RNA id: XM_034314265.1


Basic Information

Item Value
RNA id XM_034314265.1
length 913
RNA type mRNA
GC content 0.51
exon number 4
gene id tmem240b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 762266 ~ 769955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAACATTTCACATAATAAACACTCGGTCAGGTcatttataatcacattaattCGTTAATTTTCGCTTCGGTtgatttaataaacacatttaaaatgtttgaacacTAAAAGTGTTCGCTTTTAGTTCAGTTTTTAGGTCACAAACCGCCTCGCGCACCGACCGTTAAAATTTAAacagatggggaaaaaaaacagtgacgcTGAGGTGATAGCGCGCTGTGTGGACATGAACGCGCTGCTCGATCGCTTCCACAATTACATCCTTCCTCATGTGCGAGGCCCGGAGCGGGTGTGTCACTGCACCTGtggcagACACCGGCTGCAGTACGTGATCCCGTACGAGGGTTCGAGCTCGCCAGACCGAGACCttccagcagggggcagcagtGTGACTAAGCAGGAAGTGGACCTGGTTCTGGGGCTGCTGCTGGGCTTCTGTATCAGCTGGGTTCTGCTCTGGCTGGACAGAACCCTGCACCGGGTTCTGCGGGCTTGGAGAACCCACCCACAGAAAGACGTGTGGAGGTCGTGGAAGTGGGTGACGAGAATGTGTAACGTACAGGAGCTTCGCAGGCGGCTGCAGCAGCGCAGGAACAACAGCGGAGGGGACAACAACGTGGTACAcgtcaaacacaaacactaccACAACGGGCACCTGAGCCCACGCAGACtctaatccacacacacacacacacacacacacacacacactgcagcaggcATCTGGGCCTAGAAGCACTCTTTGACAATGGTCTCAAAGCAgctcgctctctcactcactcacacacacacacacacacacacacacacacagtactaatTGATGCTTCCCCTGAACTCACACTGACCTGATTCTCCAAGGATGTGACTGTATTTAACGCACAGCAGGACTGAAGTCCCTGaactcttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355093 lncRNA upstream 37501 678949 ~ 726922 (+) False LOC117599902
TU355094 lncRNA upstream 37501 678949 ~ 726922 (+) False LOC117599902
TU355095 lncRNA upstream 37501 678949 ~ 726922 (+) True LOC117599902
TU355092 lncRNA upstream 81327 678949 ~ 683096 (+) False LOC117599902
TU355059 lncRNA upstream 162310 601558 ~ 602113 (+) True G299625
TU355137 lncRNA downstream 38204 808159 ~ 809350 (+) True G299679
TU355170 lncRNA downstream 68408 838363 ~ 838915 (+) True G299708
TU355157 lncRNA downstream 75513 845468 ~ 847722 (+) True G299695
TU355181 lncRNA downstream 103280 873235 ~ 873473 (+) True G299719
TU355109 lncRNA downstream 171881 941836 ~ 943526 (+) True G299659
XM_034314256.1 mRNA upstream 3206 753354 ~ 761217 (+) True ssu72
XM_026935674.2 mRNA upstream 11807 748649 ~ 752616 (+) True fndc10
XM_034314233.1 mRNA upstream 24071 725540 ~ 740352 (+) True LOC113539444
XM_034314263.1 mRNA upstream 61063 699026 ~ 703360 (+) True LOC113539512
XM_034314245.1 mRNA downstream 16400 786355 ~ 793053 (+) True sdhb
XM_034314266.1 mRNA downstream 23992 793947 ~ 805098 (+) True mfap2
XM_026935682.2 mRNA downstream 72898 842853 ~ 844870 (+) True LOC113539702
XM_034314473.1 mRNA downstream 93303 863258 ~ 872756 (+) True fbxo42
XM_026935675.2 mRNA downstream 105438 875393 ~ 883546 (+) True slc25a34
XR_004580271.1 other upstream 243536 518567 ~ 520887 (+) False cdkn1a
TU354975 other upstream 404165 356762 ~ 360258 (+) False dram2b
TU355161 other downstream 73025 842980 ~ 844811 (+) False LOC113539702
TU355179 other downstream 93383 863338 ~ 864888 (+) False fbxo42
TU355411 other downstream 726905 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other downstream 726905 1496860 ~ 1497627 (+) False LOC117599925
TU358141 other downstream 3697122 4467077 ~ 4469174 (+) False LOC113539599

Expression Profile