTAATAGAGGGTGATATTGTTGGAACAGGCTACCATTCCCTTGTCAAACAGTTGCAAAACAGAATTGAAAATGTGAGGCGCACTTCAACAcccaaaataagaaaaagaaaacatcagacCGATGACTCGGACCAAACAGACGAGATCCCATTAGAAGACAGAGCAGCAATGCAGGACACTTATGGATGCATTAAATGGAATGTAAAATTTCTGCCCCTTGAAGAAACTCAAGAGAGCCAGCAGCAAAAGATGGAAAAACTCAAGGTGATGTTCCAACACTCTGATGCCAATCCAGAGGaggtaaaatgtttaatgaagtccacattttacacacagcGTCAACATGTCAACCAGGGAAAAAGTATCAAATGCCTTAGAGAGGAGTGGCCGTTTTGGTTTGATGAACTTGGCATGTCAGTCCACTTTATGGAACTCACTGGGATTGACCTCAAAGAGACATTCACACGAAATTTGGATTTGAAAGGAAAAAGGCTACATGACCACAGTTTGTGTCAACAAGAGCAAGAAATTCCTTCAGAATTATGCAAGGCTTCAGAGGATCTGGGGACTGCAGAGTGGCTGTTCAGATAATGTGATAGAGATGATCCTGCTTCTGCTCAGCTACTTTGATGAGAAGGAGGAGTCCATGTTCTTCCATGTAGAAGATACATGTCTGGCAGAAGAGGTCCAACTGGAGCAAGTGCTTCTGACACCCGTTGTTATTGTCTGTGGACAGTCCTGCTATTCCTCCAcaaggtacactatattaccaaaagtattctgtcacctgccttgactcacatatgaacttaagtgccatcccattcctaacccatagggttcaatatgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362194 lncRNA upstream 96133 10667197 ~ 10672574 (+) True G305584
TU362193 lncRNA upstream 104493 10642266 ~ 10664214 (+) True G305583
TU362178 lncRNA upstream 227175 10541311 ~ 10541532 (+) True G305568
TU362127 lncRNA upstream 244158 10524100 ~ 10524549 (+) True G305522
TU362122 lncRNA upstream 251145 10517284 ~ 10517562 (+) True G305517
TU362259 lncRNA downstream 24527 10797969 ~ 10800231 (+) False G305642
TU362260 lncRNA downstream 24527 10797969 ~ 10799128 (+) True G305642
XR_003403810.2 lncRNA downstream 300320 11073762 ~ 11075590 (+) True LOC113538022
TU362371 lncRNA downstream 300453 11073895 ~ 11075543 (+) False LOC113538022
TU362373 lncRNA downstream 300453 11073895 ~ 11075543 (+) False LOC113538022
XM_026935543.2 mRNA upstream 478892 10280520 ~ 10289815 (+) False mon1bb
XM_026935542.2 mRNA upstream 478892 10280536 ~ 10289815 (+) True mon1bb
XM_034314339.1 mRNA upstream 478892 10280536 ~ 10289815 (+) False mon1bb
XM_026935605.2 mRNA upstream 629821 10102314 ~ 10138886 (+) True gnl3l
XM_026935383.2 mRNA upstream 669185 10095530 ~ 10099522 (+) True LOC113539559
XM_026932796.2 mRNA downstream 287566 11061008 ~ 11064101 (+) True ppcs
XM_026932797.2 mRNA downstream 287570 11061012 ~ 11064101 (+) False ppcs
XM_026932795.2 mRNA downstream 287762 11061204 ~ 11064101 (+) False ppcs
XM_034314395.1 mRNA downstream 305618 11079060 ~ 11107165 (+) False cpne1
XM_034314396.1 mRNA downstream 305628 11079070 ~ 11107165 (+) False cpne1
TU362120 other upstream 255437 10512671 ~ 10513270 (+) True G305515
XR_004580199.1 other upstream 2209796 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 2209919 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 3989349 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 6299533 4467077 ~ 4469174 (+) False LOC113539599
TU362376 other downstream 338297 11111739 ~ 11112518 (+) True G305727
TU362445 other downstream 395017 11168459 ~ 11178473 (+) False unm_sa1614
TU362496 other downstream 441573 11215015 ~ 11221515 (+) False dynlrb1
TU362531 other downstream 540742 11314184 ~ 11315436 (+) True G305863
TU362537 other downstream 552162 11325604 ~ 11326360 (+) True G305869

Expression Profile