RNA id: XM_034314004.1


Basic Information

Item Value
RNA id XM_034314004.1
length 5150
RNA type mRNA
GC content 0.48
exon number 27
gene id kdm5ba
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9410252 ~ 9435881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCACTGCTTCCGCGTTGACGTGCGGTACGTGCAAATAGATGCGGTGTGAATGGAAAGAAGCAGTGATGGCCGTTTCATCGCTAGAAAGGcatttaagcaaagtacttctaGTTTAGAGCCGAACTGATGCGATACCTCGtttattacagtttctACATGTCATCGGTTGGATGTAGTTGCCCAGAATGACCCAACCTCGACCCAACGAGTTTATTCCACCGCCGGAATGTCCTGTGTTTGAGCCTAGCTGGGAAGAATTCGAGGACCCGTTTGCGTTTATCAACAAAATACGTCCCATTGCAGAAAAGACTGGTATTTGTAAGATCAGACCGCCGCAGGGGTGGCAACCACCATTTGCCTGTGATGTGGACCGATTGCATTTCACCCCACGTATACAGAGGCTCAATGAATTGGAGGCTCAAACCAGAGTCAAACTCAACTTTCTGGACCAGATAGCCAAGTTTTGGGAGCTGCAGGGCTGCACGTTGAAAATCCCTCATGTGGAGCGCAaatctcttgacctgtatcagcTCTACAAGTTGGTGATGGAGGAGGGCAGCTTTGACATGGTCTGCAGGGAACGGAAATGGACCCAGATAGCTCTGAAGATGGGCTTTGCTCCTGGCAAGGCTGTTGGATCTCACTTACGTGCCCACTATGAGAGGATTCTCTATCCTTACTACCTATTCCAGACAGGGGCCAACATTCTGAACTCACAGAAGCCCACTCTCACAAATGATACCAAAGATAAGATATATAAATCTCATGACTTGCCCCAGCGACAGTCTGTACAGCCTGCAGAAACCTCCACCATTGCTCGCAGAGCCAAACGGTCTAAAATCTCTTTAAAGgGTCGCTGTTTCAAAAGTGAGCAGGAGGAGCAGTGTGAGAACAGACCCAACCTGAGAAGGAGAATGGGCTCTTATGTGGCAAAACCAGAAGCAGTGAAAAATTTTCCAGTCCAGGTGAAACAGGAGCCTATGGAACAAGTTGAATCAATGCCTAATGGAGAAAAATCAAAGGTGGAGCAGTAcatgtgtttggtgtgtggGGGAGGCGGTGATGAGGACAAGCTGTTGCTGTGTGATGGGTGCGATGACAGCTACCACACATTCTGTCTTATCCCACCACTCCATGATGTTCCCAAAGGGGACTGGAGATGTCCCAAGTGCCTGGCACAGgagTGTGGCAAGCCTCAGGTTGCGTTCGGCTTTGAGCAGGCACCCAGAGACTACACACTCCGCTCCTTTGGAGATATGGCAGACTCCTTCAAGTCAGACTATTTCAACATGCCTGTGCATATGGTCCCTACTGAGCTGGTTGAGAAAGAATTTTGGCGTTTAGTTAGCACCATTGAGGAAGATGTCACAGTAGAGTATGGGGCAGACATTGCCTCAAAGGACTTTGGCAGTGGCTTCCCTGTCAGGAATGGTCCTTTTAAAGTCATGCCCAATGAAGAGCATTACCTCAGCTGTGGCTGGAACCTAAACAACATGCCAGTGCTGGATGCGTCTGTGCTGACTCACATCACGGCTGACATATGTGGGATGAAGCTGCCCTGGCTCTATGTGGGCATGTGCTTCTCCTCTTTCTGTTGGCATATTGAGGATCATTGGAGCTATTCTATAAACTATTTGCACTGggGAGAGCCAAAGACATGGTATGGTGCTCCTGGCTTTGCAGCAGAGCAGTTGGAAGCAGTGATGAAGAAACTTGCCCCTGAGCTCTTTGAGTCTCAGCCAGATTTGCTCCATCAGTTAGTCACAATCATGAACCCCAATGTGCTAATGGAGCATGGAGTCCCTATGCCACTTGGTCGACAGTGTGTAGAGCATTATCGCTCATTAAACAGATACTGTGTTTTCTCCCATGATGAGATGGTCTGTAATATTGCAGCCAAGGCAGACAGCCTGGAGCTGGAGTTGGCCTCTGCCATACAGAGGGACATGAGCATTATGATTCAGGAGGAGAAAGAGCTGCGAGAAAAAGCCTACAAGCTGGGTGTGTGGCACTCCCAGCAGGTGGACTATGATGAGCAGCCAGATGAGGAGAGGCAGTGTTCTAAATGCAGGACTACCTGCTACCTATCTGCCATCACCTGTCCCTGCAGCCCTGGCCAGCTGGTGTGTCTACACCACCTCCAGGACTTGTGCTCCTGTACCCCTAACCGTTATACGCTGAATTATAAGTACACCTTGGGCATGTTGAACCAAATGTTCAAGACTTTGGCAGCACATGCTGAGTCATACAGTGACTGGGCTTCTAAAGTTAACATAATTTTAAAGGCAGACCAAGACAATAAAAGTGACTTGGAGGAACTTCGTGCACTGATTGTGGAGGCAGAGAAGATGATGTATCCTGAGATGGACATGCTACACCGTTTAAGACAGGCTGTCCAGGATGCAGAAAAGAGTGCCTTAATGGCCCAGCAGCTACTCAATGGAAAGAGACAGACCAGGTATCGCTCAGGTGGTGGGAAATCTCAGAAACATCTCACTGTAGAGGAGTTGAGGTTATTTGTAAAGCAGCTATATAACCTGCCCTGCACCATTAGACAGGCCCCTTTTCTCAAGGCTCTGCTCAGCCGTGTCAGGCAGTTCCAGGAACAGAGCTCAGATCTCCTGGCCATAGAGATGCCCAGCTCCTCGGCCCTGCAAGCTGTGTTAGATGAGGGCTCGGGGCTGGAGGTAGAGTTGCCAGAGCTTGATGTGCTCAGGCAGCGGCTGGAGCAGGCACGCTGGGTTGAGGCAGTACAGCAGGCCAGCAAAGAGCCTACCAGCCTCAGCCTGGAACGCATGAGGAAACTGATTGACCAGGGAGTGGGTCTGGAGCCCCACGCCTGTGTGGAGAGGACCATGGCCCACCTGCAAGAGCTGCTCACTGTGTGTGAGCACTGCGAGGAGAAGGCACACAGCATGCTAATGGCCAGACCTCGCCAAAATTTAGAGACTCTGGAGGCAGTGCTGATGGAAGTAAATAGTATCCAGGCTTACTTGCCCAACTGTCTCCAATTGCAAGACTCAGTCATCAGGGCTAGAGAGTGGATACAGGAGGCAGAAGCTCTACAGCTTGGAGGACGTATCCCTGTTCTTTCCTCATTGAATGATCTGGTCTTAAAAGCTAAAGGCATCCCAGTCCTGCTGGAGCCTCTGGCACGGCTGGAAAGCCTAGTGTCAGAGGTGCAGGCCTGGAAGGAGAGCGcagcaaaaatgtttttgttgaggtactcctccctctccctcctgGAGGTACTGTGCCCCAGGTGTGACACAGGGTGTcagaaatcaaaatcaaaaagagtgagagatgtTCCTCCAGCTGCTACAAAAACTGGCATAAAACTGAACTGTTTTGGTGATGTGGAAAGAGCTCTCTCTGAAAGCAAAGACACAGCTTTAGCAATGGCTACTTTGTGTGAGGTGCGTTTGAAGGAGCTGGAGAACCTGAATATCCTAAGGACCACAAACAATGCAAAGTTTCTGCCCACAAACGGCTTGGCTCCTACAGTGTGCCTGTGCCATACAGTGCCAGCAGGCCCCATGCTCCAGTGTGAACTCTGCCATGATGCTTACCACAGTGGTTGTGTGCCAGGGTACCAGGGTACACAGGCAGGGCAGCCTTGGCTGTGCCCACTCTGCAGCCGATCTGAGAAGCCTCCTCTGGACAAGGTGTTGCCCCTGCTTGCCTCTCTCCAGCGTATTCGGGTACGGCTCCCAGAGGGTGACGCGCTGCGTTTTATGATTGAGAGGACAGTGCGTTGGCAGCAGAGGGTGCAACAGGTCCCACCTTTTACACAGCAGTTTATTGGAAAAATGAGACCTTTCTCTGGAAAGCCTTCTTCTCTATCCCTGGGTGGGAGTAACGGGTGCTTCTACATGCACCATTCGTGCATTCCTCTCAGTGttctTAGTCCTGAACTAGAGGAGCTGCTTGTAGAAGGACTCCTTCTACAGGTGACTTTGCCTGAGCTGCAGCATCTCTACCAGGGGTTGCTCAGCAGGTTTTTTCCCTCTCAGCATGCCCTACAGAGCAGCGAGCACGACCACCAGTACCACATTGCACAGGACATTAGCCTGGTTTACAAAAGCCCACCCCAAGGCAAGGTCCAGGATTTAGTTTTAGAGTTGCCAAAAGACACTGAGAAGCTAGAGAAGAACCCTAAGAGGCACTTAGAGAAGGAGACCTCTGATGTGCAGGACAGAGACACTGTTAAGAAACCCAAGAAAAAGAGGTCTAGGACAAACCAGGAGAGGacacatgagaaaaaaaacatctcctcCTCTGGTTTGAACTCAGACCCACCCTTTTCAGAGGACTCCGAGGAGGACTGGTCTGTGTGCTCGGCAAAGCGATGTCAACAGCCAGAGGGAAACGAGGTAAACTGGGTTCAGTGTGATGGCAACTGTAACCAGTGGTTCCACCAaatttgtgtgggtgtgtctgcTGAGCAGGCTGAGAATGAAGACTACATCTGCATCAACTGCTTAGTAAAATGATTTGACACCATAAGGACCAAAACTCTTTGGATAAACAAAAGGTAGATCACCATATATgtaccagattttttttctcctggccCTCAGAAGTCCCAGTCAGTCCTCCTTATCATGTTGGCACTATAGGACTGTACCAGAAACATCATGTTTTTCTGGTCTTTTTCCTCTTGTCTAGAGGACAGGACACAAAGATGTACCTCAGGTGTTTCTATCCCATAAATACAAGGTAGAGGGACATCAGTTTCCCCAAATGTAAAATTAGATTCTGCTTTTTTCACAATGTTACCTCTTAACATGCTAATTAATCTGACTACATGGCTCCAGGGCTGTTTTTCCACCAAATTAGATTAATTGGGCTAAACAGAAACctatgaatttatttttgaaaatgtatttggtACACATATCTAGTAtgcttgttatttatttatcccaGCAATAACTAAGCTGGTTCCCTGATTTTCTTCAGCTTCACCTCCTTTGATTGCTTTCTTCCATTAGCGATGGTTGTACAGAATCCTGATTTAGGTTGTCTAAGTGATGTAGCAGACAGAAGTGTGAAATATTCTTTGTGACctttgctgtttattttctttataaataaacaatatcaGATGTTCATTGTGGAATAAAATGGTTTGTTCTTGCTGGCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361387 lncRNA upstream 5985 9404051 ~ 9404267 (+) True G304926
TU361385 lncRNA upstream 14326 9395575 ~ 9395926 (+) True G304924
TU361378 lncRNA upstream 44419 9360330 ~ 9365833 (+) True G304917
XR_003403966.2 lncRNA upstream 97461 9311720 ~ 9312791 (+) True LOC113539732
TU361352 lncRNA upstream 112674 9297369 ~ 9297578 (+) True G304898
TU361416 lncRNA downstream 100419 9536300 ~ 9551524 (+) False shisa4
TU361417 lncRNA downstream 109348 9545229 ~ 9551761 (+) True shisa4
TU361423 lncRNA downstream 125504 9561385 ~ 9561606 (+) True G304947
TU361425 lncRNA downstream 139541 9575422 ~ 9576781 (+) True G304949
XR_004580259.1 lncRNA downstream 159247 9595128 ~ 9603865 (+) True LOC113539661
XM_026935714.2 mRNA upstream 364 9407525 ~ 9409888 (+) True rabif
XM_026935410.2 mRNA upstream 30267 9358819 ~ 9379985 (+) True LOC113539578
XM_034314301.1 mRNA upstream 30267 9358819 ~ 9379985 (+) False LOC113539578
XM_034314482.1 mRNA upstream 59359 9347088 ~ 9350893 (+) True rnpep
XM_026935588.2 mRNA upstream 74873 9323773 ~ 9335379 (+) True inavab
XM_026935241.2 mRNA downstream 1352 9437233 ~ 9488029 (+) True ipo9
XM_026935242.2 mRNA downstream 1352 9437233 ~ 9488029 (+) False ipo9
XM_026935243.2 mRNA downstream 1352 9437233 ~ 9488029 (+) False ipo9
XM_026935244.2 mRNA downstream 1352 9437233 ~ 9488029 (+) False ipo9
XM_026935611.2 mRNA downstream 100244 9536125 ~ 9551625 (+) False shisa4
XR_004580199.1 other upstream 851341 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 851464 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2630894 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4941078 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7911765 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1076790 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1328393 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1332826 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1332826 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 1675858 11111739 ~ 11112518 (+) True G305727

Expression Profile