RNA id: XM_026935778.2


Basic Information

Item Value
RNA id XM_026935778.2
length 1899
RNA type mRNA
GC content 0.43
exon number 12
gene id chia.2
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8656659 ~ 8659829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCAAGACTATTTAAGCTCTGCGAACTATAGGTTCATTTGTCTTTCATCCAGAAAGTACCCCAGAATTACAAGCGAAAAAAACACAAGAGGTGCTATCAGAATGGCCAGGCTCACACTTCTTGCAgGCTTGTGCTTGGTGCTGTGTCACTTTGCAACATCCAGGCAACTGGTATGCTATTTCACCAACTGGTCTCAGTACCGACCTGGAGCTGGGAAGTTCACGCCTGCTAGTGTAGATCCGTTCCTGTGTACACATCTGATTTATGCCTTTTCTATTATTAACCATGCCAATGAGCTTGTCACATATGAATGGAACGATGAAACCCTCTACCAATCCTTCAATGCCTTAAAGAAAACTAATCCCCACCTTACAACTCTTTTGGCTGTTGGTGGATGGAATTTTGGCTCGACTCAGTTTTCCATCATGGTCTCCTCATCTGCCAACCGTCAAAAGTTCATCCAGTCATCCATCTCCTTCCTAAGGACACATGGATTTGACGGTCTGGACTTGGATTGGGAATACCCAGGTTCCAGAGGTAGCCCTCCTGAGGACAAACAGAGATTTACTTTATTGTGCAAGGAACTGGTGGAAGCTTTTGAGGCAGAAGGTAGAGCTACTGGACGGCCTAGACTCCTGCTTACTGCTGCAGTAGCTGCTGGCAAAGGGACCATTGATGCTGGATATGAAATAGCAAAGATTGCAAACTATCTTGACTTTATCAATGTGATGACCTATGACTTCCATGGAACTTGGGAGAGCTTCACAGGACACAACAGCCCCCTGTATAGGGGATCTCAAGACTTCGGAGATCTTGTTTACTTCAACACTGATTATGCAATGAAATACTGGAGGGACAACGGTACCCCTGTGGAGAAATTGAGAATGGGATTTGCCACATATGGTCGTACCTTCCGCCTCAGTTCTTCAGCTACTGGAGTGGGAGCTTCAGCCAGTGGACCAGCCTCTGCTGGACCTTACACCCGGGAGGCCGGCTTCTGGTCCTACTATGAGATCTGTGGATTCCTTCAGGGAACAAAACTTGAGTGGATTGAGGATCAGAGAGTACCGTATACTTCCAAGAGTGGTGAATGGGTTGGCTTTGACACCAAAGAGAGCTATGAGATCAAGGTAAGGTATCTGCAAGACAACAAGTTTGGGGGGGCTTTTGTTTGGGCCCTGGATCTGGATGACTTTTCTGGCGAGTTCTGTGGGCAGGGGAAGCATCCTCTTATGGGTCACCTACGCAAGCTCCTAGATATTGATATGCCTACACTGCCTCCTCCCACTACTCCCAAACCTGGTGCATCAACCACCCCAAAACCCACCACAAGAACTACAACAACCACAACTACCACACATGCGCCTGGAAGTGGATTCTGTGCTGGAAAGCCTGATGGCATTTATGCTAACCCTGAAGACCCAAACAAATTCTATGACTGTGCTGGAGGTACAACATATGTAAAGAGGTGTGGAGATGGAACAGTGTTTGATGACACATGCAAATGCTGTGGCTGGGCTAAGCCTTAAACTCAATAGCAATAGTAAAAGCCAAATTAATGCTGTACAAGAGCAATGCCACGTCACAATATTAGGAATTAATATAAGGCAAAATTCCTGAAACAGTATTGGTAGAACAAATTGTGACTAGTATTAATTTATCTTATaggaatataaatatattcagaaCAGTGTCATTTATGGACCCTTATATTTCttataattatgtatatttgCCCAATGTATcttgttaaacattttaaatcctgCTGTAAATGTTCATTAACAAACATCAATATTGAAATCTTAAATATGCTTTTAGTTTTGAAAATTATAATATGTCTGTACCATATTAATTTGTCTATTTTTGgagcaataaaacaaatgtattGAAGCAAA

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG:

id description
K01183 E3.2.1.14; chitinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU360834 lncRNA upstream 176070 8480377 ~ 8480589 (+) True G304453
TU360831 lncRNA upstream 184345 8472084 ~ 8472314 (+) True G304450
TU360730 lncRNA upstream 254526 8394722 ~ 8402133 (+) True G304367
TU360731 lncRNA upstream 254526 8399071 ~ 8402133 (+) False G304367
TU360658 lncRNA upstream 438524 8217868 ~ 8218135 (+) True G304299
XR_004580236.1 lncRNA downstream 9809 8669638 ~ 8671697 (+) True LOC117599908
TU360968 lncRNA downstream 29664 8689493 ~ 8689709 (+) True G304566
TU360977 lncRNA downstream 58395 8718224 ~ 8718463 (+) True G304575
TU361008 lncRNA downstream 96769 8756598 ~ 8761643 (+) True G304599
TU361011 lncRNA downstream 96769 8756598 ~ 8758550 (+) False G304599
XM_026935229.2 mRNA upstream 19849 8632261 ~ 8636810 (+) True chia.1
XM_026935688.2 mRNA upstream 26457 8587864 ~ 8630202 (+) True cntn2
XM_034314098.1 mRNA upstream 94957 8501640 ~ 8561702 (+) False nfasca
XM_026935339.2 mRNA downstream 13350 8673179 ~ 8683472 (+) True zc3h11a
XM_026935337.2 mRNA downstream 13356 8673185 ~ 8683472 (+) False zc3h11a
XM_034314277.1 mRNA downstream 13357 8673186 ~ 8683472 (+) False zc3h11a
XM_034314278.1 mRNA downstream 13357 8673186 ~ 8683472 (+) False zc3h11a
XM_026935338.2 mRNA downstream 13364 8673193 ~ 8683472 (+) False zc3h11a
XR_004580199.1 other upstream 97748 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 97871 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 1877301 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4187485 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7158172 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1852842 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 2104445 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 2108878 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 2108878 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 2451910 11111739 ~ 11112518 (+) True G305727

Expression Profile