RNA id: XM_026935723.2


Basic Information

Item Value
RNA id XM_026935723.2
length 2952
RNA type mRNA
GC content 0.41
exon number 4
gene id ninj1
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1608449 ~ 1620350 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAACAGTCCTAGCAACAGAGTAGCGTAATAAAGCGCGAGGGTTTAACCGGGTTTACTTCCGGTCAGTGGTGTGACCGCACGCGGGACGATAATACGAGGATCTCACGAGTTTCACCTTAAAGTACACACTTCTCTCCCGGGTTCGCTTCACATGTGCATTGTGTGTCACACACGGCCATTgctcCATGGCCGGGATACCGGAGGAGAATGTCGCCCCCTCTCAACATGAACCACTACGCTAATAAGAAGAGTGCGGCAGAGAGCATGCTGGACGTAGCGCTGCTGATGGCTAATGCGTCTCAGCTCAAGGCTGTGCTGGAGCAGGGCCCCACGTTCAGCTTCTACGCAccactcatcacactcatcagcATCTCACTCATCCTGCAGATCGTCGTCGGAGTTTTGCTCATATTCAtcgTGAAGTGGAATCTGAATGACGAAAGTAGACACTACCAGCTGAACGTTCTGGAAAACATCTCCACAGCCCTCGTCTTCATCATCGTTGTCGTAAACGTCTTCATCACGGCGTTCGGCGTGCAGAGACCCAACAACGGCGCATGATCAACACAGAGGTCGCACACATCAGGTCTGAGGCTGTAAGAAAAGTCGAGCGCGACTCGGGTTCTCCGAACTCCGGACGAGGTTTTCACCATCACCAGACCTGCTGCCATTCTTCACGACTGACTGTACGAGTGAGCGTACTAGCTCCGACTGCaagagacaaacacaaacaggatTCTGTAAAAATGTCTGCTGAAAATTCCTAGGTCAAATTTGGCCCTTCAAGTGATTGTGTTGACGTTTGTGTTGTAGATGTTTGAGCTTTATTTGTTACTTAAGACAAATGGGACAAATGCTGTTTGGGTTACAAATTCACAATTATCACCAAACTAACAGCAGGAAGAACCATTACTGCGTATCATATTACTGCTTCCATGAATGCATGcatcaatttaaataaatggctGAATGTTAGGCATGTGCTAATAATGGGTTGTACGATAGATCGTGATATTCACAGTATTGCAGTGATGACAAATACAAAATATCTCAGTGGAATAAAGGCAGAATAAAGACACTGGCgcttattcatcaaagttgtGTAAAAAAGGGAGCACAGACTCGAGCATGTGATTCACTGATCGGTCATACGATTAATGAATCCGCATTAATGAATCATTTGCATATGAAAAACCCCAGTTTTATAGAAAAGATTCCATGGCAGATAGAAAAGCAAATGTACTGGATCAACCATGAAACGCAACACACAGACggtaatttgcatatttgtgaCATGAGAACAACGAGCCACAGAGAAAAGCAAACCTTTCATTGCATTGCTGTTACATCACTGATCTCTGAGTGAGAAACAATCAGTAGTGGATTGCTCCTCATAGAATTTACCCCTGACTTCCCATCAGAAGAGAAAGTAATAACATTTCCCGtcatatatttctattttacatGAAACATGCCCTAATTTTATTATGTGTTGGTTCATCAGTCTAAGGAAGATGGGAAGAAAGAAGTGCATTTCAGTGAAGCTGAGGTAGAGCTGCTCGTGTTCGGAAGCAGCTGTTTTCTCACCTGAAGGTAGTGATGTCAGCTGTATTTATAGctcagtttttattcattttacaaaGTGGAATATCTCTGATTTACAGCACTAAACATTTAGGTCAGTCAAGTTTCCATCCTGAACAAATAAACGAATCCTTATTTCATTACAACTAAACGCTTTGATGAATAAGAGCCAGtatgttctgttttgggctcaTACGGTGGACAGGGTCGTGTGTGTCCTTCTCAGAGAAGCCagtcccataattctgttcaccagaTGAGACTTTTGTACGAGTTGGAAAGGCATGACAGACAGGATTACATGTTTAGAAATGTCACTGTAGCTGAATTCTAGCCAACAGGCGAGGTTTTGGCCAGAACTGAGggttttctgcctataacatattctgacacctcaactttaagaGCCCATAAATTCATGTgaatgacatggaaatgtttttattaactttataacCTTAccaggagccagtttaacacacacagcagtaaataTGGTCAGTCTGCTTAAAGACGTCttaaaccttgctagctaagtgtgatgtCTTCACACAGTGAGTGAATGTCCAGCGTTAATCAAGTTGTTGGAAAGTTACATGTTGTAGTGAAACAGACCCAAGCCTAATTAATTCACTTTGTAATCAGACATCATCGGATTGTGTCGAGGtgtcagaatgaaatctttaaatgctcTTTGCTCCCTTTCCACTTTGGaggtaaccagactttaaaatgctgcaACTTGTGATTAGTAGAAattttcaccatgtgaaggttttcccaggccgtCACACATATAaccacacacctgctgtattattcttattataatAAGAAATTATTCTGTTTAATTCCTGTCAGTTCTGAGACTTTCTGTCCTGCATTATTAATTCCAGCTCAGACGGgcattattcatgtttatttcagCTTATATAGCTAttttagatctttttttaatgcattaaaacTGTTTATCCAAACCAAAgtctataatgtgtgtgtgtgtgtgtgtgtgtgtgtcgaagaGACCCTGTGTAGGTGGTTTCTTCATGACTTTGCCTTTTAAGATTAAAACTGAACTGAGTCGAAGATTCCAAAACCCTTCCagtattaaagaaataattggaatgaaaatctaatttataaaattgttaTGAATCTAATCGACGGGGCAAGATGTGTCTGGTGTCTGATATTTTTCCTTCTTGCTTgttttgtacatgttttttttactgaagttaCCATGAAGCTTACAGCCTCCAGTTCAGCGTGATGTGTAAGCGTGTGATGAATCTGATATGCAGAAACTAAGTAAGCAAACGTCAGACACCAGACACGTCTCGGCTAATAAACATTTGAGTATGCA

