RNA id: XM_034314435.1


Basic Information

Item Value
RNA id XM_034314435.1
length 3534
RNA type mRNA
GC content 0.46
exon number 15
gene id dnajc16l
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6335684 ~ 6345255 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGCCCATGGCCTGTCTGAGTCTGAGAAGATGAGAGCGCTCTCCAAGCCTTTCCTGAGCTGTCTGATCTGTCTGGCTGTGGTCCTGCTTGTTTTGGGAAATGCATCAGCTTCCGAGTTCAATCCGTACACGGTGCTCGGAGTGTCTCGACACGCCAGTCAGGCTGAAATCAGGAAAGCGTACAAGCAGCTCGTCAAGGAGTGGCATCCGGACAAGAACAAAGATCCAAGTGCAGAAGACATGTTTATCAAGATTACTAAATCCTATGAGATCCTGTCGAGTGAGGATCGCAGAGCGAACTACGACCGATTCGGCCAGACAGATGAGAACCAACACCACAACCAGGGACCGCATGGTTTCCACCACTTCCATGACAGTTTTTACTTCGATCAGTCGTTCTTTCGTTTCACACAGTCGACTCGAGATTTCACTGACAGCAAGCACCTGCTTCAGTACGAGAAGTATATGAACGAAGTGGTGCCAGATAGCTTCAAAAGGCCCTACCTGATTAAGATTACGTCAGAGTGGTGTTTCAGCTGCATCCATATTGAGCCCGTCTGGAAGGAAACGGTTCAGGATCTGGAGCCACTGGGTGTGGGAATCGGTGTTGTGGATTTCGGTTACGAGAAGCGGCTAGCTACTCATCTCGGAGCCCGTGGCACCCCCTCCATTCTGGCGCTCATCAACGGCAGAGTGACCTTCTTCCACAGCGCTGTGTCCCGAGAGAACCTGAGGCACTTTGTGGAAAGCTTGCTGCCACATAACCTAGTAGAGAAGgtgACAGATGATAACTACATACAGTTTTTGAACGGTTGGCGAGAAGAGAACAAACCTAGAGTACTACTCTTTGACGCTGCTGCTTCAGCACCATTCCTTTACAAGCTCTCTGCATTTGCATATCGGGACTTTGTGCGGTTTGGGTACGTAGTTCATAGTGAGGCCACGCGTATCCAGCAGCAGTTCAGCATCAACATGTACGCTCCCACCATGCTGCTGTTTAAAGAGAACACTGAGAAACCTGCAGACGCCATACAGTCCAGGGGAATGAAAAAGCAGACCATTGATGAGTTTGTCTCGAGCAACCGTTTCCTGCTAGTGCCACGACTGGTCAATCAGAAGCTCTTTGACGAGCTGTGTCCAGTCAAACAGTTCCACCGCCGTCGGAAATACTGTGTCTTGCTCATCACTGGGGAGGATGAGACGTTTGTGTCTGTGAATGACGCCTTCTTTGACTTTGCCTCTTCTAACACTAAAGAGGTGGTGAGATTCGCCTACGTCTatcagaagcagcagcagcctcTCTGTGATACGCTGCTCAAAAAGGAAGACATGAGGCCTCCCCAGGTGATCATTCTGGAGAGGCGAAGCGCCGCAGGCAAGGTGCTGTACCGGACAGTGACAGGCGGCTGGAATGGGAGTGACGACGATAAGCACCGCCTCCATGAGCAGCTGGAGCTCCTGCAGAGAGACCCGAGCTTTCTCACCTATGATGCCATGCTGCCTGAACTCAACAATGAGCTCGCCTCAATGTTTCTAATTCGGTGGTTGAATGCTGCCTATGATTACCTTTCTCAAGTCTACTTTGACCTTCTCTACTCAAACTGGCGAGAGGTGATGCCCATCGTATCTCTGATCTTCTCCGCTCTCTTCATCCTGTTTGGCACCGTCATCATTCAGGCTTTCAGTGATTCAGAGGAAAAAACAGCCAAACGGAAGGCTAAAGAATCCCCAAAGACAGCAGGAAGCTCTTCAGATACAGAAAACACATCCAGccGTCCTTCAAAGAAGAACTTTGTGGAGGTGACGGAGTTGACAGACATGACCTACACCAGCAATCTGGTGAAATTAAAGCCGGGACACATCAATGTGGTGCTGGTGCTCACAGACGTGTCCAAACAGGTCCTACTGAAGAAGTTTGCCAAAGAAGTGTACTCGTTCTCAGGGTATCAGACTCTTCACTACTCCTTTTTTAATACTGACAAGCACAGTCGGTGGATGGACTCACTCCTGCAGTTGGCGCCATCTGCCAGGCTTTCAGAAGACGAGGAAGAAAAGGGCGCGTCCTCCTGTAAACCAGACTACACCGGCCACGTGCTGGCCCTTAATGGCCATAAAAAGTACTTTTGCCTGTTTAGACCTACGTTCACTGAGGACGAGGATGACACTGTACAGCTCCATCACAAGCTAGACCGGCTAAACCTATGGATGGAGAAGCTGACGGAGGGCACACTGCCCAGGCACCACGTTCCTGCCTGGCCTGACCTGCACACCACAACCCCTAAAAAATAAAGAGGTGGGTTTGAAACCCCCGTGGGAATCTCTTAAATATCAGGTCTGGACTCCACTGTATGGCTTTTGTGTGTTGTTGAAAGCAGGAGTTGTTGATGTTTGACTGGGAGTTGACCACAGGTACAGGTATACAGGTCTGTGTATAGTATATGAGGCTTGATTAGAAAATGTACTTACGCAGAACATTATTCTGGATTATGCACTGGCTGAGTTTTTCCCCGTGGCAGCACCAGGTACGTGCTTTTTGCTGCCAGCAGGGGTTGCACTACCAACCATGTTATTTTCACTGTGGGGAAAAAGTCTGTGGACTTAATTTTAGCTGCTGATTTATGCTGTAGTCACATTCACAGATCGGTTCATGCACAGACGAGAGAGGAAAATCCTGTCAGAATGAAAGCGCATATACTTATAATGACCGAGACTTGTTCTAGGATCAGGTGCCACCTCTTTATTTATAGAGACATGAGCTATGTAACAAAAAAAGACCACTTTTTTGAATATATTGGAATGGCAGTACTGCACTGGCAATAGTGCtggaaattttaattttaccCACAAACGCTGTTTtagatctaaatctaaatgtaGAGTATATAAATGATCTGTCCATTATTTTCCTAACAACTTCAATGTTGCTAATAATACACGGCTTGATCATCTTTTACTactgagtgcattaataattaataagtgGCAGAAACCTCCATCGTGTTTGTAGCATCTTTAATCCACAGCTGGTGAAAAGGCTGTGATAGGTCAGTAACGGTTTTCAGCTGATGAATGCGCTTCTGATTGAGCAAAACTATATAACCAAACAAATCCTGTTCAAAGCACTATTACTTCTCcatttatgagtgtgtgtgattgtgaaatgtgttttcttgCATGAAAAAAGCCTCATAGTTGCCATGTTTTGCTTTGACTTCTAGCATGTAGCATCTTTCTTTAAATGTCACCTCTTGGACCATATAAAACTTCTCACTTTTTCTCACTTTTACATTTTCCCCCTGCTTAAAACATCATCATCCAAAAGTAATTTAACACAAGTGTGTTGACAAGGTTACTTGTAGTGTATCTACTGATCCTCTTCTCAAAggtaaattaaaattttagcATCCTGACCTCAAAAAATTTTGTTAGATGTTATTTAAAGGaagatatttaatttataagaTGTTGCATTGTTTGTTCCATGTCTTATTCATAATGTTTAACTTAAATAAACTTTACACAAAGACTACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU359310 lncRNA upstream 41995 6200446 ~ 6293749 (+) True LOC113539422
TU359311 lncRNA upstream 41995 6200446 ~ 6293749 (+) False LOC113539422
TU358684 lncRNA upstream 754765 5577633 ~ 5580979 (+) True G302585
TU358674 lncRNA upstream 770730 5522534 ~ 5565014 (+) True G302575
TU359315 lncRNA downstream 4937 6350192 ~ 6351096 (+) True G303181
TU359549 lncRNA downstream 152829 6498084 ~ 6502636 (+) True tmem167b
TU359550 lncRNA downstream 152829 6498084 ~ 6502324 (+) False tmem167b
TU359641 lncRNA downstream 290602 6635857 ~ 6659338 (+) True G303404
TU359680 lncRNA downstream 446063 6791318 ~ 6793226 (+) True G303437
XM_026935518.2 mRNA upstream 1632 6318875 ~ 6334112 (+) True LOC113539617
XM_034314072.1 mRNA upstream 22274 6310692 ~ 6313470 (+) True LOC113539691
XM_034314073.1 mRNA upstream 22274 6310692 ~ 6313470 (+) False LOC113539691
XM_026935525.2 mRNA upstream 27048 6305677 ~ 6308696 (+) True LOC113539620
XM_034313989.1 mRNA downstream 12197 6357452 ~ 6363685 (+) False LOC113539438
XM_026935179.2 mRNA downstream 13452 6358707 ~ 6363685 (+) True LOC113539438
XM_026935182.2 mRNA downstream 20801 6366056 ~ 6368120 (+) True si:dkey-33m11.6
XM_026935384.2 mRNA downstream 31180 6376435 ~ 6384403 (+) True ddx19
XM_026935570.2 mRNA downstream 61515 6406770 ~ 6464835 (+) False acap3b
TU358141 other upstream 1866570 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 4837257 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 4838117 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 5470856 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 5490933 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 318819 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 2156383 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 2156383 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 4167416 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 4419019 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile