RNA id: XM_026935730.2


Basic Information

Item Value
RNA id XM_026935730.2
length 1812
RNA type mRNA
GC content 0.49
exon number 8
gene id hmces
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2894838 ~ 2903607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAACCGCTTCACTGTGGCATTGTGGCAGATTGTGCACAGGAGACTGAGAATGAGAAAGGAAGAATAACTGCATATTAATGATGTGCATTAGGAAATCCAGCCTTAACCACAATGCAGATATATTTGCATGAGCAGAAGTAAGCTACCTAGCTAACGTTACGCTGATAAACCGTTGTTGTTTTCTGTGACACGCACAGACTGGGATCATGTGTGGAAGGACAGCCTGCACCCTCGCCCCTGATGAGCTCCGGCGCGCTTCTCGGTACCGAGACCGGTCTGGAAAGCGGCGCCGGCCTCAGTGGAGGGACGGCGATGCGGAAAAATACCGGCCCTCCTACAACAAGAGTCCTCAGTCCTTCAGTCCGGTTCTGCTGTCCGGCAGACACTTTAATAAGGAAGCCGCAGTGGATGAGTGCGTGCTGGCGACGATGCGGTGGGGTCTGGTGCCGGCGTGGTTCAAGCAGAGAGACCCGAACAAGATGCAGTTCAGCACCTCCAACTGTCGCAGCGAGAGCTTGCTGGAGAAAAAGTCTTACAAGGAACCTCTGTTGAAAGGGCAGCGTTGTGTCATTCTAGCCGACGGCTTCTACGAGTGGAAGAGGCTGCAGAAGGAAAAGCAGCCTTTCTTCATCTATTTCCCCCAGAGCCAGGGAGATAAGCAGGATGGGGACGAGGTAAAGATGGAAAATGATGAACAGTGTGAAGGAGAGGCAGGGGACACTAAAAAGCGCAGCAAGTGGACAGGATGGCGTCTGCTCACCATGGCGGGGCTGTTTGACTGCTGGACTCCCCCTGATGGTGGGGAGGTTCTTTACACCTACACCATCATCACTGTGAACGCCTCACCAGACCTGCAGAGCATCCATGACAGgatGCCGGCCATTCTGGATGGAGACGAGGAGGTGAGACGATGGTTGGATTTCGGGGATGTGCGCTCGCTGGAAGCTCTTAAGTTGCTTCAGTCTAAATCCTGCCTGACCTTTCACCCCGTCTCTTCAATCGTCAACAACGCGCGCAACAACTCCCCCGAGTGCCTGCAGCCGCTGGGCCGTGCCGCCAAGAAGGTTCCTGTTAAGGCATCGGCCAGCAGCAAGATGATGGTGAGCTGGCTGAAAAATGGCTCTCCCAGTAAGAGGAAAGAGCTTGATGATGCCGAAACGGATGAAAAGCCTCCGTCTGGGAAGCAGCAGTCCAAAGCCGTGGGGCCGCCACTGCAGCAGTGGCTGCTGGGAAGCGGGGCCAGTAAGAGACCAAGAACATAAAGCTCCCGAACACTGATAGTTAAATATGTTGGCAGCACTGAATGCTACTGTAATTCGTTTGCATCAGAATGTACAatggctgaatgaatgaatgctctGTTAGatgttctgcttttttttttttgcttcctgaGACGCTGAGTATTTTTAAAGCCACGCATTCACAATAACACAGATCCTGCAGTGCATCTTCTGTGCCTATTGTCTTATGTGATTTTTACTCGAATTTCACGACAGTTTGTTTGCAGTTTTACAAAAGTGGAGAGAGACCGTGCAGTTAAAATCTACCGCACGTGTGTTTTATGATTCCATTATTTTACTAGGAAAGGACAGATGATTAGCCCCTATACTTGGGTGGATTGGTTAAAGGGAGACAGTGTTAAAACCGAAATTTATTAtctataataaaatagaaagcCTCAGAACAGAGAGAAGGTTTCATTTTAATACTtgagctccagtgcaaaactagcGGAGGAACATCATCATACGAGCGAGAGGCAAATGAAAAACGTATTTTTATGTTGTGTTATTGCTATTGCGTTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU356715 lncRNA upstream 157930 2736478 ~ 2736908 (+) True G300843
TU356713 lncRNA upstream 157977 2736478 ~ 2736861 (+) False G300843
TU356712 lncRNA upstream 158831 2735036 ~ 2736007 (+) True G300842
TU356710 lncRNA upstream 165231 2728484 ~ 2729607 (+) True G300841
TU356709 lncRNA upstream 167327 2727304 ~ 2727511 (+) True G300840
TU356639 lncRNA downstream 3101 2906708 ~ 2908054 (+) True G300775
XR_003403928.2 lncRNA downstream 125333 3028940 ~ 3060846 (+) True LOC113539486
TU357449 lncRNA downstream 549064 3452671 ~ 3453505 (+) True G301487
TU357469 lncRNA downstream 618185 3521792 ~ 3530359 (+) True G301506
TU357636 lncRNA downstream 1007033 3910640 ~ 3912283 (+) False LOC113539463
XM_026935163.2 mRNA upstream 1579 2886724 ~ 2893259 (+) True tada3l
XM_026935381.2 mRNA upstream 13198 2859653 ~ 2881640 (+) False pfkfb4a
XM_026935380.2 mRNA upstream 13198 2865983 ~ 2881640 (+) True pfkfb4a
XM_034314414.1 mRNA upstream 16287 2859597 ~ 2878551 (+) False pfkfb4a
XM_026935408.2 mRNA downstream 21526 2925133 ~ 2941266 (+) True tmf1
XM_026935409.2 mRNA downstream 21526 2925133 ~ 2941266 (+) False tmf1
XM_034314416.1 mRNA downstream 38250 2941857 ~ 2958705 (+) True eogt
XM_034314415.1 mRNA downstream 38250 2941857 ~ 2958705 (+) False eogt
XM_026935664.2 mRNA downstream 61757 2965364 ~ 3013692 (+) True tafa4b
TU355411 other upstream 1396351 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 1397211 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 2029950 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 2050027 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 2373951 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 1563470 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 3760467 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 5598031 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 5598031 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 7609064 10512671 ~ 10513270 (+) True G305515

Expression Profile