RNA id: XR_003403967.2


Basic Information

Item Value
RNA id XR_003403967.2
length 2886
RNA type misc_RNA
GC content 0.46
exon number 22
gene id cpne5b
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6663968 ~ 6779358 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTTTACCCGGttccccccccctttttttcgAGTTCCCGTTAAATCCCGTGGGAACCGAAAAGGTGTTCCGTGTGATCCGTGCTTCTTGGCGTGTGCCGGGCCACGCGTTTTACTCATGGAGGGAGACGTTATGGACAAGCTGGACGACATGGCCTCGGTGTACGAGTTCGACCCGTTTACAGGCAACATTCCCGCGACCAAAGTGGAGATCACCGTCTCGTGCAGGAATCTTCTAGACAAAGACACATTCTCCAAATCAGACCCAATGTGTGTCCTGTATACACAAGGAGTCGAGACGAAGCAGTGGAGAGAGTTTGGCAGAACTGAGGTGATTGACAACACACTAAATCCGGACTTTGTCAGAAAGTTCATCCTTGACTACTTCTTCGAAGAGAAACAGAACCTTCGATTTGACTTataTGATGTTGACTCTAAAAGTCCAGACCTCTCAAAGCATCCCTCAGAGTTCAACGATTTTCTTGGACAGATGTTCTGCACCCTGGGCGAGATTGTCGGCTCACCAGCAAGTCGATTGGAGAAAACTCTTGGGGGGATCCCTGGGAAGAAGTGTGGAACCATCATCCTGTCGGCAGAAGAGCTTGGAAACTGCAGGgatAGTGCAACCATGCAGTTTTGTGCCAATAAGCTGGACAAGAAGGACTTCTTTGGGAAGTCGGATCCCTTTATGGTGTTCTACAGAAGTAATGAAGATGGAACGTTCACCATCTGCCATAAGACGGAGGTGGTGAAGAACACCCTCAATCCAGTTTGGCAGTCTTTTACCATCCCAGTGAGAGCACTCTGCAATGGGGATTATGACCGAACGATTAAGGTCGAGGTGTATGACTGGGATCGAGATGGAAGTCACGATTTTATTGGCGAATTCACCACCAGTTACCGAGAGCTAGCCCGAGGTCAGAGCCAGTTCAACGTGTATGAGGTGGTGAATCcaaagaagaagatgaaaaagaagaaatacatCAATTCTGGCACAGTGACACTGCTGTCTTTTTCTGTGGAGTCTGAATTTACTTTCCTCGATTACATCAAAGGAGGGACCCAAATCAATTTCACAGTGGCCATCGATTTCACTGCTTCTAATGGTAACCCGTCCCAGTCCACGTCCCTCCACTATATGAACCCTTACCAGATGAATGCCTATGCCATGGCACTAAAGGCCGTAGGAGAGATCATCCAGGACTACGACAGTGATAAGATGTTTCCTGCACTGGGCTTTGGGGCAAAATTACCCCCGGATGGACGTGTGTCCCATGAGTTCCCTCTGAATGGTAATATTGAAAACCCCTATTGTAATGGGATTGAGGGGATCTTGGAGGCCTACCACCAGAGCTTAAAGACTGTCCAGCTTTATGGGCCCACAAACTTCGCCCCTGTGGTTAACCATGTAGCCAGGTATGCGGCGGCTGTCCAGGACGGATCACAGTACTTTGTCCTCCTCATTATCACAGATGGAGTCATATCAGATATGGCCCAGACCAAAGAGGCCATTGTGAACGGTGCCAAGCTTCCCATGTCAATCATCATTGTTGGAGTGGGCCAAGCAGAGTTCGATGccaTGGTGGAGTTGGATGGTGATGACATAAGGATTTCCTCACGAGGGAAACTAGCAGAACGGGACATTGTTCAGTTTGTGCCATTCCGGGACTACATGGACCGGACGGGTAATCATGTGCTAAGTATGGCGCGGCTGGCCAAAGATGTCCTGGCAGAAATCCCCGACCAATTTATTTCATACATGAAGAGCCGAGGCATCAAACCGAACCCAGCGCCCCCTCCTTACACACcctcaggacacacacaccacacacagataTGAGGCCACCCTTCCCTGAGGGTGTGCTCAGCCTGACATCAGCCTCCTTGGAATTATGGGATTGGGACTGATGGAGCAGCAGGCCACAGGCTCTGTGCATAACTCTATATATGGTCTCTCTGGGACACTCTGAGATGCCAAGGCATTTCTGTTACCGCTTTTGTTTCCTGCCTGTTTTCTCTGGGACAACAGCATGATCAAAGAAGCACACTTCAGTCAAGTTTttgtcaaaaaaagaaaaagaaattaaaaaaaaatctcggCTCATGACTGTTTCTCTTTTGGGGCAGTGAGttgagaaggaaggaagaggacAATATTTGTGGATTCAACTCGTGCCTGTCTGTCGTTGTCTCAGTGTACCTGGACAAGTATTCCCTGCTCTGACCGTTGACCTTACTCCACATTGGTGTACTATGTGCATtcagGTCTGGTGAGTCACAGGCAACATAGACGTGGCATTTCTGGTGACCTGTTCAACTGGGCATGCGGTAATGCTGCAGCGATGAGTCACCATAACATCTAAGTGAATAACTGATTGTAACTAATTAAAGCACACAAAATTAGACAAAGTATTATTTTATCTCCATTGCATGTCTagtcagaatgaatgaattcaaacATTGTTTCTGGTTTATGAAATGATATCTAAGTCAATATAGGGTATAAACAAATAGATCAGCTTTATGTAATTGTTTCTGTTATTTGTCAATTCCCAGCTGGATAGTTTTCATataaattactgaaaaaatgtTATAGCATCAtgtatataaattacatttgatttctttctctttatgttCCGTTAGGGCAtgcatgatctttttttttttctttctcctacACCATAATATTCCATATAAAGGTAGATTATGAATTCCAGGTTATGATAGAATGACTACACAATATGCTCACTGTCCACCTTACTAGGAACGCCTATgccctactcattcatgcaattatctgcCATtcctgtggcagcagcacaatgcataaaatcatgcagatacaggtcaagagcttcagttaatgtttacatcaaacatcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU359641 lncRNA upstream 4736 6635857 ~ 6659338 (+) True G303404
TU359549 lncRNA upstream 161438 6498084 ~ 6502636 (+) True tmem167b
TU359550 lncRNA upstream 161750 6498084 ~ 6502324 (+) False tmem167b
TU359315 lncRNA upstream 312978 6350192 ~ 6351096 (+) True G303181
TU359310 lncRNA upstream 370325 6200446 ~ 6293749 (+) True LOC113539422
TU359680 lncRNA downstream 11960 6791318 ~ 6793226 (+) True G303437
TU359917 lncRNA downstream 88360 6867718 ~ 6870772 (+) True G303645
TU359932 lncRNA downstream 119132 6898490 ~ 6900530 (+) True G303658
TU360012 lncRNA downstream 215487 6994845 ~ 7001112 (+) True LOC113539683
XR_003403952.2 lncRNA downstream 216715 6996073 ~ 7001081 (+) False LOC113539683
XM_026935314.2 mRNA upstream 13045 6589042 ~ 6651029 (+) True kif21b
XM_026935595.2 mRNA upstream 93101 6536593 ~ 6570973 (+) True srpk1b
XM_026935596.2 mRNA upstream 93101 6537712 ~ 6570973 (+) False srpk1b
XM_026935594.2 mRNA upstream 93101 6547287 ~ 6570973 (+) False srpk1b
XM_034314367.1 mRNA upstream 93101 6551315 ~ 6570973 (+) False srpk1b
XM_026935532.2 mRNA downstream 103030 6882388 ~ 6885522 (+) True LOC113539624
XM_034314086.1 mRNA downstream 123981 6903339 ~ 6917985 (+) False zgc:113307
XM_026935647.2 mRNA downstream 133892 6913250 ~ 6917985 (+) True zgc:113307
XM_034314084.1 mRNA downstream 145908 6925266 ~ 6933151 (+) False prelp
XM_026935646.2 mRNA downstream 148686 6928044 ~ 6933151 (+) True prelp
TU358141 other upstream 2194900 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 5165587 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 5166447 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 5799186 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 5819263 842980 ~ 844811 (+) False LOC113539702
XR_004580199.1 other downstream 1722280 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 1722280 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 3733313 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 3984916 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 3989349 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile