RNA id: XM_034314443.1


Basic Information

Item Value
RNA id XM_034314443.1
length 2239
RNA type mRNA
GC content 0.43
exon number 13
gene id nfs1
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8918438 ~ 8926213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tactccaaaaCCAGTGTGTTTCATGTACGTTATTGAAATCCCacctatatataaaaaatatcctATCAGAGTTTGTAAGGACAGACGGAACCCGCCCACACCTCAGTGTTATGCAGCGCCGCTTCTACTGTATACACTGCGCTCAGTGTCCATCTGCCGCGTGACAGTGTAAAGAGGTGTGGGGTGTCCTTGCTACTGATGTTTAAACAGCTACCAGTGTGAAGGGAAAACGGACCAGAATTACTTGTAACTGATTGTGAGCCATTATTGAAAATCCAGTTATCATTTGCAAAGGAAATAAAACGCGTGAAGATGATAAGTAAGAGTGTTGTGAAGGCGTTTTCGGGCTCCATACGTGGGATTTCTTCTTCTAGCCTTCGACTGAATTCTCCACAAACTTCTGTCAgtgcctctcacacacacagagGGATCAAACGTAGGACActggagaaaaatgaaatgcGGCCGCTCTACATGGACTTCCAGGCCACAACACCAATGGACCCAAGAGTAGTGGATGCCATGCTCCCTTACCAAGTGAACTACTACGGCAATCCACACTCCAGGACTCATGCTTATGGGTGGGAAAGTGAGAGTGCAATGGAAAGAGCAAGAAAACAAGTAGCAGATCTAATTGGTGCTGATCCACGAGAAATTGTGTTTACCAGTGGTGCCACAGAGTCCAACAATATGTCCATCAAAGGTGTGGCCCGTTTCTATAAAGCCAAGAAGAAACACATCATcaccacacagacagaacacaagTGTGTACTAGACTCCTGTCGTGTCCTAGAGGCTGAGGGATTTAAAGTAACCTACCTGCCCGTAAAAGAAAATGGCTTGATTGACCTCCAGCAATTAGAGGAAACAATATGTTCTGATACGAGCTTGGTATCTGTGATGACTGTTAACAATGAGATTGGAGTCAAACAACCAATCAAAGAAATAGGTCAGATCTGTAGGTCCAAGAATGTATTCTTCCACACTGATGCAGCCCAGGCAGTCGGAAAAATCCCCATCAATGTCTCTACCTTGAAAGTGGATTTAATGTCTATTAGTGGCCACAAAATATATGGCCCCAAAGGTGTTGGTGCTCTGTATGTGAGGAGGAGGCCCAGGGTTCGTATTGAGCCATTGCAGAGTGGAGGGGGTCAGGAGAGAGGCCTGCGCTCAGGCACTGTACCCACTCCACTGGCTGTGGGTCTCGGCATTGCCTGCGAGATTGCCCAGCAAGAAATGGAGTATGACCATGCCCGAGTCTCCATGCTTGCTAATCGTCTTGTGCAGAAGATAATGTCTGAGATTCCTGATGTTGTGATGAATGGAGATCCTGAACAGCGATATCCAGGATGCGTCAATTTATCATTTGCCTATGTTGAGGGAGAAAGTCTGCTGATGGCCTTAAAAGATGTTGCACTTTCTTCTGGGAGTGCATGCACGTCTGCTTCTTTAGAACCTTCCTACGTACTGAGAGCAATAGGAACAGATGAGGATCTTGCCCATTCCTCAATCCGGTTTGGAATTGGGCGCTTTACTACAGAGGAGGAAGTGGACTACACAGCGGAGAAGTGCATTCAGCAGGTTCACCGTCTACGGGAGATGAGTCCTCTGTGGGAGATGGTGCAAGAAGGCATTGATCTGAAAAGTATCAAATGGACACAGCACTAAAGAGCCTGTCAAGATGAAATGATGGAAgattactgcagtgtgaatAATTAGTTGTATAGCTTACCTAGAACTTCTCTTTACTCACGCACAAGAAACGCACACAATCTTTTCTTCTTGAAAATTGAGATCATTCTTTGAGCAGTGTTTTTGAGTGGAGTTCCATAGGAGAGGCTTCTTAGAATTAGTTTTATCAATATAGAATATGGGAAAGATATGAGTGAGTAATGTTTTTgttatgtagattttttttctacattccTGTTTTCAGGTCATTCACACTGCATAAAACAATCATTACTATATGTAGTCTTTGTCTcttacagtgttgtgtgttcagTTGTATATAAAGCCAGCACTTAGCTTTTCCAATCCTCCTATTATATAGTGTCTTTTGTCATTATAAATTCTTCTAATTATACATCAGTAACAGTCCAATGTGCGCACATTGAGATCTTCAGACTAGTTCTATGgacactttcttttctttttttttttttgagagagagagatgtatttATGAAaccttgattaaaaaatgtgaattaaagCTTCAAAAGGTCTGAAAACAGAG

Function

GO:

id name namespace
GO:0006534 cysteine metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0031071 cysteine desulfurase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361012 lncRNA upstream 156185 8761931 ~ 8762253 (+) True G304600
TU361008 lncRNA upstream 156795 8756598 ~ 8761643 (+) True G304599
TU361011 lncRNA upstream 159888 8756598 ~ 8758550 (+) False G304599
TU360977 lncRNA upstream 199975 8718224 ~ 8718463 (+) True G304575
TU360968 lncRNA upstream 228729 8689493 ~ 8689709 (+) True G304566
TU361111 lncRNA downstream 12846 8939059 ~ 8939687 (+) True G304669
XR_003403942.2 lncRNA downstream 78478 9004691 ~ 9016994 (+) True LOC113539633
XR_004580248.1 lncRNA downstream 79690 9005903 ~ 9016994 (+) False LOC113539633
XR_004580247.1 lncRNA downstream 93387 9019600 ~ 9021252 (+) True LOC113539427
XR_003403926.2 lncRNA downstream 93387 9019600 ~ 9021252 (+) False LOC113539427
XM_026935431.2 mRNA upstream 9907 8901673 ~ 8908531 (+) False rbm39a
XM_026935430.2 mRNA upstream 9907 8901674 ~ 8908531 (+) False rbm39a
XM_026935432.2 mRNA upstream 9907 8901674 ~ 8908531 (+) True rbm39a
XM_026935429.2 mRNA upstream 9907 8901674 ~ 8908531 (+) False rbm39a
XM_026935434.2 mRNA upstream 9907 8901674 ~ 8908531 (+) False rbm39a
XM_026935213.2 mRNA downstream 302229 9228442 ~ 9237329 (+) True syt6b
XM_026935592.2 mRNA downstream 390185 9316398 ~ 9335379 (+) False inavab
XM_026935591.2 mRNA downstream 390185 9316398 ~ 9335379 (+) False inavab
XM_026935590.2 mRNA downstream 390186 9316399 ~ 9335379 (+) False inavab
XM_026935587.2 mRNA downstream 390187 9316400 ~ 9335379 (+) False inavab
XR_004580199.1 other upstream 359527 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 359650 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2139080 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4449264 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7419951 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1586458 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1838061 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1842494 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1842494 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 2185526 11111739 ~ 11112518 (+) True G305727

Expression Profile