Function

GO:

id name namespace
GO:0042246 tissue regeneration biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580234.1 lncRNA upstream 4120 1600693 ~ 1604586 (+) True LOC117599906
TU355388 lncRNA upstream 114061 1486450 ~ 1494645 (+) False erc2
TU355383 lncRNA upstream 171449 1408502 ~ 1437257 (+) True G299851
TU355362 lncRNA upstream 251868 1356322 ~ 1356838 (+) True G299833
TU355303 lncRNA upstream 307302 1278848 ~ 1301404 (+) True G299786
TU355401 lncRNA downstream 450 1620800 ~ 1622584 (+) True G299862
TU355461 lncRNA downstream 5743 1626093 ~ 1640428 (+) True G299916
TU356239 lncRNA downstream 200271 1820621 ~ 1822339 (+) True G300447
TU356266 lncRNA downstream 234351 1854701 ~ 1857401 (+) True G300467
TU356290 lncRNA downstream 300177 1920527 ~ 1924467 (+) True G300479
XM_034314475.1 mRNA upstream 109534 1497715 ~ 1499172 (+) True LOC117599925
XM_026935436.2 mRNA upstream 116411 1448442 ~ 1492295 (+) True erc2
XM_026935442.2 mRNA upstream 116411 1448442 ~ 1492295 (+) False erc2
XM_026935386.2 mRNA upstream 164081 1376479 ~ 1444625 (+) True bsnb
XM_034314184.1 mRNA downstream 39858 1660208 ~ 1752294 (+) False cacna1da
XM_026935291.2 mRNA downstream 39858 1660208 ~ 1752294 (+) True cacna1da
XM_026935295.2 mRNA downstream 39858 1660208 ~ 1752294 (+) False cacna1da
XM_034314183.1 mRNA downstream 39858 1660208 ~ 1752294 (+) False cacna1da
XM_026935290.2 mRNA downstream 39858 1660208 ~ 1752294 (+) False cacna1da
TU355411 other upstream 110219 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 111079 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 743818 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 763895 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 1087819 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 2846727 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 5043724 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 6881288 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 6881288 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 8892321 10512671 ~ 10513270 (+) True G305515

Expression Profile