RNA id: XM_026935689.2


Basic Information

Item Value
RNA id XM_026935689.2
length 3584
RNA type mRNA
GC content 0.48
exon number 25
gene id cse1l
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 5473890 ~ 5486512 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATACCGGGCTGCGCTGTGGGTCGCATTGCGCATGCGCGAAATCGTGACCGCGCTGTTGTGTGAGACATTTGAAAGCGGGTGAAGTTTATGCATCACTCCGGCCGCCGCTAATCACAGCACTTACTCCAAAAGCGCACGCTACCATGGAGCTAAACGACGCCAACCTCCAAACTCTGACTGAGTACTTGCGGAAAACACTAAACCCTGATCCACTTGTCAGGCGTCCAGCGGAGAAGTTTCTAGAGTCGGTGGAGGGGAATCAGAACTACCCCATCCTGTTACTGACGACACTAGAGAAGTCCCAAGATGATGTGATCCGAGTCTGTGCAGCAGTCACCTTTAAGAACTACATTAAGAGGAATTGGCGTATAGTTGAAGATGAACCAAACAAAATTTCAGACCCTGACCGGACAGCTATCAAGGCCAACATTGTAAATTTGATGCTGACCAGTCCAGAGCAAATACAGAAACAGCTGAGCGATGCTATCAGCATCATTGGGCGAGAAGATTTCCCTCAGAAGTGGCCTGATCTCCTGACAGAGATGGTAACACGCTTCCAGAGTGGAGATTTCCACATTATCAACGGCGTGCTCCGCACCGCTCACTCACTTTTTAAACGATATCGGCATGAGTTCAAGTCTAATGAGCTGTGGCAAGAGATCAAATTGGTGTTGGACACTTTTGCACAGCCTCTTACCGAGCTCTTTAAGGCTACGATCGATCTGTGTCAGACACATGCTACAGACGTGAATGCCTTGAAggtcctcttctcctctcttacACTTATATCAAAGCTGTTTTACAGTCTAAACTTCCAGGATCTTCCAGAGTTCTTTGAAGACAACATGGAGACTTGGATGACACACTTTCACAATTTATTAACCTTGGATAACAAGCTCTTACAGACTGATGATGAGGAGGAAGCTGGTCTCTTGGAGCTTCTGAAATCTCAGATCTGCGATAATGCAGCTCTTTATGCTCAAAAGTACGATGAGGAATTTCAGCCCTACCTGCCTCGCTTTGTGACGGCCATCTGGAACCTGCTGGTCACCACGGGGCAAGAGGTCAAATATGATTTGCTAGTGAGCAATGCCATCCAGTTCCTGGCATCGGTGTGTGAGAGGCCACACTACAAGCATCTGTTTGAAGATCAGAACACACTCACCAGCATCTGCGAAAAGGTCATCGTCCCCAACATGGAGTTCAGAAGTGCGGATGAAGAAGCGTTTGAGGACAATTCAGAAGAATATATTATAAGAGACCTTGAAGGCTCAGACATTGACACAAGGCGGCGAGCTGCCTGCGACCTGGTGCGAGGACTCTGTAAGTTCTTTGAGGGCCCTGTGACAGCCATTTTCTCCGGCTATGTAAACTCCATGCTGACTGAATACGCCAAGAACCCATCAGTGAACTGGAAGCACAAAGACGCAGCTATCTACCTAGTGACATCGCTAGCCTCCAAAGCCCAGACACAGAAGCATGGGATCACGCAAGCCAACGAGCTGGTGAACCTGACTGAGTTCTTTGTGAATCACATTCTACCTGACCTGAGGTCTCCCAATGtgaatGAGTTTCCCGTCTTAAAAGCAGATGCCATCAAATATGTCATGACCTTCAGAAGTCAGCTTCCCAAGGAGCAGCTGCTAGAGACAGTTCCTCTGCTGGTTACTCACTTACGGGCTGAGAGCACAGTGCAGCACACTTATGCATCTCATGCATTAGAGCGCCTTTTCACCATGAGGGGAGCCAACAACTCCACGCTCTTCTCAGTTGCTGAGATTGCACCTTTCACAGAACAGCTCCTCAACAACTTGTTCAATGCGCTGGCAATACCTGGCTCATCAGAGAATGAATACATCATGAAAGCCATCATGCGAAGCTTCTCACTTCTCCAGGAAGCAATCGTACCCTACATCCCTACACTGATTGGCCAACTCACTCAGAAGCTCCTTCTAGTCAGCAAGAATCCCAGCAAGCCCCATTTCAATCACTACCTGTTTGAGTCACTGTGCTTGTCCATCCGGATCACCTGTAAGGCCAACCCTGCGACTGTGGGCAGCTTCGAGGAGGCCCTCTTCCCCGTATTCACAGAGATCCTTCAGAACGATGTacaggAGTTTGTGCCGTACGTGTTCCAGGTGATGTCCTTACTGCTAGAGATCCACACTAGTGCTATTCCTTCCTCCTACATGGCACTGTTTCCTCACCTGCTGCAGCCTGTCCTGTGGGAGCGCACAGGTAACATCCCGCCTCTGGTGCGCCTCCTGCAGGCCTACCTGGAGAAAGGAGGAGGCACCATCGCCAGCTCAGCCGCAGATAAGATCCCTGGTCTTCTCGGCGTGTTCCAGAAGCTCATCGCCTCCAAGGCCAATGACCACCAGGGATTTTACCTGCTTAACAGCATAGTGGAGCACATGCCCCAAGAATCAATTAGTCAGTATAGGAAGCAGATTTTCATCCTGCTTTTCCAAAGATTGCAGAGCTCCAAGACCACGAAGTTTATCAAGAGTTTCCTTGTCTTCATTAACCTCTATTGTGTGAAATATGGGGCGATTGCTTTGCAGGAGATATTTGATGACATCCAGCCAAAGATGTTTGGCATGGTGTTGGAGAAGATTGTGATCCCAGAAGTGCAGAAAGTATCAGGGCAGGTGGAGAAGAAGATCTGCGCAGTAGGCATCACCAAAATCCTCACCGAGTGCCCAGCCATGATGGACACAGAGTACACCAAACTCTGgcctcttgtGCTCCAGGCCCTGATCGGTTTGTTTGAGTTGCCGGAAGACGACAGCATCCCTGATGATGAGCACTTCATCGACATAGAGGACACGCCGGGGTACCAGACTGCCTTCTCCCAACTGGCCTTCGCTGGCAAGAAAGAGCACGATCCTATTGGAGATGCTGTTAGCAACCCTAAAATCCTGCTGGCCCAGTCTTTACACAAACTCTCCACAGCCTGCCCAGGGAGGGTTCCCTCCATGCTGAGTACAAGTCTAAACACTGATGCGTTGCAGTTTCTGCAGGGTTACCTCCAGGCAGCTTCAGTCCAGCTTGTCTAAGATGGATGCTATCTTCACTTCGCCTCTGGAGTCTCTGTGCATACAGACCGACGTACCTAAACACCAACCAACAGATGAACAGTCGACTTAACATCCTGCACCCTCAAGCATCagagctgcattttaaaatggattGTGACCAAGCAGAAAAATAGCAAAGTTACTTGAGTGAAGACTTGTTACTTGAGGTTACAGATTTGTGATCTAGCATTTTGATCTGACTCTTTGCATCTGTTAACAGTCCACAGACGTCAGAAATACAGGATCTCAACAGGTATCAACAGTAATTTGGAGCAGAAATGATATCTTGGACAACACAATTGGGAAGACATTTGATGTCTAACATtgagtgggatttttttttccatgtagaTCCAGGAGTGgtttttaatgtataaataagGGCTGTCATTGTGGCACTAAAAAAAGGctctttttctttgttgcaTGTCATTGTCATCTTTGTCTGGTCTTAGTTTTAAGGCTCTGTCTAATTGTTAATAAAGAAATGCACTTGTATAATT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0007589 body fluid secretion biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18423 CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU358652 lncRNA upstream 2398 5427207 ~ 5471492 (+) False ptprga
TU358624 lncRNA upstream 256465 5175570 ~ 5217425 (+) True G302530
XR_004580245.1 lncRNA upstream 595515 4837152 ~ 4878375 (+) True LOC117599916
TU358451 lncRNA upstream 652991 4820692 ~ 4820899 (+) True G302360
TU358359 lncRNA upstream 740829 4732153 ~ 4733061 (+) True G302281
TU358674 lncRNA downstream 36022 5522534 ~ 5565014 (+) True G302575
TU358685 lncRNA downstream 74101 5560613 ~ 5561524 (+) True G302586
TU358684 lncRNA downstream 91121 5577633 ~ 5580979 (+) True G302585
TU359310 lncRNA downstream 713934 6200446 ~ 6293749 (+) True LOC113539422
TU359311 lncRNA downstream 713934 6200446 ~ 6293749 (+) False LOC113539422
XM_026935407.2 mRNA upstream 2329 5210644 ~ 5471561 (+) True ptprga
XM_026935208.2 mRNA upstream 733041 4695159 ~ 4740849 (+) True camk1b
XM_026935468.2 mRNA upstream 790339 4681030 ~ 4683551 (+) True spcs1
XM_026935455.2 mRNA upstream 800203 4666876 ~ 4673687 (+) True gnl3
XM_026935462.2 mRNA upstream 1004694 4467059 ~ 4469196 (+) False LOC113539599
XM_026935774.2 mRNA downstream 20481 5506993 ~ 5510940 (+) True LOC113539749
XM_026935775.2 mRNA downstream 20481 5506993 ~ 5510940 (+) False LOC113539749
XM_034314405.1 mRNA downstream 28196 5514708 ~ 5517420 (+) True LOC113539468
XM_026935210.2 mRNA downstream 29008 5515520 ~ 5517420 (+) False LOC113539468
XM_026935341.2 mRNA downstream 33610 5520122 ~ 5544024 (+) True bmp7a
TU358141 other upstream 1004716 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 3975403 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 3976263 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 4609002 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 4629079 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 1177562 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 3015126 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 3015126 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 5026159 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 5277762 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile